View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4574-Insertion-1 (Length: 880)

Name: NF4574-Insertion-1
Description: NF4574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4574-Insertion-1
NF4574-Insertion-1
[»] chr1 (27 HSPs)
chr1 (534-880)||(17316058-17316404)
chr1 (8-321)||(17318203-17318515)
chr1 (645-806)||(30805592-30805753)
chr1 (555-836)||(33439048-33439329)
chr1 (438-534)||(17316447-17316543)
chr1 (352-432)||(17318092-17318172)
chr1 (644-836)||(12397971-12398166)
chr1 (745-832)||(17103087-17103174)
chr1 (699-834)||(15440920-15441054)
chr1 (748-814)||(31584086-31584152)
chr1 (747-836)||(14580381-14580470)
chr1 (643-836)||(26898245-26898440)
chr1 (689-782)||(15650834-15650929)
chr1 (746-836)||(1812492-1812582)
chr1 (738-836)||(41029619-41029717)
chr1 (745-836)||(34188111-34188202)
chr1 (681-779)||(37283053-37283152)
chr1 (657-743)||(22049549-22049635)
chr1 (836-876)||(15787402-15787442)
chr1 (757-835)||(2973457-2973535)
chr1 (390-420)||(13090513-13090543)
chr1 (836-878)||(15650726-15650768)
chr1 (790-835)||(10751508-10751553)
chr1 (555-616)||(22666383-22666444)
chr1 (534-626)||(30805755-30805848)
chr1 (480-533)||(30805892-30805945)
chr1 (747-836)||(43282164-43282252)
[»] chr7 (25 HSPs)
chr7 (568-836)||(19143704-19143973)
chr7 (568-836)||(20743103-20743372)
chr7 (534-806)||(32957691-32957964)
chr7 (534-836)||(27707010-27707329)
chr7 (534-634)||(8105747-8105847)
chr7 (700-836)||(10646515-10646652)
chr7 (622-836)||(17891089-17891303)
chr7 (689-836)||(8105909-8106057)
chr7 (534-831)||(1783101-1783399)
chr7 (751-836)||(5265583-5265668)
chr7 (628-724)||(26822520-26822616)
chr7 (683-829)||(24865653-24865799)
chr7 (683-800)||(23022373-23022490)
chr7 (679-794)||(15053381-15053496)
chr7 (543-630)||(5265358-5265445)
chr7 (699-828)||(956830-956959)
chr7 (699-832)||(8259627-8259762)
chr7 (703-766)||(22975580-22975645)
chr7 (764-836)||(11608854-11608926)
chr7 (555-610)||(7185573-7185628)
chr7 (835-878)||(8106071-8106114)
chr7 (390-427)||(10375469-10375507)
chr7 (480-534)||(10646827-10646881)
chr7 (791-836)||(1877998-1878043)
chr7 (835-876)||(12341718-12341759)
[»] chr8 (13 HSPs)
chr8 (534-836)||(28890388-28890695)
chr8 (534-836)||(23584618-23584921)
chr8 (658-830)||(24308592-24308765)
chr8 (678-836)||(25724353-25724512)
chr8 (745-836)||(18527816-18527907)
chr8 (752-836)||(7321068-7321152)
chr8 (703-808)||(25727261-25727367)
chr8 (703-836)||(24122057-24122189)
chr8 (748-836)||(24276893-24276981)
chr8 (699-811)||(28800503-28800614)
chr8 (751-836)||(12863724-12863809)
chr8 (835-878)||(24308529-24308572)
chr8 (791-836)||(1208417-1208462)
[»] chr3 (30 HSPs)
chr3 (534-878)||(14426883-14427230)
chr3 (641-832)||(38076064-38076256)
chr3 (667-836)||(17119259-17119430)
chr3 (555-836)||(4514795-4515078)
chr3 (643-774)||(5554685-5554817)
chr3 (699-836)||(9796435-9796573)
chr3 (641-836)||(4767391-4767587)
chr3 (689-836)||(17637203-17637351)
chr3 (681-809)||(14332529-14332659)
chr3 (534-836)||(13291394-13291696)
chr3 (747-836)||(17034175-17034264)
chr3 (699-768)||(16198769-16198839)
chr3 (641-802)||(19306694-19306858)
chr3 (748-831)||(4244316-4244399)
chr3 (681-809)||(14252235-14252365)
chr3 (534-614)||(17119115-17119195)
chr3 (835-878)||(4767334-4767377)
chr3 (534-632)||(10929054-10929149)
chr3 (769-836)||(20311397-20311464)
chr3 (534-619)||(4767658-4767743)
chr3 (701-814)||(5638397-5638509)
chr3 (480-533)||(10928957-10929010)
chr3 (698-743)||(15331081-15331126)
chr3 (836-876)||(38076005-38076045)
chr3 (835-878)||(5554628-5554671)
chr3 (753-836)||(11044944-11045026)
chr3 (835-878)||(17119444-17119487)
chr3 (533-651)||(19905825-19905943)
chr3 (836-875)||(46349443-46349482)
chr3 (786-831)||(4253249-4253294)
[»] chr4 (20 HSPs)
chr4 (534-831)||(11545306-11545605)
chr4 (534-836)||(17473792-17474112)
chr4 (626-808)||(21821845-21822028)
chr4 (546-836)||(11419819-11420128)
chr4 (534-836)||(21809671-21809989)
chr4 (641-831)||(11449149-11449340)
chr4 (626-836)||(47575828-47576040)
chr4 (622-836)||(19053402-19053617)
chr4 (534-630)||(14475357-14475452)
chr4 (693-836)||(20896824-20896966)
chr4 (538-632)||(14475570-14475664)
chr4 (753-832)||(12380494-12380573)
chr4 (835-878)||(20896767-20896810)
chr4 (703-836)||(15736938-15737070)
chr4 (841-878)||(21809614-21809651)
chr4 (772-836)||(8677266-8677330)
chr4 (699-766)||(22222448-22222516)
chr4 (836-875)||(22222325-22222364)
chr4 (835-878)||(47576054-47576097)
chr4 (835-876)||(11420142-11420183)
[»] chr2 (32 HSPs)
chr2 (604-836)||(16586630-16586862)
chr2 (534-771)||(16586866-16587103)
chr2 (680-814)||(28449216-28449351)
chr2 (574-836)||(27765351-27765617)
chr2 (681-836)||(18848605-18848761)
chr2 (699-836)||(23959637-23959774)
chr2 (533-832)||(19877770-19878067)
chr2 (611-743)||(16492257-16492389)
chr2 (699-814)||(22268949-22269064)
chr2 (759-836)||(17569251-17569328)
chr2 (537-632)||(16917316-16917412)
chr2 (657-781)||(21748221-21748348)
chr2 (681-782)||(22311308-22311411)
chr2 (708-782)||(21547996-21548072)
chr2 (553-618)||(29409734-29409799)
chr2 (681-836)||(35665846-35666002)
chr2 (751-811)||(15375921-15375981)
chr2 (681-780)||(19564944-19565044)
chr2 (544-616)||(20588742-20588814)
chr2 (681-782)||(24764228-24764331)
chr2 (835-875)||(27765297-27765337)
chr2 (480-534)||(16587146-16587200)
chr2 (783-836)||(13074082-13074135)
chr2 (835-872)||(16586579-16586616)
chr2 (836-876)||(17417077-17417117)
chr2 (699-782)||(18922628-18922712)
chr2 (699-793)||(13073916-13074010)
chr2 (836-875)||(22311200-22311239)
chr2 (681-782)||(17417185-17417287)
chr2 (708-801)||(20588519-20588613)
chr2 (836-878)||(21547885-21547927)
chr2 (836-878)||(21585066-21585108)
[»] chr6 (14 HSPs)
chr6 (541-832)||(4312480-4312789)
chr6 (677-836)||(22562419-22562580)
chr6 (657-836)||(10814451-10814633)
chr6 (747-836)||(6560557-6560646)
chr6 (534-653)||(10814673-10814792)
chr6 (699-836)||(17291786-17291924)
chr6 (706-836)||(29032275-29032405)
chr6 (689-836)||(17146236-17146383)
chr6 (757-836)||(21747375-21747454)
chr6 (543-616)||(22562670-22562743)
chr6 (764-835)||(11703801-11703872)
chr6 (745-836)||(26238925-26239016)
chr6 (836-874)||(14272294-14272332)
chr6 (836-878)||(10821517-10821559)
[»] chr5 (14 HSPs)
chr5 (599-836)||(24838028-24838265)
chr5 (665-809)||(26014000-26014145)
chr5 (534-630)||(26013819-26013915)
chr5 (534-832)||(26335270-26335569)
chr5 (543-624)||(22826244-22826325)
chr5 (667-782)||(30607981-30608098)
chr5 (762-836)||(27500101-27500175)
chr5 (738-836)||(17337753-17337852)
chr5 (699-805)||(20690348-20690452)
chr5 (555-616)||(30608178-30608239)
chr5 (836-878)||(24492065-24492107)
chr5 (533-589)||(27499899-27499955)
chr5 (645-724)||(27499994-27500073)
chr5 (394-428)||(27736626-27736660)
[»] scaffold0650 (1 HSPs)
scaffold0650 (622-771)||(6123-6272)
[»] scaffold0003 (1 HSPs)
scaffold0003 (699-836)||(319104-319240)
[»] scaffold0804 (1 HSPs)
scaffold0804 (747-836)||(98-187)
[»] scaffold0754 (1 HSPs)
scaffold0754 (837-875)||(4950-4988)
[»] scaffold0053 (1 HSPs)
scaffold0053 (836-878)||(28340-28382)
[»] scaffold0024 (1 HSPs)
scaffold0024 (699-782)||(105353-105438)
[»] scaffold0758 (1 HSPs)
scaffold0758 (791-836)||(4626-4671)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 534 - 880
Target Start/End: Complemental strand, 17316404 - 17316058
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 633  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17316404 gacaaattgtactatcagactttgatagagacaactacataagaagacaaatctgacgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 17316305  T
Q  634 gtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatatttttta 733  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17316304 atgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatatttttta 17316205  T
Q  734 ccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagc 833  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  17316204 ccacaatcttgaacttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctacggtcctgcaaaattaaacagatattagc 17316105  T
Q  834 ataatactttgttatcatcaaaatcttaaaggaattgtacaaaccga 880  Q
    |||||||||||||||| |||||| |||||| ||||||||||||||||    
T  17316104 ataatactttgttatcgtcaaaaccttaaaagaattgtacaaaccga 17316058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 17318515 - 17318203
Alignment:
Q  8 aataaaatattcgtttatttttcttagtattgctttttcatggatgttagggattagcatctaggaaagctcttgcttttctctatggaactccttgttt 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17318515 aataaaatattcgtttatttttcttagtattgctttttcctggatgttagggattagcaactaggaaagctcttgcttttctctatggaactccttgttt 17318416  T
Q  108 taagctcgtctattgactcaattttcccataaacattagaaatgctatgagtttgctcgtctttgctcgcctagtaaaatgtcttgtactcacgatcagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||    
T  17318415 taagctcgtctattgactcaattttcccataaacattagaaatgctatgagtttgctcgtcattgctcgcctagtaaaatgtcttgtacttacgattagc 17318316  T
Q  208 taggcaactatataaagcttctcgcttttcagtaactaataggtctcacaattaaaatatgaaagaaagtacacaaaagtttgtcccactatcttgaatt 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  17318315 taggcaactatataaagcttctcgcttttcagtgactaataggtctcacgattaaaatatgaaagaaagtagacaaaag-ttgtcccactatctcgaatt 17318217  T
Q  308 cttgtgattcttac 321  Q
    ||||||||||||||    
T  17318216 cttgtgattcttac 17318203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 645 - 806
Target Start/End: Complemental strand, 30805753 - 30805592
Alignment:
Q  645 agtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttg 744  Q
    ||||||||| ||||||||| |||  || |  |||||||||||| ||||||||  ||| |||||||||||||||||||||| || || ||||| ||| ||     
T  30805753 agtctgatgtagatcttcagcttacgagtgacatcctttcttctgatccaagatgttcacttctggttgacctttcttcagatcttctaccatagtgttt 30805654  T
Q  745 agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatg 806  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||    
T  30805653 agcttctcttgtgcttctcatgctcttatacatgtttagaccttgttaaattttaatctatg 30805592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 555 - 836
Target Start/End: Original strand, 33439048 - 33439329
Alignment:
Q  555 ttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctggtgatccttagagtctgatga 654  Q
    |||||||||||||||||| || | || |||| ||| ||||  ||| |||||| || |||||| ||||||||| |||  || | || | | |||||||||     
T  33439048 ttgatagagacaactacagaaaatgataaatttgacgtggcttctaggtcccgcaggatcttctgtacttcaaagt--ggaggtcttcaaagtctgatgc 33439145  T
Q  655 agatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctct 753  Q
    ||||||| | ||| ||| | || |||||||||| |||||||| ||||||||| ||||| ||||||| ||| || || ||||| ||||||  | |||||||    
T  33439146 agatctttagcttatgagttgcttcctttcttctgatccaagacgttgacttatggtttacctttcatcagatcttctaccaaagtcttttaacttctct 33439245  T
Q  754 t-gtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    | |||||| ||||||||||||||||||||| | ||| ||||| ||||||||||||||||||| | |||| ||||||||||||||    
T  33439246 ttgtgcttctgatgctcttatacatgttcatatctttttaaaatttaatctatggtcctgcacacttgatcatatattagcata 33439329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 438 - 534
Target Start/End: Complemental strand, 17316543 - 17316447
Alignment:
Q  438 ttgagaagcttcaaatcaaggacgttggactttgcatgatatattagacattcaaaattccttttctgaaactagaattattctttcattctctttg 534  Q
    ||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  17316543 ttgagaatcttcaaatcaagggcgttggtctttgcctgatatattagacattcaaaattccttttttgaaactagaattattctttcattttctttg 17316447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 352 - 432
Target Start/End: Complemental strand, 17318172 - 17318092
Alignment:
Q  352 aaatacacatattaaaatatatattagttgacctatttaatcgattcaaataatcttgaatcgtatcactctgaatcgatt 432  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  17318172 aaatacacatattaaaatatatattagttgacctatttaattgattcaaatagtcttgaatcgtatcactctgaatcgatt 17318092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 644 - 836
Target Start/End: Original strand, 12397971 - 12398166
Alignment:
Q  644 gagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtctt 743  Q
    |||||||||| ||||||||| ||| ||| |||| |  |||||||  ||||||| |||| ||||||||||||| |||||||| || || |||||  |||||    
T  12397971 gagtctgatgcagatcttcagcttttgagtagctttgtttcttctaatccaagacgtttacttctggttgacttttcttcagatcttctaccattgtctt 12398070  T
Q  744 g-agctt-ctctt-gtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
      ||||| || || ||| || |||||||||||||||  | ||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||    
T  12398071 ttagctttctatttgtgtttctgatgctcttatacacatccagaccttgttaaattttaatctatagtcatgcacacttgaacatatattagcata 12398166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 745 - 832
Target Start/End: Complemental strand, 17103174 - 17103087
Alignment:
Q  745 agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattag 832  Q
    |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |  ||||||||||||||    
T  17103174 agcttctcttgttcttctgatgctcttatacatgttcagaacttgttaaattttaatatatggtcctgcatacgtgaacatatattag 17103087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 699 - 834
Target Start/End: Original strand, 15440920 - 15441054
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaatttt 798  Q
    ||||||||||| |||||||||||||| || || ||  | | | || |||||||||||||||| |||||||||| || |||||||||| ||| ||||||||    
T  15440920 gttgacttctgattgacctttcttcagatcttctataa-attatttagcttctcttgtgcttctgatgctcttgtatatgttcagactttgataaatttt 15441018  T
Q  799 aatctatggtcctgcaaaattgaacatatattagca 834  Q
    ||| ||||||| |||| | || | ||||||||||||    
T  15441019 aatttatggtcatgcacacttaagcatatattagca 15441054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 748 - 814
Target Start/End: Complemental strand, 31584152 - 31584086
Alignment:
Q  748 ttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgca 814  Q
    ||||||||||||| ||||||||| ||| ||| |||||||||| ||||||||||||||||||||||||    
T  31584152 ttctcttgtgcttctgatgctctcatatatgctcagaccttgataaattttaatctatggtcctgca 31584086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 747 - 836
Target Start/End: Complemental strand, 14580470 - 14580381
Alignment:
Q  747 cttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||||| || |||| |||||||| || ||||||||||||||||||||||| | |||||||   |||||||||||||| ||||    
T  14580470 cttctcttgtgcttctggtgcttttatacatatttagaccttgttaaattttaatctaagatcctgcactcttgaacatatattaacata 14580381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 643 - 836
Target Start/End: Original strand, 26898245 - 26898440
Alignment:
Q  643 agagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtct 742  Q
    ||||||||||| ||||||||| ||||| | |||| |  ||||||| |||| || | ||||| || ||||| |||||||||   || || ||||| |||||    
T  26898245 agagtctgatgcagatcttcagcttctaagtagctttgtttcttctgatctaatgtgttga-ttatggttaacctttctttggatcttctaccatagtct 26898343  T
Q  743 tg--agcttctctt-gtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |   ||||| |||| |||||| ||||| | ||||||| |||||||| ||||||||||||||| |||||| ||||| | ||||||||| |||||||||    
T  26898344 ttttagcttttctttgtgcttctgatgtttttatacacgttcagactttgttaaattttaatttatggttctgcacatttgaacatacattagcata 26898440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 689 - 782
Target Start/End: Complemental strand, 15650929 - 15650834
Alignment:
Q  689 gatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtc--ttgagcttctcttgtgcttttgatgctcttatacatgttca 782  Q
    ||||||||  ||||||||||||||||||| ||||||||| || ||||||||||  || |||||||||||||||| ||||  | |||||||||||||    
T  15650929 gatccaagatgttgacttctggttgacctgtcttcatatcttctaccacagtcttttaagcttctcttgtgcttctgatattgttatacatgttca 15650834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 746 - 836
Target Start/End: Complemental strand, 1812582 - 1812492
Alignment:
Q  746 gcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||||||   ||||||| ||| ||||| |||||||| ||||||||||| ||||||| |||| | || ||||||||||||||||    
T  1812582 gcttctcttgtgcttcatatgctctcatatatgtttagaccttgataaattttaatttatggtcatgcacacttaaacatatattagcata 1812492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 738 - 836
Target Start/End: Original strand, 41029619 - 41029717
Alignment:
Q  738 agtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||| |||||||||| ||||| ||||| | | ||| |||||||||||||| ||||||||||| |||| ||||||| | || ||||||||| ||||||    
T  41029619 agtctttagcttctcttatgcttatgatgttatcatatatgttcagaccttgataaattttaatttatgatcctgcacacttaaacatatatcagcata 41029717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 745 - 836
Target Start/End: Original strand, 34188111 - 34188202
Alignment:
Q  745 agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||| ||| | ||||||||||| ||| |||  ||||| |||||| |||||||||||||||||    | ||||||||||||||||    
T  34188111 agcttctcttgtacttctaatgctcttatatatgatcaagccttgataaattataatctatggtcctgcacgcgtaaacatatattagcata 34188202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 681 - 779
Target Start/End: Complemental strand, 37283152 - 37283053
Alignment:
Q  681 tttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtc-ttgagcttctcttgtgcttttgatgctcttatacatgt 779  Q
    ||||||| || |||| | ||| |||||||||||||||||||||| || || ||||  |||| ||||||||||||| || |||||||||| | ||||||||    
T  37283152 tttcttctgaaccaatgtgttaacttctggttgacctttcttcagatcttctacctaagtctttgagcttctcttatgtttttgatgctttaatacatgt 37283053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 657 - 743
Target Start/End: Original strand, 22049549 - 22049635
Alignment:
Q  657 atcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtctt 743  Q
    |||||||| |||||| ||||||||||||||   |||||||  |||||| | ||||||||||||||||| || || ||||| ||||||    
T  22049549 atcttcattttctgagtagcatcctttcttttaatccaagatgttgacatatggttgacctttcttcagatcttctaccatagtctt 22049635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 836 - 876
Target Start/End: Complemental strand, 15787442 - 15787402
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaaa 876  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  15787442 aatactttgttatcatcaaaaccttagaggaattgtacaaa 15787402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 757 - 835
Target Start/End: Complemental strand, 2973535 - 2973457
Alignment:
Q  757 gcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcat 835  Q
    ||||| |||||||||||| || || ||| |||| ||||||||||| | ||||| |||| | || |||||||||||||||    
T  2973535 gctttagatgctcttatatatctttagagcttggtaaattttaatatttggtcatgcacacttaaacatatattagcat 2973457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 390 - 420
Target Start/End: Complemental strand, 13090543 - 13090513
Alignment:
Q  390 aatcgattcaaataatcttgaatcgtatcac 420  Q
    |||||||||||||||||||||||||||||||    
T  13090543 aatcgattcaaataatcttgaatcgtatcac 13090513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 836 - 878
Target Start/End: Complemental strand, 15650768 - 15650726
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    |||||||| |||||||||||| |||| ||||||||||||||||    
T  15650768 aatactttattatcatcaaaaccttagaggaattgtacaaacc 15650726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 790 - 835
Target Start/End: Original strand, 10751508 - 10751553
Alignment:
Q  790 ttaaattttaatctatggtcctgcaaaattgaacatatattagcat 835  Q
    |||||||||||||||| |||||||| | |||| |||||||||||||    
T  10751508 ttaaattttaatctatagtcctgcacacttgagcatatattagcat 10751553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 616
Target Start/End: Original strand, 22666383 - 22666444
Alignment:
Q  555 ttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatctt 616  Q
    |||||||| ||||||||| | || ||| ||||  |||||| |||||||||||||||||||||    
T  22666383 ttgatagaaacaactacagatgacgacgaatccaatgtggagtctgggtccctcaagatctt 22666444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 626
Target Start/End: Complemental strand, 30805848 - 30805755
Alignment:
Q  534 gacaaattctactatcagact-ttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttca 626  Q
    |||||||| |||||||||| | |||||||||||||||| | |||| ||||||||||| |||   || | |||| ||| |||||| |||||||||    
T  30805848 gacaaattgtactatcagagtattgatagagacaactatagaagatgacaaatctgacgtgaattccgagtccatcaggatcttctgtacttca 30805755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 533
Target Start/End: Complemental strand, 30805945 - 30805892
Alignment:
Q  480 attagacattcaaaattccttttctgaaactagaattattctttcattctcttt 533  Q
    ||||||||||| ||||||||||  ||||||||||||||| | |||||| |||||    
T  30805945 attagacattcgaaattcctttcatgaaactagaattatccgttcattgtcttt 30805892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 747 - 836
Target Start/End: Complemental strand, 43282252 - 43282164
Alignment:
Q  747 cttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||||||||  |||||||||||| ||| ||| | |||| ||| |||||||| ||||| ||||| | || ||||||||||| ||||    
T  43282252 cttctcttgtgcttcagatgctcttatatatgctcaaaacttgataagttttaatccatggt-ctgcacacttaaacatatattatcata 43282164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 2e-76; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 568 - 836
Target Start/End: Original strand, 19143704 - 19143973
Alignment:
Q  568 ctacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctggtgatccttagagtctgatgaagatcttcatctt 667  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| | ||| ||| | || ||||||||||||||| | |||||  ||    
T  19143704 ctacagaagaggacaaatctgatgtagtgtctgggtccctcaagatcttatgtacttaatagtttggaggtctttagagtctgatgaaaaacttcagatt 19143803  T
Q  668 ctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtc-ttgagcttctcttgtgcttttgatg 766  Q
    | || | ||||||||||||| |||||||||| ||||||||||||||| |||||||||||| || | ||  |||| ||||| ||||||||||||| | |||    
T  19143804 cggagtggcatcctttcttctgatccaaggcattgacttctggttgaactttcttcatatattcttccgtagtctttgagattctcttgtgcttctaatg 19143903  T
Q  767 ctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  19143904 ctcttatacatgttcagaccttgttaaattttaatctatggtccttcacaattgaacatatattagcata 19143973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 568 - 836
Target Start/End: Original strand, 20743103 - 20743372
Alignment:
Q  568 ctacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctggtgatccttagagtctgatgaagatcttcatctt 667  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| | ||| ||| | || ||||||||||||||| | |||||  ||    
T  20743103 ctacagaagaggacaaatctgatgtagtgtctgggtccctcaagatcttatgtacttaatagtttggaggtctttagagtctgatgaaaaacttcagatt 20743202  T
Q  668 ctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtc-ttgagcttctcttgtgcttttgatg 766  Q
    | || | ||||||||||||| |||||||||| ||||||||||||||| |||||||||||| || | ||  |||| ||||| ||||||||||||| | |||    
T  20743203 cggagtggcatcctttcttctgatccaaggcattgacttctggttgaactttcttcatatattcttccgtagtctttgagattctcttgtgcttctaatg 20743302  T
Q  767 ctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  20743303 ctcttatacatgttcagaccttgttaaattttaatctatggtccttcacaattgaacatatattagcata 20743372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 534 - 806
Target Start/End: Original strand, 32957691 - 32957964
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 633  Q
    |||||||| || ||||||| ||||||||||||||||| | || ||||||||||||| |||  ||||| |||||||||||||||||| |||||||| | ||    
T  32957691 gacaaattgtattatcagattttgatagagacaactatagaaaaggacaaatctgacgtgaagtctgagtccctcaagatcttttgcacttcagattttg 32957790  T
Q  634 gtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatatttttta 733  Q
    | | || | ||||||||||| ||||||||| ||||||| || |||| |||||||  |||||| | ||| |||||||| ||||||||||||| || |  ||    
T  32957791 gaggtcttaagagtctgatgtagatcttcagcttctgagtaacatcttttcttctcatccaatgtgttaacttctggctgacctttcttcagatctaata 32957890  T
Q  734 ccacagtc-ttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatg 806  Q
    ||| |||| |||||||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||| ||||    
T  32957891 ccatagtctttgagcttctctcgtgtttctgatgctctcatacatgttcaaaccttgttaaattttaatatatg 32957964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 534 - 836
Target Start/End: Complemental strand, 27707329 - 27707010
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 633  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||||||| |||  ||  |||||||||||||||||||||    ||||| |||| ||    
T  27707329 gacaaattgtactattagactttgatagagacaactacaaaagaggacaaatttgacatgaagtctgggtccctcaagatcttcgacacttccgagtttg 27707230  T
Q  634 gtgatccttagagtctgatg----------------aagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacct 717  Q
    | | || ||||||||| |||                |||||||||| |||||||  | || ||||||||  |||||||| |||||||||||  |||||||    
T  27707229 gaggtctttagagtctaatggacttcagagttcacgaagatcttcaccttctgagcaacaccctttcttttgatccaagacgttgacttctacttgacct 27707130  T
Q  718 ttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaa 816  Q
    || |||| || || ||||| |||||| ||| ||||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||||| ||||      
T  27707129 ttattcagatcttctaccatagtctttgagtttctcttgtgcttctgatgctcttatacatgttcatgccttgttaaattttaatttatggtcttgcacg 27707030  T
Q  817 attgaacatatattagcata 836  Q
     ||||||||  |||||||||    
T  27707029 cttgaacattaattagcata 27707010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 534 - 634
Target Start/End: Original strand, 8105747 - 8105847
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 633  Q
    |||||| | |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8105747 gacaaactgtactatcagactttgatagagacaactacaaaagaagactaatctgatgtggtgtctgggtccctcaagatcttctgtacttcagagtctg 8105846  T
Q  634 g 634  Q
    |    
T  8105847 g 8105847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 700 - 836
Target Start/End: Complemental strand, 10646652 - 10646515
Alignment:
Q  700 ttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaatttt 798  Q
    ||||||| |||||||| |||||||| || |||||||| ||||||  ||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  10646652 ttgacttatggttgacatttcttcagatcttttaccatagtcttttagcttctcttgtgtttctgatgctcttatacatgttcagaccttgttaaatttt 10646553  T
Q  799 aatctatggtcctgcaaaattgaacatatattagcata 836  Q
    | | |||||||||||| | |||||||||| ||| ||||    
T  10646552 attatatggtcctgcacacttgaacatatgttaacata 10646515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 622 - 836
Target Start/End: Complemental strand, 17891303 - 17891089
Alignment:
Q  622 cttcagagtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttct 721  Q
    |||||||||||| || || ||||| |||||||  ||||||||  |||| | |||| |  ||||||| |||||||||||||||||||  |||||| | |||    
T  17891303 cttcagagtctgatgctcattagaatctgatgcggatcttcagtttctaagtagcttg-tttcttctgatccaaggcgttgacttcaagttgacatatct 17891205  T
Q  722 tcatattttttaccacagtcttg-agcttctcttg-tgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaatt 819  Q
    ||| || || ||||| ||||||  ||||||||||| ||||| ||||||||||||||  ||||| ||||||||||||||||||||||||||||||| |  |    
T  17891204 tcagatcttctaccatagtcttttagcttctcttggtgcttctgatgctcttataccagttcataccttgttaaattttaatctatggtcctgcacacct 17891105  T
Q  820 gaacatatattagcata 836  Q
     ||||||||||||||||    
T  17891104 -aacatatattagcata 17891089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 689 - 836
Target Start/End: Original strand, 8105909 - 8106057
Alignment:
Q  689 gatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgttcagacct 787  Q
    |||||||| ||||||||||||||||||||||||||| || || ||||| ||| || |||||| |||||| ||| | || |||||||||||||||| ||||    
T  8105909 gatccaagacgttgacttctggttgacctttcttcagatattctaccatagtttttgagcttttcttgttcttctaattctcttatacatgttcatacct 8106008  T
Q  788 tgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||| ||||| |||||||||||| | |  || |||||||||||||    
T  8106009 tgttaaatattaatatatggtcctgcacactataagatatattagcata 8106057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 534 - 831
Target Start/End: Original strand, 1783101 - 1783399
Alignment:
Q  534 gacaaattctactatcagact-ttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtct 632  Q
    |||||||| |||||||||| | ||||| |||||| ||||| |||||||||||| ||| |||   ||||||||||||| |||  | | | | |||||||||    
T  1783101 gacaaattgtactatcagagtcttgattgagacatctacagaagaggacaaatatgacgtgtcttctgggtccctcatgattctatattcctcagagtct 1783200  T
Q  633 ggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatatttttt 732  Q
    | || || |   ||||||||| |||| |||| |||||||    | |||||||||| |||||||    |||||||||| |||||||||||| | || |||     
T  1783201 gatggtcttccaagtctgatgcagattttcaacttctgagcgacttcctttcttctgatccaacatattgacttctgattgacctttctttagatcttta 1783300  T
Q  733 accacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatatta 831  Q
    |||| ||||||  || ||||||||||||| | |||||||||||||||||||  |||||||||||||| || |||| ||||||| | ||||||| ||||||    
T  1783301 accatagtcttttagtttctcttgtgcttctaatgctcttatacatgttcattccttgttaaatttt-atttatgatcctgcacacttgaacacatatta 1783399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 751 - 836
Target Start/End: Original strand, 5265583 - 5265668
Alignment:
Q  751 tcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||| | || ||||||||||| ||||    
T  5265583 tcttgtgcttttgatgctcttatacatgtttagaccttgttaaattttattctatgaacctgcatactttaacatatattaacata 5265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 628 - 724
Target Start/End: Original strand, 26822520 - 26822616
Alignment:
Q  628 agtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttca 724  Q
    |||||| ||||| |||||||||||||| | |||||| ||||||| || |||||||||||  ||||||||| ||| ||||||||||||||||||||||    
T  26822520 agtctgatgatctttagagtctgatgaggttcttcagcttctgagtaacatcctttcttttgatccaaggtgtttacttctggttgacctttcttca 26822616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 683 - 829
Target Start/End: Original strand, 24865653 - 24865799
Alignment:
Q  683 tcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttc 781  Q
    ||||| ||||||| |  |||||||||| ||||||||||||||||| || ||||| ||| ||  | |||||||||||||| |||||||| |||| ||||||    
T  24865653 tcttctgatccaaagtattgacttctgattgacctttcttcatatcttctacca-agtattttaacttctcttgtgcttctgatgctcatatatatgttc 24865751  T
Q  782 agaccttgttaaattttaatctatggtcctgcaaaattgaacatatat 829  Q
    |||  ||||||||||||||| |||| ||||||| | |||| |||||||    
T  24865752 agattttgttaaattttaatttatgatcctgcatacttgaccatatat 24865799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 683 - 800
Target Start/End: Complemental strand, 23022490 - 23022373
Alignment:
Q  683 tcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttc 781  Q
    ||||| ||||||| |  ||||||||| |||||||||||||||||| || ||||| ||||||  |||||||||| ||||| ||||| ||||||| ||||||    
T  23022490 tcttctgatccaaagttttgacttctagttgacctttcttcatatcttctacca-agtcttctagcttctcttttgcttatgatgttcttatatatgttc 23022392  T
Q  782 agaccttgttaaattttaa 800  Q
    |||||||| ||||||||||    
T  23022391 agaccttgataaattttaa 23022373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 679 - 794
Target Start/End: Original strand, 15053381 - 15053496
Alignment:
Q  679 cctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttgagctt-ctcttgtgcttttgatgctcttatacat 777  Q
    ||||||||  ||||||||| |||||||| |||||||| ||| ||||||| || ||||| ||||||   ||| | ||||||||| ||||| ||||||||||    
T  15053381 cctttcttttgatccaaggagttgacttttggttgacattt-ttcatatcttctaccatagtcttttactttcacttgtgcttatgatgttcttatacat 15053479  T
Q  778 gttcagaccttgttaaa 794  Q
    |||||||||||||||||    
T  15053480 gttcagaccttgttaaa 15053496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 543 - 630
Target Start/End: Original strand, 5265358 - 5265445
Alignment:
Q  543 tactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagt 630  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||| ||||  |||||||||||||   |||| |||||||| ||||    
T  5265358 tactatcagagtttgatagagacaactacagaagaagacaaatctgacgtggcttctgggtccctcagagtcttatgtacttcggagt 5265445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 828
Target Start/End: Original strand, 956830 - 956959
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaatttt 798  Q
    |||||||| ||||||| ||||||||| || || ||||| | | || ||||||||| ||| || ||||| |||  || ||||||| |||||| ||||||||    
T  956830 gttgacttatggttgatctttcttcagatcttctaccaaattttttagcttctctcgtgtttctgatgttctcgtatatgttcaaaccttgataaatttt 956929  T
Q  799 aatctatggtcctgcaaaattgaacatata 828  Q
    ||| |||| ||||||| | || ||||||||    
T  956930 aatttatgttcctgcacacttaaacatata 956959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 699 - 832
Target Start/End: Original strand, 8259627 - 8259762
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtc-ttgagcttctcttgtgcttttgatgctc-ttatacatgttcagaccttgttaaatt 796  Q
    |||||||| ||||||||||||| |||||| || ||||| |||| || |||||||| |||||||||||||| | ||||| |||||  ||||||| |||||     
T  8259627 gttgacttatggttgacctttcatcatatcttctacca-agtcttttagcttctcatgtgcttttgatgcgctttatatatgtttggaccttgataaatg 8259725  T
Q  797 ttaatctatggtcctgca-aaattgaacatatattag 832  Q
    ||||| ||| || ||||| |||||  |||||||||||    
T  8259726 ttaatatatagttctgcacaaattagacatatattag 8259762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 703 - 766
Target Start/End: Original strand, 22975580 - 22975645
Alignment:
Q  703 acttctggttgacctttcttcatattttttaccacagtc--ttgagcttctcttgtgcttttgatg 766  Q
    |||||||||||||||||||||| || |||||||| ||||  |||||||||| |||||||| |||||    
T  22975580 acttctggttgacctttcttcagatcttttaccatagtcttttgagcttctattgtgcttctgatg 22975645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 764 - 836
Target Start/End: Complemental strand, 11608926 - 11608854
Alignment:
Q  764 atgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||||| ||||||||| |||| |||| ||||||||||| ||||||| | || |||| | |||||||||    
T  11608926 atgctcttatatatgttcagaacttgataaaatttaatctatgctcctgcatactttaacacaaattagcata 11608854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 610
Target Start/End: Complemental strand, 7185628 - 7185573
Alignment:
Q  555 ttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaa 610  Q
    |||||||||||||||||| |||| |||||| |||| |||| |||| ||||||||||    
T  7185628 ttgatagagacaactacagaagatgacaaaactgacgtggagtctaggtccctcaa 7185573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 835 - 878
Target Start/End: Original strand, 8106071 - 8106114
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    |||||||||||||||||||||| | || ||||||||||||||||    
T  8106071 taatactttgttatcatcaaaaccctagaggaattgtacaaacc 8106114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 390 - 427
Target Start/End: Original strand, 10375469 - 10375507
Alignment:
Q  390 aatcgattcaaataa-tcttgaatcgtatcactctgaat 427  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  10375469 aatcgattcaaataagtcttgaatcgtatcactctgaat 10375507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 480 - 534
Target Start/End: Complemental strand, 10646881 - 10646827
Alignment:
Q  480 attagacattcaaaattccttttctgaaactagaattattctttcattctctttg 534  Q
    ||||||||||  |||||||||||||| |||| ||||||||  |||||||||||||    
T  10646881 attagacatttgaaattccttttctgtaactggaattatttgttcattctctttg 10646827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 836
Target Start/End: Complemental strand, 1878043 - 1877998
Alignment:
Q  791 taaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||| |||||||||||||| | ||||||| |||||||||||    
T  1878043 taaattttactctatggtcctgcacacttgaacaaatattagcata 1877998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 835 - 876
Target Start/End: Original strand, 12341718 - 12341759
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgtacaaa 876  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||    
T  12341718 taatactttgttatcatcaaaattttagaggcattgtacaaa 12341759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 3e-72; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 534 - 836
Target Start/End: Original strand, 28890388 - 28890695
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 633  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  28890388 gacaaattgtatgatcagactttgatagagacaactacataagaggatgaatctgacgtggtgtctaggtccctcaagatcttttgtactttagagtctg 28890487  T
Q  634 gtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacc----tttcttcatattt 729  Q
    | | || | | ||||||||| ||||||||| ||   || || ||||||| |||| ||||||||||||| | ||||||||||||    ||||||||||| |    
T  28890488 gaggtcttcaaagtctgatgtagatcttcagctaacgagtaacatccttacttctgatccaaggcgttaatttctggttgaccttaatttcttcatatct 28890587  T
Q  730 tttaccacagtc-ttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatata 828  Q
    | ||||| | || |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | || || |||||    
T  28890588 tctaccaaactctttgagcttttcttctgcttttgatgctcttatacatgtccagaccttgttgaattttaatctatggtcctgcacacttaaatatata 28890687  T
Q  829 ttagcata 836  Q
    ||||||||    
T  28890688 ttagcata 28890695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 534 - 836
Target Start/End: Complemental strand, 23584921 - 23584618
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 633  Q
    |||||| | |||||||||||||||||||||||| ||||| |||| ||||||||| | | || ||||| |||||||||  |||| ||||||||||||| ||    
T  23584921 gacaaagtgtactatcagactttgatagagacagctacaaaagaagacaaatctaacgcggagtctgagtccctcaaactcttctgtacttcagagtttg 23584822  T
Q  634 gtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatatttttta 733  Q
    | | || | |||  |||||| ||||||||| ||||||| || |||||||||||| ||| |||||| ||||||||| |||||||||| |||| || || ||    
T  23584821 gaggtcttcagaacctgatgtagatcttcagcttctgagtatcatcctttcttctgattcaaggcattgacttctagttgacctttgttcagatcttcta 23584722  T
Q  734 ccacagtc-ttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattag 832  Q
    ||| |||| ||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||  | |||||||||||||||    
T  23584721 ccatagtctttgagtttctcttgtgcttatgatgctcttatacatgttcaaaccttattaaattttaatcaatggtcctgcgcacttgaacatatattag 23584622  T
Q  833 cata 836  Q
    ||||    
T  23584621 cata 23584618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 658 - 830
Target Start/End: Complemental strand, 24308765 - 24308592
Alignment:
Q  658 tcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttgt 756  Q
    |||||| ||| ||| ||||||||||||||  ||||||||| |||||||||||||||||||||||| | || || ||||| |||||| || |||||||||     
T  24308765 tcttcaacttttgagtagcatcctttcttttgatccaaggtgttgacttctggttgacctttctttagatcttctaccatagtctttgatcttctcttgg 24308666  T
Q  757 gcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatatt 830  Q
     | | ||||||||||||||||||||| |||||||||||||||||| |||||||||||  | |||||||||||||    
T  24308665 acatctgatgctcttatacatgttcaaaccttgttaaattttaatttatggtcctgcgcacttgaacatatatt 24308592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 678 - 836
Target Start/End: Complemental strand, 25724512 - 25724353
Alignment:
Q  678 tcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctcttataca 776  Q
    |||||||||| | |||||   ||| ||||||| ||||||||||||||||| || ||||| ||| ||  | ||| |||| || || |||||||||||||||    
T  25724512 tcctttcttctggtccaaaatgttaacttctgattgacctttcttcatatcttctaccaaagtattttaacttatcttatgtttctgatgctcttataca 25724413  T
Q  777 tgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||| |||||||||||||||||||| |||||||||||| | |||||||||||||| ||||    
T  25724412 tgtttagaccttgttaaattttaatttatggtcctgcacagttgaacatatattatcata 25724353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 745 - 836
Target Start/End: Complemental strand, 18527907 - 18527816
Alignment:
Q  745 agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||||||| | || ||||||| ||||||||    
T  18527907 agcttctcttgtgcttctgatgctcttatatatgttcagaccttgataaattttaatctatgatcctgcacacttaaacatattttagcata 18527816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 752 - 836
Target Start/End: Complemental strand, 7321152 - 7321068
Alignment:
Q  752 cttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||| |||| | || ||||||||||||||||    
T  7321152 cttgtgcttctgatgctctcatacatgttcagaccttgatgaattttaatctatggtcgtgcacacttaaacatatattagcata 7321068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 703 - 808
Target Start/End: Complemental strand, 25727367 - 25727261
Alignment:
Q  703 acttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaat 801  Q
    ||||||| |||||||||||||| || || || || ||| ||  | ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  25727367 acttctgattgacctttcttcagatcttctagcaaagtattttaacttatcttatgcttctgatgctcttatacatgttcagaccttgttaaattttaat 25727268  T
Q  802 ctatggt 808  Q
    |||||||    
T  25727267 ctatggt 25727261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 703 - 836
Target Start/End: Original strand, 24122057 - 24122189
Alignment:
Q  703 acttctggttgacctttcttcatattttttaccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatc 802  Q
    |||| ||||| ||||||||||| || || ||| | |||||| | ||||||||||||||  ||| |||| ||| ||||||| | |||| ||||||||||||    
T  24122057 acttttggttaacctttcttcaaatcttctacta-agtctttaccttctcttgtgcttcagatactctcatatatgttcataacttgataaattttaatc 24122155  T
Q  803 tatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||| | ||||||| |||||||||||    
T  24122156 tatggtcctgcacacttgaacacatattagcata 24122189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 748 - 836
Target Start/End: Complemental strand, 24276981 - 24276893
Alignment:
Q  748 ttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||| ||||| |  |  ||||||||||||| ||||    
T  24276981 ttctcttgtgcttctgatgctcttatacatgttcagaccttgttaaaaattaatctattgtcctacgcacatgaacatatattaacata 24276893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 699 - 811
Target Start/End: Complemental strand, 28800614 - 28800503
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaatttt 798  Q
    ||||||||||||||||||||| ||||||| || ||  | |||||| |||||||||||| |||   ||| ||||||| ||||||||| ||||  |||||||    
T  28800614 gttgacttctggttgaccttttttcatatcttctat-agagtctttagcttctcttgtacttcaaatgatcttatatatgttcagaacttgacaaatttt 28800516  T
Q  799 aatctatggtcct 811  Q
    |||||||||||||    
T  28800515 aatctatggtcct 28800503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 751 - 836
Target Start/End: Original strand, 12863724 - 12863809
Alignment:
Q  751 tcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||| |||||| |||||||||||| |||||||||||||  ||||||||||| |||||||||||| | || |||| |||||| ||||    
T  12863724 tcttttgctttagatgctcttatatatgttcagaccttaataaattttaatatatggtcctgcacacttaaacacatattaacata 12863809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 835 - 878
Target Start/End: Complemental strand, 24308572 - 24308529
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  24308572 taatactttgttatcatcaaaaccttagaggaattgtacaaacc 24308529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 836
Target Start/End: Complemental strand, 1208462 - 1208417
Alignment:
Q  791 taaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||| |||||||||||||| | ||||||| |||||||||||    
T  1208462 taaattttagtctatggtcctgcacacttgaacaaatattagcata 1208417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 3e-66; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 534 - 878
Target Start/End: Complemental strand, 14427230 - 14426883
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 633  Q
    |||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| || ||||||||| | ||||||||||||||||  ||    
T  14427230 gacaaattgtactatcagactttgatagagacaactacagaagaagacaaatctgacgtggtgtatgagtccctcaataacttttgtacttcagagcatg 14427131  T
Q  634 gtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatatttttta 733  Q
     || || | ||| ||||||| ||||||||| ||||| | ||| |||||||||||  || ||||||||||||||||||||||  |||||||| || |        
T  14427130 atggtcttcagattctgatgtagatcttcaacttctaagtagtatcctttcttctaattcaaggcgttgacttctggttgatatttcttcagatct---- 14427035  T
Q  734 ccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagc 833  Q
            ||||||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||| |||||||||| | ||||||||||||||||    
T  14427034 --------ttgagcttctcctgtgcttctgatgctcttatacattttcagactttgttaaattttaatctttggtcctgcacacttgaacatatattagc 14426943  T
Q  834 a---------------taatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    |               ||||||||||||||||||||||||||| ||||||||||||||||    
T  14426942 atatccaattgttctttaatactttgttatcatcaaaatcttagaggaattgtacaaacc 14426883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 641 - 832
Target Start/End: Complemental strand, 38076256 - 38076064
Alignment:
Q  641 ttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagt 740  Q
    ||||||||||||| ||||||||| ||||||| |  | |||||||||| ||||||||| || ||||||||||||||||||||||| || || ||||| |||    
T  38076256 ttagagtctgatgcagatcttcagcttctgagtgacttcctttcttctgatccaaggtgtcgacttctggttgacctttcttcaaatcttctaccatagt 38076157  T
Q  741 ct-tgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattag 832  Q
    || | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||  |||| | |||| ||||||||||    
T  38076156 ctattagcttctattgtgcttctgatgctcttatacatgttcagaccttgttaaattttaatatatggttatgcacacttgagcatatattag 38076064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 667 - 836
Target Start/End: Original strand, 17119259 - 17119430
Alignment:
Q  667 tctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttga-gcttctcttgtgcttttgat 765  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||||| || || ||||| |||||| | | ||||||||||||| ||||    
T  17119259 tctgagtagcatcctttcttctgatccaaggtgttgacttctggttgaccttccttcagatcttctaccatagtctttaagtttctcttgtgcttctgat 17119358  T
Q  766 gctctt-atacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||| ||||    
T  17119359 gctctttatacatgttcagactttgttaaattttaatctatggtcctgcacacttaaacatatattaacata 17119430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 555 - 836
Target Start/End: Original strand, 4514795 - 4515078
Alignment:
Q  555 ttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctggtgatccttagagtctgatga 654  Q
    |||||| ||||  |||||||||||||||||| ||| | ||  ||| ||||||| | | |||| | | ||||||||| ||| | |  | |||||||||||     
T  4514795 ttgataaagactgctacataagaggacaaatttgacgaggattctaggtccctaagggtcttctattcttcagagtttggaggttttcagagtctgatgt 4514894  T
Q  655 agatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttgag-cttctct 753  Q
    ||||||| | ||||||| |    ||||||||   ||||||||| ||||||||||||||||| |||||| | || || ||||| ||||||  | |||||||    
T  4514895 agatctttaacttctgagtgttttcctttctattgatccaaggtgttgacttctggttgacatttctttagatcttctaccatagtcttttggcttctct 4514994  T
Q  754 t-gtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| ||||    
T  4514995 ttgtgcttctgatgctcttatacatgttcagaccttgttaaattttaatatatggtcctgcacacttgaacatatattaacata 4515078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 643 - 774
Target Start/End: Complemental strand, 5554817 - 5554685
Alignment:
Q  643 agagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtc- 741  Q
    ||||||||||||||||||||| ||||| | || |||||||||||| |||| ||||||||||||| ||||||||||||||||| || || ||||| ||||     
T  5554817 agagtctgatgaagatcttcaacttctaagtaacatcctttcttctgatcgaaggcgttgacttttggttgacctttcttcagatcttctaccatagtct 5554718  T
Q  742 ttgagcttctcttgtgcttttgatgctcttata 774  Q
    ||||||||||||||||||| |||||||||||||    
T  5554717 ttgagcttctcttgtgcttctgatgctcttata 5554685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 699 - 836
Target Start/End: Original strand, 9796435 - 9796573
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattt 797  Q
    ||||||||||| |||| ||||||||| || || ||||  || |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  9796435 gttgacttctgattgaactttcttcagatcttctaccgtagccttgtagcttcttttgtgcttctgatgctcttatacatgttcagaccttgttaaattt 9796534  T
Q  798 taatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||| ||||||| | |||||||||||||| ||||    
T  9796535 taatctatgatcctgcacacttgaacatatattaacata 9796573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 641 - 836
Target Start/End: Complemental strand, 4767587 - 4767391
Alignment:
Q  641 ttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagt 740  Q
    |||||||||||||||  |||| | ||||||| || |||  ||||||| |||| |||| |||||||||||||||||||||||| | || || ||  | |||    
T  4767587 ttagagtctgatgaaagtctttagcttctgagtatcataatttcttctgatctaaggtgttgacttctggttgacctttctttagatcttctataaaagt 4767488  T
Q  741 ctt-gagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
     || |||||||||  |||| | || |||| |||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||||||||||||    
T  4767487 ttttgagcttctcgcgtgcatatggtgctgttatacatgttcagaccttgttaaatttaaatctatcgtcctgcacacttgaacatatattagcata 4767391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 689 - 836
Target Start/End: Complemental strand, 17637351 - 17637203
Alignment:
Q  689 gatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttga-gcttctcttgtgcttttgatgctcttatacatgttcagacct 787  Q
    |||||||||| ||||||| | |||||||||| ||||||| |||||||| ||||||   |||| |||||||||| ||||||| || |||||||||||||||    
T  17637351 gatccaaggcattgactttttgttgaccttttttcatatcttttaccatagtctttttgcttatcttgtgcttctgatgcttttgtacatgttcagacct 17637252  T
Q  788 tgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||| ||||||||| |||||| || || | |||||||||||| ||||||    
T  17637251 tgtttaattttaatatatggttctccatacttgaacatatatcagcata 17637203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 681 - 809
Target Start/End: Original strand, 14332529 - 14332659
Alignment:
Q  681 tttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtc-ttgagcttctcttgtgcttttgatgctc-ttatacatg 778  Q
    |||||||  ||| ||||||||||||||||||||||||||||| | || || ||||| |||| || |||||||| ||||||| | |||||| |||||||||    
T  14332529 tttcttcttatctaaggcgttgacttctggttgacctttctttagatcttctaccatagtcttttagcttctcatgtgcttataatgctctttatacatg 14332628  T
Q  779 ttcagaccttgttaaattttaatctatggtc 809  Q
    |||| ||||||||||| ||||||| ||||||    
T  14332629 ttcaaaccttgttaaaatttaatcaatggtc 14332659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 534 - 836
Target Start/End: Complemental strand, 13291696 - 13291394
Alignment:
Q  534 gacaaattctactatcaga-ctttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtct 632  Q
    |||||||| |||||||||  | || ||||||||| ||||| ||||||| |||||||| ||||  | ||||||||||| |||||| |||||||||||||||    
T  13291696 gacaaattgtactatcagtgcctttatagagacatctacaaaagaggataaatctgacgtggcttttgggtccctcaggatcttctgtacttcagagtct 13291597  T
Q  633 ggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatatttttt 732  Q
    | || || | | | ||||||| ||||||||| |||||   |  | | |||||||| ||||||||  ||||||||||| ||| ||||| || | ||  |      
T  13291596 gatgctcttcataatctgatgtagatcttcaacttcttcgtgactttctttcttctgatccaagatgttgacttctgattg-cctttttttagatcatca 13291498  T
Q  733 accacagtc-ttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatatta 831  Q
    |||   ||| || || || | |||||||| ||||||||||||  |||||||||  |||||||| |||||||| |||||||||| | ||||||||||||||    
T  13291497 accttggtcttttagtttattttgtgcttctgatgctcttatttatgttcagattttgttaaa-tttaatctttggtcctgcacacttgaacatatatta 13291399  T
Q  832 gcata 836  Q
     ||||    
T  13291398 acata 13291394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 747 - 836
Target Start/End: Complemental strand, 17034264 - 17034175
Alignment:
Q  747 cttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||| | |||||||||||||||||||||||| |||||||||||| |||||||||| || |||| | |||||||| ||||| ||||    
T  17034264 cttctcttgagtttttgatgctcttatacatgttcaaaccttgttaaatattaatctatgatcgtgcacacttgaacatgtattaacata 17034175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 699 - 768
Target Start/End: Complemental strand, 16198839 - 16198769
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtc-ttgagcttctcttgtgcttttgatgct 768  Q
    ||||||||||||||||||||||||||||| || ||||| |||| ||||||||||| ||||||| |||||||    
T  16198839 gttgacttctggttgacctttcttcatatcttctaccaaagtctttgagcttctcatgtgcttatgatgct 16198769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 641 - 802
Target Start/End: Complemental strand, 19306858 - 19306694
Alignment:
Q  641 ttagagtctgatgaagatcttcatcttctgattagcatcctttcttccga-tccaaggcgttgacttctggttgacctttcttcatattttttaccacag 739  Q
    ||||||| ||||| ||||||||  ||||||||| ||||||||| ||   | ||||||||||| ||||| |||| |||||| ||||  | || ||||| ||    
T  19306858 ttagagtttgatgtagatcttcggcttctgattggcatcctttttttttaatccaaggcgttaacttccggttcacctttattcagttcttctaccatag 19306759  T
Q  740 tcttg-agcttctctt-gtgcttttgatgctcttatacatgttcagaccttgttaaattttaatc 802  Q
    ||||  ||||| |||| || ||||||||| ||||||||||||| ||| ||| |||||||||||||    
T  19306758 tcttttagcttttctttgtacttttgatgttcttatacatgtttagatctttttaaattttaatc 19306694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 748 - 831
Target Start/End: Original strand, 4244316 - 4244399
Alignment:
Q  748 ttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatatta 831  Q
    |||||||||||||  |||||||| ||| ||||||||| |||| |||||||||||||||| || |||| | ||||||| ||||||    
T  4244316 ttctcttgtgcttcagatgctctcatatatgttcagaacttgataaattttaatctatgatcttgcacacttgaacacatatta 4244399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 681 - 809
Target Start/End: Original strand, 14252235 - 14252365
Alignment:
Q  681 tttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctctt-atacatg 778  Q
    |||||||  ||| |||| ||| |||||| ||||||||||||| | || || ||||| ||||||  ||||||||  |||||| | |||||||| |||||||    
T  14252235 tttcttcttatcaaaggagttaacttctagttgacctttctttagatcttctaccatagtcttttagcttctcaagtgcttctaatgctctttatacatg 14252334  T
Q  779 ttcagaccttgttaaattttaatctatggtc 809  Q
    |||| ||||||||||| ||||||| ||||||    
T  14252335 ttcaaaccttgttaaaatttaatcaatggtc 14252365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 17119115 - 17119195
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatc 614  Q
    |||||||| ||||| || ||| ||||||||  |||||||||||||||||||||| | | || |||||| ||||||||||||    
T  17119115 gacaaattgtactagcatactctgatagaggtaactacataagaggacaaatcttacgcggagtctggatccctcaagatc 17119195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 835 - 878
Target Start/End: Complemental strand, 4767377 - 4767334
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  4767377 taatactttgttatcatcaaaaccttagaggaattgtacaaacc 4767334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 534 - 632
Target Start/End: Original strand, 10929054 - 10929149
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtct 632  Q
    |||||||| || |||| |||||||| || |||||||||| ||||||| |||||| | |||| ||  || ||||||||||| ||||||||||||||||||    
T  10929054 gacaaattgtattatc-gactttgacagtgacaactacaaaagaggaaaaatctaaggtggcgt--ggatccctcaagatattttgtacttcagagtct 10929149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 769 - 836
Target Start/End: Complemental strand, 20311464 - 20311397
Alignment:
Q  769 cttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||| || | |||||||||||||||| | ||||||| |||| | |||||||||||||||||||    
T  20311464 cttatacatattgataccttgttaaattttattttatggtcatgcacacttgaacatatattagcata 20311397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 619
Target Start/End: Complemental strand, 4767743 - 4767658
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttg 619  Q
    |||||| | ||| |||||||||||| || |||||||| | ||| ||| |||||||| ||||  ||||||||||| |||||||||||    
T  4767743 gacaaactgtaccatcagactttgaaagtgacaactatagaagtggaaaaatctgacgtggactctgggtcccttaagatcttttg 4767658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 814
Target Start/End: Complemental strand, 5638509 - 5638397
Alignment:
Q  701 tgacttctggttgacctttcttcatattttttaccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaa 800  Q
    |||| |||||||||||||| ||||||| || ||  | | |||| ||||||| ||||| ||  || | ||||||| ||||||||| |||| ||||||||||    
T  5638509 tgacctctggttgacctttattcatatcttctataata-tctttagcttctattgtgtttcagaagatcttatatatgttcagaacttgataaattttaa 5638411  T
Q  801 tctatggtcctgca 814  Q
    ||||| ||||||||    
T  5638410 tctattgtcctgca 5638397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 533
Target Start/End: Original strand, 10928957 - 10929010
Alignment:
Q  480 attagacattcaaaattccttttctgaaactagaattattctttcattctcttt 533  Q
    ||||||||||||||||||| || |||||||| ||||||| | ||||||||||||    
T  10928957 attagacattcaaaattccattgctgaaactggaattatccattcattctcttt 10929010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 698 - 743
Target Start/End: Complemental strand, 15331126 - 15331081
Alignment:
Q  698 cgttgacttctggttgacctttcttcatattttttaccacagtctt 743  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||    
T  15331126 cgttgacttctggttgaccttccttcatatcttttaccatagtctt 15331081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 836 - 876
Target Start/End: Complemental strand, 38076045 - 38076005
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaaa 876  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  38076045 aatactttgttgtcatcaaaatcttagaggaattgtacaaa 38076005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 835 - 878
Target Start/End: Complemental strand, 5554671 - 5554628
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||    
T  5554671 taatattttgttatcatcaaaaacttagaggaattgtacaaacc 5554628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 836
Target Start/End: Original strand, 11044944 - 11045026
Alignment:
Q  753 ttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||||||||| |||||| ||||||||| |||  || ||||||||||||  || |||| | || ||||||||||||||||    
T  11044944 ttgtgcttttgatgcccttatatatgttcagaactt-atatattttaatctataatcatgcacacttaaacatatattagcata 11045026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 835 - 878
Target Start/End: Original strand, 17119444 - 17119487
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||    
T  17119444 taatactttgttatcataaaaaccttataggaattgtacaaacc 17119487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 651
Target Start/End: Original strand, 19905825 - 19905943
Alignment:
Q  533 tgacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaaga-tcttttgtacttcagagtc 631  Q
    ||||||| | |||||||| | ||||||||||||| || || ||||| ||||||||||||||   ||||||||||  |||| |||| ||| |||||||  |    
T  19905825 tgacaaactatactatcatagtttgatagagacagctgcacaagagaacaaatctgatgtgacttctgggtccc-aaagagtcttatgttcttcagatcc 19905923  T
Q  632 tggtgatccttagagtctga 651  Q
    |||||||| | |||||||||    
T  19905924 tggtgatcttcagagtctga 19905943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 836 - 875
Target Start/End: Original strand, 46349443 - 46349482
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaa 875  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  46349443 aatactttgttatcatcaaaatcttagaagaattgtacaa 46349482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 831
Target Start/End: Original strand, 4253249 - 4253294
Alignment:
Q  786 cttgttaaattttaatctatggtcctgcaaaattgaacatatatta 831  Q
    ||||||||||||||||||| ||||||||| | ||||||| ||||||    
T  4253249 cttgttaaattttaatctacggtcctgcacacttgaacacatatta 4253294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 6e-61; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 534 - 831
Target Start/End: Original strand, 11545306 - 11545605
Alignment:
Q  534 gacaaattctactatcagact-ttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtct 632  Q
    |||||||| || ||||||| | |||||||||||||| ||||||||||| ||||||||||||   ||||||||||||  | |||| | | |||||||||||    
T  11545306 gacaaattgtattatcagagtcttgatagagacaacaacataagaggataaatctgatgtgaattctgggtccctctgggtcttctattcttcagagtct 11545405  T
Q  633 ggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatatttttt 732  Q
    | || || ||||||||||||| |||||||||  ||||||||  | | |||||||| ||||||||| ||||||||||| || ||||||||| | || || |    
T  11545406 gatggtctttagagtctgatgtagatcttcaggttctgattgactttctttcttctgatccaaggtgttgacttctgattaacctttcttgagatcttct 11545505  T
Q  733 accacagtct-tgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatatta 831  Q
    |||| ||||| | |||||||||| | |||||||||||||| |||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||    
T  11545506 accatagtctattagcttctcttatacttttgatgctcttttacatgttcagaccttattaaattttaatatatggtcctgcacacttgaacatatatta 11545605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 534 - 836
Target Start/End: Complemental strand, 17474112 - 17473792
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtact---------- 623  Q
    |||||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||| |||||||| || ||||||              
T  17474112 gacaaactgtactatcagactttgatagagacaactacagaagatgacaaatctgatgtggtgtccgagtctctcaagattttctgtactctagagtcag 17474013  T
Q  624 -------tcagagtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacc 716  Q
           | ||||||||||  || | ||||||||||| |||||||||  |||||| |||||||||| ||||  |||||||| |||||||| |||||||||    
T  17474012 gaggtctttagagtctggtagtcttcagagtctgatgtagatcttcaatttctgagtagcatccttacttcttatccaaggtgttgacttttggttgacc 17473913  T
Q  717 tttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaa 815  Q
    |||||||| || || ||||| |||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||||||     
T  17473912 tttcttcaaatcttctaccatagtctttgagtttctcttgtgcttctgatactcttatacatgttcagaccttgttaaattttaatttatgttcctgcac 17473813  T
Q  816 aattgaacatatattagcata 836  Q
    | |||||||||||||| ||||    
T  17473812 acttgaacatatattaacata 17473792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 626 - 808
Target Start/End: Complemental strand, 21822028 - 21821845
Alignment:
Q  626 agagtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcat 725  Q
    |||||||| || || | ||||||| ||||||||| ||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  21822028 agagtctgatggtcttcagagtctaatgaagatcatcagcttctgagtagcatcctttcttctgatccaagtcgttgacttctggttgacctttcttcat 21821929  T
Q  726 attttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggt 808  Q
    ||||| ||||| |||||| ||||||||||| |||||   || |||||||||||||||||||||| ||||||||| || ||||||    
T  21821928 attttctaccatagtcttcgagcttctcttatgcttcaaattctcttatacatgttcagaccttattaaattttgatttatggt 21821845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 546 - 836
Target Start/End: Original strand, 11419819 - 11420128
Alignment:
Q  546 tatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtactt-cagagtctggtgatccttag 644  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||  ||| ||||||||||||||||||||| ||||||| || |||| || | || ||||    
T  11419819 tatcagactttgatagaaacaactacagaagaggacaaatctgacatggagtctgggtccctcaagatcttctgtactttcaaagtccggaggtctttag 11419918  T
Q  645 agt-----------------ctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatat 727  Q
    |||                 |||||| ||||||| | ||||| |  | |||||||||||| ||||  |||| ||||||||||||||||||||||||| ||    
T  11419919 agtttgatggtctccagagtctgatgtagatcttaagcttctcagaaacatcctttcttctgatctgaggcattgacttctggttgacctttcttcagat 11420018  T
Q  728 tttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacata 826  Q
     || ||||| |||||| ||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||  | | |||||||||    
T  11420019 cttctaccatagtctttgagcttctcttctacttctgatgttcttatacatgttcagaccttgttaaattttaatatatggtcctttacacttgaacata 11420118  T
Q  827 tattagcata 836  Q
    ||||| ||||    
T  11420119 tattatcata 11420128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 534 - 836
Target Start/End: Complemental strand, 21809989 - 21809671
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 633  Q
    |||| ||| |||||||||||||||||  ||||||||||| |||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||    
T  21809989 gacagattgtactatcagactttgattaagacaactacagaagaggacaaatcttacgtggtgtctggatccctcaagatcttatgtacttcagagtctg 21809890  T
Q  634 gtgatccttagagtctgatg-----------------aagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacc 716  Q
    | | || ||| |||||||||                 |||||||||| |||||   |||||| |||||||| ||||||| |||||||| || || |||||    
T  21809889 gaggtcattaaagtctgatggtctatagagtgtgatgaagatcttcagcttctatgtagcattctttcttctgatccaatgcgttgacgtccggatgacc 21809790  T
Q  717 tttcttcatattttttaccacagtc-ttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaa 815  Q
    |||||||| ||||| ||||| |||| |||||||||| ||||||||  ||||||||  ||||||||||||||||||||| |||||||  || ||| | ||     
T  21809789 tttcttcagattttctaccatagtctttgagcttcttttgtgcttcagatgctct--tacatgttcagaccttgttaagttttaattaattgtcttacac 21809692  T
Q  816 aattgaacatatattagcata 836  Q
    | || ||||||||||||||||    
T  21809691 acttaaacatatattagcata 21809671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 641 - 831
Target Start/End: Complemental strand, 11449340 - 11449149
Alignment:
Q  641 ttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagt 740  Q
    ||||||||| ||| |||||||||  ||||||||  | | |||||||| |||| |||| ||||||||||| || ||||||||| | || || ||||| |||    
T  11449340 ttagagtctaatgtagatcttcaggttctgattgactttctttcttctgatctaaggtgttgacttctgattaacctttcttgagatcttctaccatagt 11449241  T
Q  741 ct-tgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatatta 831  Q
    || | |||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||    
T  11449240 ctattagcttctcttatgcttttgatgctcttttacatgttcagaccttattaaattttaatatatggtcctgcacacttgaacatatatta 11449149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 626 - 836
Target Start/End: Original strand, 47575828 - 47576040
Alignment:
Q  626 agagtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcat 725  Q
    |||||||| || || | ||||||||||| |||||| || ||||||| |||| |  ||||||| |||||||| ||||| |||||||||||||||||||||     
T  47575828 agagtctgatgctcttcagagtctgatgcagatctccaacttctgagtagctttgtttcttctgatccaagacgttgtcttctggttgacctttcttcag 47575927  T
Q  726 attttttaccacagtcttg-agcttctctt-gtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaac 823  Q
    || || |||||  |||||  || ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||  ||||  | | ||||||    
T  47575928 atcttctaccatggtcttttagtttctctttgtgcttttgatgctcttatacatgttcagactttgttaaattttaatttataatcctatacacttgaac 47576027  T
Q  824 atatattagcata 836  Q
    |||||||||||||    
T  47576028 atatattagcata 47576040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 622 - 836
Target Start/End: Original strand, 19053402 - 19053617
Alignment:
Q  622 cttcagagtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttct 721  Q
    ||||||| |||| || || | ||||||||||| ||||||||| ||||||| | || |||||||||  ||||||||   ||| ||| ||||| || |||||    
T  19053402 cttcagattctgatgctcttcagagtctgatgcagatcttcagcttctgagtggcttcctttcttatgatccaagatattg-cttatggttaacttttct 19053500  T
Q  722 tcatattttttaccacagtcttg-agcttctctt-gtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaatt 819  Q
    | | || || ||| | ||||||  |||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||| |||||||| ||| | ||    
T  19053501 ttagatcttctacaatagtcttttagcttctctttgtgcttctgatgctcttatatattttcagaccttgttaaattttaatttatggtccagcacactt 19053600  T
Q  820 gaacatatattagcata 836  Q
    |||||||||||||||||    
T  19053601 gaacatatattagcata 19053617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 534 - 630
Target Start/End: Original strand, 14475357 - 14475452
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagt 630  Q
    |||||| | ||||||| |||||||||||||||||||||| ||||||| ||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  14475357 gacaaactgtactatc-gactttgatagagacaactacaaaagaggaaaaatctgacttggtgtctgggtccctcaagttcttttgtacttcagagt 14475452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 693 - 836
Target Start/End: Complemental strand, 20896966 - 20896824
Alignment:
Q  693 caaggcgttgacttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgttcagaccttgtt 791  Q
    ||||| |||||||||||||| | ||||||| | || || ||||| |||||| |||||||| |||||| || |||||||||||||||||| ||||||||||    
T  20896966 caaggtgttgacttctggttaaactttctttagatcttctaccatagtctttgagcttctattgtgcattcgatgctcttatacatgttaagaccttgtt 20896867  T
Q  792 aaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||| |||||| ||||||| |||| | |  ||||||||||||||||    
T  20896866 aaaatttaatatatggtcatgcatact--aacatatattagcata 20896824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 538 - 632
Target Start/End: Original strand, 14475570 - 14475664
Alignment:
Q  538 aattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtct 632  Q
    |||| |||||||||||||||||| ||| | ||||| |||| |||||||| |||||||| |||||||| |||||||||||||||||||| ||||||    
T  14475570 aattgtactatcagactttgataaagatagctacaaaagaagacaaatcggatgtggtatctgggtctctcaagatcttttgtacttctgagtct 14475664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 753 - 832
Target Start/End: Original strand, 12380494 - 12380573
Alignment:
Q  753 ttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattag 832  Q
    |||||| | ||||||||||||||||| ||||| |||||||||||||||| ||||||| |||| | || ||||||||||||    
T  12380494 ttgtgcatctgatgctcttatacatgctcagaacttgttaaattttaatatatggtcatgcacacttaaacatatattag 12380573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 835 - 878
Target Start/End: Complemental strand, 20896810 - 20896767
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    
T  20896810 taatactttattatcatcaaaatcttagaggaattgtacaaacc 20896767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 703 - 836
Target Start/End: Original strand, 15736938 - 15737070
Alignment:
Q  703 acttctggttgacctttcttcatattttttaccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatc 802  Q
    |||| ||||||||||||||||| || || ||||| ||| || || |||||||| ||||  |||||| ||||| ||||||| | |||  || |||||||||    
T  15736938 acttatggttgacctttcttcaaatcttctacca-agtattcagattctcttgcgcttcagatgcttttatatatgttcataacttagtatattttaatc 15737036  T
Q  803 tatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||  |||| | ||||||| |||||| ||||    
T  15737037 tatggtattgcacacttgaacacatattaacata 15737070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 841 - 878
Target Start/End: Complemental strand, 21809651 - 21809614
Alignment:
Q  841 tttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  21809651 tttgttatcatcaaaatcttataggaattgtacaaacc 21809614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 8677330 - 8677266
Alignment:
Q  772 atacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||| ||||||||||||||||| | || || |||| | |||||||||||||| ||||    
T  8677330 atacatgttcagtccttgttaaattttaatatgtgatcttgcacacttgaacatatattaacata 8677266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 699 - 766
Target Start/End: Complemental strand, 22222516 - 22222448
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtct-tgagcttctcttgtgcttttgatg 766  Q
    |||||||||||||||||||| ||| | || || ||||  ||||| ||||||||||||||||||||||||    
T  22222516 gttgacttctggttgaccttactttagatattctaccgtagtctatgagcttctcttgtgcttttgatg 22222448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 836 - 875
Target Start/End: Complemental strand, 22222364 - 22222325
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaa 875  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  22222364 aatactttgttatcatcaaaaccttagaggaattgtacaa 22222325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 835 - 878
Target Start/End: Original strand, 47576054 - 47576097
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    |||||||||||||||||||||||| || ||||||| ||||||||    
T  47576054 taatactttgttatcatcaaaatcctagaggaattatacaaacc 47576097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 835 - 876
Target Start/End: Original strand, 11420142 - 11420183
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgtacaaa 876  Q
    ||||| |||||||||||||||| |||| ||||||||||||||    
T  11420142 taatattttgttatcatcaaaaccttagaggaattgtacaaa 11420183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 6e-55; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 604 - 836
Target Start/End: Complemental strand, 16586862 - 16586630
Alignment:
Q  604 ccctcaagatcttttgtacttcagagtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttga 703  Q
    |||| |||||||||| ||||||||||||||| | || | |||||||||| |||||||||  ||||||| || ||| ||||||||  ||||||||| ||||    
T  16586862 ccctgaagatcttttatacttcagagtctggaggtcttcagagtctgataaagatcttctgcttctgagtaacatactttcttcttatccaaggctttga 16586763  T
Q  704 cttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatc 802  Q
    |||| || |||||||| |||| || || ||||| ||| || ||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||     
T  16586762 cttccggctgaccttt-ttcagatcttctaccatagtatttgagcttctcttgtgcttctgatgctcttatacattttcaaaccttgttaaattttaatt 16586664  T
Q  803 tatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||||| |||||||||||||||||||    
T  16586663 tatggtcctgcaaatttgaacatatattagcata 16586630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 534 - 771
Target Start/End: Complemental strand, 16587103 - 16586866
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 633  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |  |  |||||| |||||||||| |||||||||||||     
T  16587103 gacaaactatactatcagactttggtagagacaactacataagaggacaaatctgatgtggagagtatgtccctgaagatcttttatacttcagagtcta 16587004  T
Q  634 gtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatatttttta 733  Q
    | | || | |||||||||| || ||||||  ||||||| || ||| ||||||||  ||||||||| |||||||| ||||||||||| |||| || || ||    
T  16587003 gaggtcttcagagtctgataaaaatcttctgcttctgagtaacatactttcttcttatccaaggctttgacttccggttgaccttt-ttcagatcttcta 16586905  T
Q  734 ccacagt-cttgagcttctcttgtgcttttgatgctctt 771  Q
    ||| |||  ||||| ||||||||||||| ||||| ||||    
T  16586904 ccatagtatttgagtttctcttgtgcttctgatgatctt 16586866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 680 - 814
Target Start/End: Complemental strand, 28449351 - 28449216
Alignment:
Q  680 ctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtct-tgagcttctcttgtgcttttgatgctcttatacatg 778  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| || || ||||| ||||| | |||||||||||||||| |||| ||||||||||||    
T  28449351 ctttcttctgatccaaggcgttgacttctagttgacctttcttcagatcttctaccatagtctattagcttctcttgtgcttctgattctcttatacatg 28449252  T
Q  779 ttcagaccttgttaaattttaatctatggtcctgca 814  Q
    |||| |||||| ||||||||| |||||| |||||||    
T  28449251 ttcataccttgctaaattttattctatgatcctgca 28449216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 574 - 836
Target Start/End: Complemental strand, 27765617 - 27765351
Alignment:
Q  574 aagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctggtgatccttagagtctgatgaagatcttcatcttct-gat 672  Q
    |||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||| || ||  | | ||||||||||||||||||| || |  | |||    
T  27765617 aagaagacaaatctgacgtggtgtctgggtcccttaagatcttatgtacttcagagtttgatggacttcagagtctgatgaagatctt-atgtagttgat 27765519  T
Q  673 tagcatccttt---cttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgct 768  Q
     |  ||  |||   |||| |||| |||  ||||||||||||||||| |||||||| || || ||||| |||||| ||| ||||||||||||| ||||  |    
T  27765518 aaatatatttttttcttctgatcgaagatgttgacttctggttgacatttcttcagatcttctaccatagtctttgagattctcttgtgcttctgatatt 27765419  T
Q  769 cttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||| | ||||| ||||||||||| |||| |||||||||||||| | |||||||||||||| ||||    
T  27765418 cttataaacgttcaaaccttgttaaaatttattctatggtcctgcacatttgaacatatattaacata 27765351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 681 - 836
Target Start/End: Original strand, 18848605 - 18848761
Alignment:
Q  681 tttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtct-tgagcttctcttgtgcttttgatgctcttatacatgt 779  Q
    ||||||| |||||||||||||||||||||||||||||||||||| || || ||||| ||| | | |||||||||||||||||||||| | ||||| ||||    
T  18848605 tttcttctgatccaaggcgttgacttctggttgacctttcttcagatcttctaccatagtttctcagcttctcttgtgcttttgatgttgttatagatgt 18848704  T
Q  780 tcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    | | | |||||||||||||||| |||||| ||| | | |||||||||||||| ||||    
T  18848705 ttaaaacttgttaaattttaatatatggttctgtacacttgaacatatattatcata 18848761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 699 - 836
Target Start/End: Original strand, 23959637 - 23959774
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattt 797  Q
    |||||||||| ||||||||||||||| || || ||||| ||||||  ||||||||| ||||||  || ||||||||||||||||| ||||||||||||||    
T  23959637 gttgacttctagttgacctttcttcagatcttctacca-agtcttccagcttctctagtgcttcagacgctcttatacatgttcataccttgttaaattt 23959735  T
Q  798 taatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||| ||||||||| || | |||||||||||||||||||    
T  23959736 taatatatggtcctccacacttgaacatatattagcata 23959774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 533 - 832
Target Start/End: Complemental strand, 19878067 - 19877770
Alignment:
Q  533 tgacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtct 632  Q
    ||||||||  |||||||||  ||||||||||| ||||||| |||| ||||||||||| ||||  | |||| ||||||   |||| ||| ||| |||||||    
T  19878067 tgacaaatggtactatcagggtttgatagagataactacaaaagaagacaaatctgacgtggcttttgggcccctcagagtcttctgttctttagagtct 19877968  T
Q  633 ggtgatccttagagtctgatgaagatc-ttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttt 731  Q
    | || || |||||||||| |    ||| ||||  || ||| |  | |||||||||| ||||||||| |||||||||   ||||||||||||||||| |||    
T  19877967 gatggtctttagagtctggt----atccttcagattatgaatgacttcctttcttcagatccaaggtgttgacttccaattgacctttcttcatatcttt 19877872  T
Q  732 taccacagtcttg-agcttctcttgtgcttttgat-gctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatat 829  Q
    ||||| ||||||  | ||||||||||||||  ||| || |||||||||||||| |||||||||||||||| || ||||||||| | |||| ||| |||||    
T  19877871 tacca-agtcttctaacttctcttgtgcttcagattgcacttatacatgttcataccttgttaaattttattcgatggtcctgaataatttaacgtatat 19877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 611 - 743
Target Start/End: Complemental strand, 16492389 - 16492257
Alignment:
Q  611 gatcttttgtacttcagagtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctgg 710  Q
    |||||| |||||||||||||||  ||  | | ||||||||||| ||||||||| ||||||| |||| |  ||| ||| |||| |||||||| |||| |||    
T  16492389 gatcttctgtacttcagagtctaatggccttcagagtctgatgcagatcttcaacttctgagtagctttatttattctgatctaaggcgttaacttttgg 16492290  T
Q  711 ttgacctttcttcatattttttaccacagtctt 743  Q
    |||||||||||||| ||||| ||||| ||||||    
T  16492289 ttgacctttcttcagattttataccatagtctt 16492257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 699 - 814
Target Start/End: Original strand, 22268949 - 22269064
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattt 797  Q
    |||||||||||||| ||||||||||| || || ||||  ||||||  |||||||||| | ||| ||||||||| ||| || ||||||||||| |||||||    
T  22268949 gttgacttctggtttacctttcttcagatcttctacct-agtcttttagcttctcttatacttctgatgctctaatatattttcagaccttgataaattt 22269047  T
Q  798 taatctatggtcctgca 814  Q
    |||||||||||||||||    
T  22269048 taatctatggtcctgca 22269064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 759 - 836
Target Start/End: Complemental strand, 17569328 - 17569251
Alignment:
Q  759 ttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||||||||| | || | || ||||||||||||||||    
T  17569328 tttttatgctcttatatatgttcagaccttgataaattttaatctatggtcatacacacttaaacatatattagcata 17569251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 537 - 632
Target Start/End: Complemental strand, 16917412 - 16917316
Alignment:
Q  537 aaattctactatcagact-ttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtct 632  Q
    ||||| |||||||||| | ||||||| ||||||||||||||| || |||||||||||||  ||||| ||||||| | |||| ||| |||||||||||    
T  16917412 aaattgtactatcagagtcttgatagcgacaactacataagaagaaaaatctgatgtggcttctggatccctcaggctcttatgttcttcagagtct 16917316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 657 - 781
Target Start/End: Complemental strand, 21748348 - 21748221
Alignment:
Q  657 atcttcatcttctgattagcatccttt-cttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtc--ttgagcttctct 753  Q
    ||||||| ||||||| | || |||||| |||| ||||||||  |||||||| ||||||||||||||||| || || ||||| ||||  || |||||||||    
T  21748348 atcttcaacttctgagtggcgtccttttcttctgatccaagatgttgacttgtggttgacctttcttcagatcttctaccatagtcttttaagcttctct 21748249  T
Q  754 tgtgcttttgatgctcttatacatgttc 781  Q
    |||| || | ||||||| ||||||||||    
T  21748248 tgtgtttctaatgctctaatacatgttc 21748221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 681 - 782
Target Start/End: Complemental strand, 22311411 - 22311308
Alignment:
Q  681 tttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtc--ttgagcttctcttgtgcttttgatgctcttatacatg 778  Q
    ||||||| |||||||   |||||||||||||||||||||||| | || || ||||| ||||  ||||||||||||| ||||| ||||||||| ||| |||    
T  22311411 tttcttctgatccaatatgttgacttctggttgacctttctttagatcttctaccatagtctattgagcttctcttatgcttctgatgctctaatagatg 22311312  T
Q  779 ttca 782  Q
    ||||    
T  22311311 ttca 22311308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 708 - 782
Target Start/End: Complemental strand, 21548072 - 21547996
Alignment:
Q  708 tggttgacctttcttcatattttttaccacagtctt--gagcttctcttgtgcttttgatgctcttatacatgttca 782  Q
    ||||||||||||||||| || || ||||||||||||  ||||||||||||| ||| ||||||| | |||||||||||    
T  21548072 tggttgacctttcttcagatcttctaccacagtcttttgagcttctcttgtacttctgatgctttaatacatgttca 21547996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 553 - 618
Target Start/End: Original strand, 29409734 - 29409799
Alignment:
Q  553 ctttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatctttt 618  Q
    ||||||| |||||||||| | |||| |||||||||||||||| ||||||||||||||  |||||||    
T  29409734 ctttgatggagacaactatagaagacgacaaatctgatgtggagtctgggtccctcataatctttt 29409799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 836
Target Start/End: Complemental strand, 35666002 - 35665846
Alignment:
Q  681 tttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgat-gctcttatacatg 778  Q
    ||||||| |||||||   ||||||||||||||||| |||||||| || || ||||| ||||||  || || |||| | ||| | || | |||||||||||    
T  35666002 tttcttctgatccaaaatgttgacttctggttgacttttcttcagatcttctacca-agtcttttagtttttcttatacttctaattgttcttatacatg 35665904  T
Q  779 ttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    || ||||||||| ||||||||||||||| || |||| | || ||||||||||| ||||    
T  35665903 tttagaccttgtcaaattttaatctatgatcgtgcatacttaaacatatattaacata 35665846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 751 - 811
Target Start/End: Original strand, 15375921 - 15375981
Alignment:
Q  751 tcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcct 811  Q
    |||||||||| |||| |||||||| |||||||||||||| |||||||||||| || |||||    
T  15375921 tcttgtgcttctgatactcttatatatgttcagaccttgataaattttaatcaatagtcct 15375981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 780
Target Start/End: Original strand, 19564944 - 19565044
Alignment:
Q  681 tttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgt 779  Q
    ||||||| |||||||   ||||||| |||||||| |||||||||  | || ||||| |||||| ||||||||||||||||| ||||||| | ||||||||    
T  19564944 tttcttctgatccaatatgttgactgctggttgaactttcttcaggtcttctaccatagtctttgagcttctcttgtgcttctgatgctttaatacatgt 19565043  T
Q  780 t 780  Q
    |    
T  19565044 t 19565044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 616
Target Start/End: Complemental strand, 20588814 - 20588742
Alignment:
Q  544 actatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatctt 616  Q
    ||||||||||||||||||||||| ||||| ||| |||||||| |||  ||| |||||||||| |||| |||||    
T  20588814 actatcagactttgatagagacagctacagaagtggacaaatatgacatggagtctgggtccatcaatatctt 20588742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 782
Target Start/End: Complemental strand, 24764331 - 24764228
Alignment:
Q  681 tttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtctt--gagcttctcttgtgcttttgatgctcttatacatg 778  Q
    ||||||| ||||||| | |||||||||||||||| |||| || | || |||||||| | ||||  ||||||||| ||||||| ||||||| | |||||||    
T  24764331 tttcttctgatccaatgtgttgacttctggttgatctttttttagatattttaccatattcttttgagcttctcgtgtgcttatgatgctttaatacatg 24764232  T
Q  779 ttca 782  Q
    ||||    
T  24764231 ttca 24764228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 835 - 875
Target Start/End: Complemental strand, 27765337 - 27765297
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgtacaa 875  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  27765337 taatactttgttatcatcaaaatcttagaggaattgtacaa 27765297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 534
Target Start/End: Complemental strand, 16587200 - 16587146
Alignment:
Q  480 attagacattcaaaattccttttctgaaactagaattattctttcattctctttg 534  Q
    ||||||||||  |||||||||| |  |||||||||||||||||||||||||||||    
T  16587200 attagacatttgaaattcctttgcataaactagaattattctttcattctctttg 16587146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 783 - 836
Target Start/End: Original strand, 13074082 - 13074135
Alignment:
Q  783 gaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||||||||||||||||||||  |||| | || ||||||||||||||||    
T  13074082 gaccttgttaaattttaatctatggttatgcacatttaaacatatattagcata 13074135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 835 - 872
Target Start/End: Complemental strand, 16586616 - 16586579
Alignment:
Q  835 taatactttgttatcatcaaaatcttaaaggaattgta 872  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  16586616 taatactttgttatcatcaaaatcttagaggaattgta 16586579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 836 - 876
Target Start/End: Complemental strand, 17417117 - 17417077
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaaa 876  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  17417117 aatactttgttatcatcaaaactttaaaggaattgtacaaa 17417077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 699 - 782
Target Start/End: Original strand, 18922628 - 18922712
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgttca 782  Q
    ||||| |||||||||||||||||||| ||  | |||||  ||||| ||| |||||||||||||||||| || | |||||||||||    
T  18922628 gttgatttctggttgacctttcttcagatcatctaccaacgtctttgagtttctcttgtgcttttgatactttaatacatgttca 18922712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 793
Target Start/End: Original strand, 13073916 - 13074010
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaa 793  Q
    ||||||||||| ||  |||||||||| || || ||||| ||||||  | |||||||||||||| | ||||||||||| ||||||| ||||||||||    
T  13073916 gttgacttctgatttccctttcttcagatcttctacca-agtcttttaacttctcttgtgcttctaatgctcttatatatgttcataccttgttaa 13074010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 836 - 875
Target Start/End: Complemental strand, 22311239 - 22311200
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaa 875  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  22311239 aatactttgttatcatcaaaaccttagaggaattgtacaa 22311200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 681 - 782
Target Start/End: Complemental strand, 17417287 - 17417185
Alignment:
Q  681 tttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtc-ttgagcttctcttgtgcttttgatgctcttatacatgt 779  Q
    ||||||| |||| || | ||||||||||| ||||| |||||||| || || |||||  ||| |||||||| |||||||||| ||||||| | |||| |||    
T  17417287 tttcttctgatctaatgtgttgacttctgattgacatttcttcagatcttctaccaatgtctttgagcttttcttgtgcttctgatgctttcatacttgt 17417188  T
Q  780 tca 782  Q
    |||    
T  17417187 tca 17417185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 708 - 801
Target Start/End: Complemental strand, 20588613 - 20588519
Alignment:
Q  708 tggttgacctttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaat 801  Q
    ||||||||||||||| | || || ||||| |||||| ||||||||||| ||| | ||||||||| || ||||| || || |||||||| ||||||    
T  20588613 tggttgacctttcttaagatcttctaccatagtctttgagcttctcttttgcatctgatgctctcatgcatgtacaaactttgttaaaatttaat 20588519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 836 - 878
Target Start/End: Complemental strand, 21547927 - 21547885
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  21547927 aatactttggtatcatcaaaaccttagaggaattgtacaaacc 21547885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 836 - 878
Target Start/End: Original strand, 21585066 - 21585108
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    |||||||||||||| |||||| |||| ||||||||||||||||    
T  21585066 aatactttgttatcctcaaaaccttagaggaattgtacaaacc 21585108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 5e-43; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 541 - 832
Target Start/End: Original strand, 4312480 - 4312789
Alignment:
Q  541 tctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttc--------------- 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||                   
T  4312480 tctactatcagactttgatagagacaactacataagaggacaaatctgacgtggagtctgggtccctcaagatcttatgtacttctgagtttgaagattt 4312579  T
Q  626 --agagtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttc 723  Q
       ||||||| || || | |||||||||||| ||| |||| |||  || || || |  |||||| ||||||||| |||||||| || |||||||||||||    
T  4312580 ttcgagtctgatgttcttcagagtctgatgaggattttcagctttagagtaacaactattcttctgatccaaggtgttgacttttgattgacctttcttc 4312679  T
Q  724 atattttttaccacagtc-ttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaa 822  Q
    | || || ||||| |||| || |||||||  |||  |||| ||||||||||||||||||| | |||||||||||||||| ||||||| |||| | |||||    
T  4312680 agatcttctaccatagtctttcagcttcttgtgtattttttatgctcttatacatgttcaaaacttgttaaattttaatatatggtcatgcacacttgaa 4312779  T
Q  823 catatattag 832  Q
    ||| ||||||    
T  4312780 catgtattag 4312789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 677 - 836
Target Start/End: Complemental strand, 22562580 - 22562419
Alignment:
Q  677 atcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgctctt-ata 774  Q
    ||||||| ||| ||||||||  ||||||||| | |||||| ||||||| || || ||||| |||||| |||||||||||||| || |||||||||| |||    
T  22562580 atcctttattctgatccaagaagttgacttcggtttgaccattcttcagatcttctaccatagtctttgagcttctcttgtgtttatgatgctctttata 22562481  T
Q  775 catgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||||| |||||||||||||||| |||||||| | ||||||||||||| |||||    
T  22562480 catgttcagacctttttaaattttaatctatagtcctgcacacttgaacatatattcgcata 22562419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 657 - 836
Target Start/End: Complemental strand, 10814633 - 10814451
Alignment:
Q  657 atcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttg 755  Q
    ||||||| |||||||  | |||| ||||||| ||||||||| ||| | ||||||||||||||  ||||  | || ||||| |||||| |||||||||||     
T  10814633 atcttcagcttctgagcatcatcttttcttctgatccaaggtgttaatttctggttgaccttcattcaattcttctaccatagtctttgagcttctcttt 10814534  T
Q  756 tgcttttgatgctcttatacatgttcagaccttgttaaattttaatc--tatggtcctgcaaaattgaacatatattagcata 836  Q
    | |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| || | || ||| ||||||||||||    
T  10814533 tacttttgatgctcttatacatgttcagaccttgttaaattttaatctatatggtcctacacacttaaacgtatattagcata 10814451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 747 - 836
Target Start/End: Complemental strand, 6560646 - 6560557
Alignment:
Q  747 cttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||| |||| |||||| ||||||| || ||||||||||| ||||    
T  6560646 cttctcttgtgcttttgatgctcttatatatgttcagaccttgataaattgtaatttatggttctgcaaacttaaacatatattaccata 6560557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 534 - 653
Target Start/End: Complemental strand, 10814792 - 10814673
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagtctg 633  Q
    |||||||| ||||||||||||||||||| |||||||||| || | |||||||||||||| | ||| ||  ||||||||||||| |||||||| |||||||    
T  10814792 gacaaattatactatcagactttgatagtgacaactacagaatatgacaaatctgatgtagagtccggtcccctcaagatcttctgtacttctgagtctg 10814693  T
Q  634 gtgatccttagagtctgatg 653  Q
    ||| || |  ||||||||||    
T  10814692 gtggtcttccgagtctgatg 10814673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 699 - 836
Target Start/End: Original strand, 17291786 - 17291924
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtcttg--agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaatt 796  Q
    |||||||||| ||||||||||||||| || || ||||| ||||||   |||||||||| |||||||| |||| | ||| |||||||||| ||||||||||    
T  17291786 gttgacttctagttgacctttcttcaaatcttctacca-agtctttttagcttctcttatgcttttgttgctatcatatatgttcagactttgttaaatt 17291884  T
Q  797 ttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||| || | || | || ||||||||||||||||    
T  17291885 ttaatctatgatcttacacacttaaacatatattagcata 17291924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 706 - 836
Target Start/End: Original strand, 29032275 - 29032405
Alignment:
Q  706 tctggttgacctttcttcatattttttaccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctat 805  Q
    |||| ||| |||||||||| ||||| |||||   | || |||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||     
T  29032275 tctgattggcctttcttcaaattttctaccaagttttttagcttcacttgtgcttctgatgctcttatacatgttcaggccttgttcaattttaatctaa 29032374  T
Q  806 ggtcctgcaaaattgaacatatattagcata 836  Q
    | |||||||   | ||| |||||||||||||    
T  29032375 gatcctgcactctagaatatatattagcata 29032405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 689 - 836
Target Start/End: Complemental strand, 17146383 - 17146236
Alignment:
Q  689 gatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttcagacct 787  Q
    ||||||| | ||||||||||   |||||||||||||||| || ||||  ||| ||  |||||||||||||||| |||| |||||||  ||||||| ||||    
T  17146383 gatccaaagtgttgacttctatctgacctttcttcatatcttctaccg-agtattttagcttctcttgtgcttctgatactcttatctatgttcaaacct 17146285  T
Q  788 tgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||||||||||| |||| ||||||| | || || |||||||||||||    
T  17146284 tgttaaattttaatatatgatcctgcacacttaaatatatattagcata 17146236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 757 - 836
Target Start/End: Original strand, 21747375 - 21747454
Alignment:
Q  757 gcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||| |||||||||| ||||| ||||||||||||||||||||| | ||||||||||||   |||| ||||||||||||||    
T  21747375 gcttctgatgctcttttacattttcagaccttgttaaattttagtatatggtcctgcatccttgatcatatattagcata 21747454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 616
Target Start/End: Complemental strand, 22562743 - 22562670
Alignment:
Q  543 tactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatctt 616  Q
    |||||||||||||| ||||||||||||||| ||||||| |||||||| ||||  | ||||||||| ||||||||    
T  22562743 tactatcagacttttatagagacaactacagaagaggaaaaatctgacgtggattatgggtcccttaagatctt 22562670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 764 - 835
Target Start/End: Complemental strand, 11703872 - 11703801
Alignment:
Q  764 atgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcat 835  Q
    ||||||||||||||||||| |  |||||||||||||||||||| || |||| | || |||||||||||||||    
T  11703872 atgctcttatacatgttcaaatattgttaaattttaatctatgatcatgcacacttaaacatatattagcat 11703801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 745 - 836
Target Start/End: Original strand, 26238925 - 26239016
Alignment:
Q  745 agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||| |||||||| ||||||| ||||| ||||| |||||||  ||||||||||| ||||||| ||||   || || |||||||||||||    
T  26238925 agcttcttttgtgcttctgatgcttttatatatgtttagaccttaataaattttaatttatggtcatgcatgcttaaaaatatattagcata 26239016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 836 - 874
Target Start/End: Original strand, 14272294 - 14272332
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtaca 874  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  14272294 aatactttgttatcatcaaaatcttagaggaattgtaca 14272332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 836 - 878
Target Start/End: Original strand, 10821517 - 10821559
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    ||||||||||||||||||||| |||| || |||||||||||||    
T  10821517 aatactttgttatcatcaaaaccttatagtaattgtacaaacc 10821559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 599 - 836
Target Start/End: Complemental strand, 24838265 - 24838028
Alignment:
Q  599 tgggtccctcaagatcttttgtacttcagagtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggc 698  Q
    ||||||||||| |||||| ||||||| |||||||| || |  | | |||| ||||| |||||||| ||| ||| ||||||| |||||||  | | ||||     
T  24838265 tgggtccctcatgatcttctgtactttagagtctgatggtattcaaagtccgatgaggatcttcaacttttgagtagcatcatttcttcttaac-aagga 24838167  T
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattt 797  Q
    ||||||||||| ||||||||||||||||| || ||||| |||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  24838166 gttgacttctgcttgacctttcttcatatcttctaccatagtctttgagcttctctcatgtttttgatgctcttatacatgttcagaccttgttaaattt 24838067  T
Q  798 taatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||  | || |||| | |||| ||||||||| ||||    
T  24838066 taatcttcgatcatgcacacttgatcatatattaacata 24838028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 665 - 809
Target Start/End: Original strand, 26014000 - 26014145
Alignment:
Q  665 cttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtctt-gagcttctcttgtgcttttg 763  Q
    ||||||| ||||||||||||||| |||| |||| |||||||| |||||||| |||||||| ||  | || || |||||| ||| ||||||| ||| | ||    
T  26014000 cttctgagtagcatcctttcttctgatctaaggtgttgacttttggttgacatttcttcagatcatctatcatagtctttgagattctcttatgcatatg 26014099  T
Q  764 atgctcttatacatgttcagaccttgttaaattttaatctatggtc 809  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||    
T  26014100 atgctcttatacatgttcataccttgttatatttaaatctatggtc 26014145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 534 - 630
Target Start/End: Original strand, 26013819 - 26013915
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtacttcagagt 630  Q
    |||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||| |||| ||||  ||||||| ||||||| ||||||| |||||    
T  26013819 gacaaattgtactatcagattttgatagagacaactacagaagatgacaaatctgacgtggagtctaagtccctctagatcttctgtactttagagt 26013915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 534 - 832
Target Start/End: Complemental strand, 26335569 - 26335270
Alignment:
Q  534 gacaaattctactatcagactttgatagagacaactacataagaggacaaatctga-tgtggtgtctgggtccctcaagatcttttgtacttcagagtct 632  Q
    |||||||| |||||||||| | ||||||||| | || || ||||  |||||||||| ||| |  ||| ||||||||||  |||| ||| ||||||||| |    
T  26335569 gacaaattgtactatcagagtctgatagagatagcttcagaagaacacaaatctgactgttgcttctaggtccctcaaagtcttatgtccttcagagtat 26335470  T
Q  633 ggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatatttttt 732  Q
    | || || | |||||||| || ||||||||| ||||||| || | |||||||||| | ||  | | ||||||   || |||| ||||||| | || |  |    
T  26335469 gatggtcttcagagtctggtgcagatcttcagcttctgagtaacttcctttcttctggtctgaagtgttgacccatgattgaactttcttaaaatctcct 26335370  T
Q  733 accacagtcttg-agcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatatta 831  Q
    |||| | ||||  |||||||||| ||||| |||||||| |||||||||| ||| |||||| ||||| ||||||||||||| || | ||||||||||||||    
T  26335369 acca-attcttctagcttctcttatgcttctgatgctcatatacatgttaagatcttgttgaatttcaatctatggtccttcatatttgaacatatatta 26335271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 543 - 624
Target Start/End: Original strand, 22826244 - 22826325
Alignment:
Q  543 tactatcagactttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatcttttgtactt 624  Q
    |||||||||||||||||||||| ||||||| || |||||||||  || |||| ||||||||||||||||||||| |||||||    
T  22826244 tactatcagactttgatagagaaaactacaaaataggacaaattagacgtggagtctgggtccctcaagatcttctgtactt 22826325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 667 - 782
Target Start/End: Complemental strand, 30608098 - 30607981
Alignment:
Q  667 tctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttcatattttttaccacagtc--ttgagcttctcttgtgcttttga 764  Q
    |||||| |||||||||||||| ||||| ||  ||||||||||||||||||||||||||||| || ||| | ||||  || ||||||||| |||||| | |    
T  30608098 tctgatgagcatcctttcttctgatcctagatgttgacttctggttgacctttcttcatatcttctactatagtcttttaagcttctctagtgcttctca 30607999  T
Q  765 tgctcttatacatgttca 782  Q
    |||| | |||||||||||    
T  30607998 tgctataatacatgttca 30607981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 762 - 836
Target Start/End: Original strand, 27500101 - 27500175
Alignment:
Q  762 tgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||||||||| |||||| ||||||||||||| | |||||||||||||| | || |||||| |||||||||    
T  27500101 tgatgctcttatacacgttcaggccttgttaaatttcattctatggtcctgcatactttaacatacattagcata 27500175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 738 - 836
Target Start/End: Complemental strand, 17337852 - 17337753
Alignment:
Q  738 agtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaa-ttttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    |||||| ||||||| |||| ||||  ||||||||||| |||||||| ||||| |||| ||||||| ||||||| |||| | || ||||||||||||||||    
T  17337852 agtctttagcttcttttgtactttaaatgctcttatatatgttcagcccttgataaatttttaatttatggtcttgcacacttaaacatatattagcata 17337753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 699 - 805
Target Start/End: Original strand, 20690348 - 20690452
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaatttt 798  Q
    |||||||| || |||||||||||||| || |||||  | |||||| |||||||||| ||||| | ||||||||||| ||||||||| | || ||||||||    
T  20690348 gttgacttatgattgacctttcttcaaatcttttataa-agtctttagcttctcttatgcttctaatgctcttatatatgttcagaac-tgataaatttt 20690445  T
Q  799 aatctat 805  Q
    |||||||    
T  20690446 aatctat 20690452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 555 - 616
Target Start/End: Complemental strand, 30608239 - 30608178
Alignment:
Q  555 ttgatagagacaactacataagaggacaaatctgatgtggtgtctgggtccctcaagatctt 616  Q
    |||||||||| ||||||||| || |||||| |||| |||| |||||||||||||||||||||    
T  30608239 ttgatagagataactacatatgatgacaaaactgacgtggagtctgggtccctcaagatctt 30608178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 836 - 878
Target Start/End: Complemental strand, 24492107 - 24492065
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    ||||||||||||||||||||| |||| ||||||||||||||||    
T  24492107 aatactttgttatcatcaaaaccttagaggaattgtacaaacc 24492065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 589
Target Start/End: Original strand, 27499899 - 27499955
Alignment:
Q  533 tgacaaattctactatcagactttgatagagacaactacataagaggacaaatctga 589  Q
    ||||||||| ||||||| || ||||||||||||||||| | |||| |||||||||||    
T  27499899 tgacaaattgtactatctgaatttgatagagacaactataaaagatgacaaatctga 27499955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 724
Target Start/End: Original strand, 27499994 - 27500073
Alignment:
Q  645 agtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttcttca 724  Q
    ||||||||| ||||||||| ||||||| |    |||||||||| ||||||||| |||| ||||||||||| |||| ||||    
T  27499994 agtctgatggagatcttcaacttctgaatgatttcctttcttctgatccaaggtgttggcttctggttgatcttttttca 27500073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 394 - 428
Target Start/End: Complemental strand, 27736660 - 27736626
Alignment:
Q  394 gattcaaataatcttgaatcgtatcactctgaatc 428  Q
    |||||||||| ||||||||||||||||||||||||    
T  27736660 gattcaaatagtcttgaatcgtatcactctgaatc 27736626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 622 - 771
Target Start/End: Original strand, 6123 - 6272
Alignment:
Q  622 cttcagagtctggtgatccttagagtctgatgaagatcttcatcttctgattagcatcctttcttccgatccaaggcgttgacttctggttgacctttct 721  Q
    |||| ||||||| ||||| | ||| ||||||||   |||||| ||||||| || |||||||||||| |||| |||| ||||||||||||||||||||||     
T  6123 cttctgagtctgatgatcttcagattctgatgagagtcttcaacttctgagtaacatcctttcttcagatc-aaggtgttgacttctggttgacctttca 6221  T
Q  722 tcatattttttaccacagtc-ttgagcttctcttgtgcttttgatgctctt 771  Q
    ||| || || ||||| |||| ||||||||||||||||||| ||||||||||    
T  6222 tcagatcttctaccatagtctttgagcttctcttgtgcttctgatgctctt 6272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 836
Target Start/End: Complemental strand, 319240 - 319104
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtcttgagcttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaatttt 798  Q
    |||||||||||||||||||||||||| || || ||||| |||||| ||||||| || |||||  |||||||| ||| ||| ||||| |||   |||||||    
T  319240 gttgacttctggttgacctttcttcagatgttctacca-agtctttagcttcttttatgcttcagatgctctcatatatggtcagaacttagcaaatttt 319142  T
Q  799 aatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||| |||| ||||||| | ||||||| |||||| ||||    
T  319141 aatttatgatcctgcacacttgaacacatattaacata 319104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 747 - 836
Target Start/End: Complemental strand, 187 - 98
Alignment:
Q  747 cttctcttgtgcttttgatgctcttatacatgttcagaccttgttaaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||| |||||| || |||| |||||||| || ||||||||||||||||||||||| | |||||||   |||||||||||||| ||||    
T  187 cttctctggtgcttctggtgcttttatacatatttagaccttgttaaattttaatctaagatcctgcactcttgaacatatattaacata 98  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0754 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 837 - 875
Target Start/End: Original strand, 4950 - 4988
Alignment:
Q  837 atactttgttatcatcaaaatcttaaaggaattgtacaa 875  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  4950 atactttgttatcatcaaaaccttagaggaattgtacaa 4988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 836 - 878
Target Start/End: Original strand, 28340 - 28382
Alignment:
Q  836 aatactttgttatcatcaaaatcttaaaggaattgtacaaacc 878  Q
    |||| |||||||||||||||| |||| ||||||||||||||||    
T  28340 aatattttgttatcatcaaaaccttagaggaattgtacaaacc 28382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 699 - 782
Target Start/End: Complemental strand, 105438 - 105353
Alignment:
Q  699 gttgacttctggttgacctttcttcatattttttaccacagtc--ttgagcttctcttgtgcttttgatgctcttatacatgttca 782  Q
    |||||||  ||||||||||||||||| || || ||||| ||||  |||||||||||||||| || |||| || | |||||||||||    
T  105438 gttgactcatggttgacctttcttcagatcttctaccatagtcgtttgagcttctcttgtgtttctgatcctttaatacatgttca 105353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 836
Target Start/End: Original strand, 4626 - 4671
Alignment:
Q  791 taaattttaatctatggtcctgcaaaattgaacatatattagcata 836  Q
    ||||||||| |||||||||||||| | ||||||| |||||||||||    
T  4626 taaattttagtctatggtcctgcacacttgaacaaatattagcata 4671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University