View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4574-Insertion-3 (Length: 751)
Name: NF4574-Insertion-3
Description: NF4574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4574-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 27756376 - 27756001
Alignment:
| Q |
8 |
tagaaaactatcaaactcaacaaacaaggtgtttctatatctaagtaaacatgattattctatttcagtaaacatagtactaacacaactaatttctaat |
107 |
Q |
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| T |
27756376 |
tagaaaactatcaaactcaacaaacaaggtgtttctacatctaagtaaatgtgattattctatttcagtaaacata---ctaacacaactaatttctaag |
27756280 |
T |
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| Q |
108 |
agttcattgtgtagacatacttacacagaagcaacattccgtgcttgccgagaaactagtgaatttgctaaaacaaatgctccaactccaagatccatct |
207 |
Q |
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| T |
27756279 |
agttcattgtgtagacatacttacacagaagcaacattccgtgcttgccgagaaactagtgaatttgctaaaacaaatgctccaactccaagatccatct |
27756180 |
T |
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| Q |
208 |
gcaaggcagaatttatttctaatctcaacagaacaatcaaagtattgactatacatcttgttagcaacataaattaatgcaccaaatagcatgtacagac |
307 |
Q |
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| T |
27756179 |
gcaaggcagaagtaatttctaatctcaacagaacaatcaaagtattgactatacatcttgttagcaacataaattaatgcatcaaatagtatgtacagac |
27756080 |
T |
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| Q |
308 |
tagaatccatgaatcagttggagagaaacagagatcaaaattgcaacttcatataatcaacaaatagaagtaatttaca |
386 |
Q |
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| T |
27756079 |
tagagtccataaaacagttggagagaaacagagatcaaaattgtaacttcatataatcaacaaatagaagtaatttaca |
27756001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 466 - 751
Target Start/End: Complemental strand, 27755978 - 27755695
Alignment:
| Q |
466 |
aagtgataaataatatagtatactgaagtgcactatagcggacgacgagaaacccctatgtcaaaaccaaatacacagaa--tgaatgcataggttaaaa |
563 |
Q |
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| T |
27755978 |
aagtgataagtaatatagtatactgaagtgcactatagtggacgacgagaaacccctatgtcaaaaccaaatacacagaaattgaatgcataggttaaaa |
27755879 |
T |
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| Q |
564 |
gaggcctcaaatcccttcacaagtcggataaattaagcttgctaaagagtgaactggagtccatagagaaaatgctcccccagataacctgctttaataa |
663 |
Q |
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| T |
27755878 |
gaggcctcgaatcccttca-------gataaattaaccttgctaaagagtgaactggagtccatagagacaatgctcccccaaataacctgctttaatga |
27755786 |
T |
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| Q |
664 |
ggaggagggaatttt---aannnnnnnnnnnaagcaggggagagagagggaaatgtttgtatagactctggcattataatataagttcgaa |
751 |
Q |
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| T |
27755785 |
ggaggagggaattttttatttttttttgaagaagcaggggagagagagggaaatgtttgtatagactctggcattataatataagttcgaa |
27755695 |
T |
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