View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4574-Insertion-4 (Length: 558)

Name: NF4574-Insertion-4
Description: NF4574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4574-Insertion-4
NF4574-Insertion-4
[»] chr4 (3 HSPs)
chr4 (7-517)||(36153568-36154087)
chr4 (374-485)||(36153421-36153532)
chr4 (515-558)||(36154109-36154152)
[»] chr7 (2 HSPs)
chr7 (7-199)||(30859966-30860160)
chr7 (374-474)||(30859826-30859928)
[»] chr6 (4 HSPs)
chr6 (241-349)||(31779251-31779359)
chr6 (118-220)||(31779146-31779240)
chr6 (22-62)||(31779360-31779400)
chr6 (374-445)||(32879700-32879770)
[»] chr8 (4 HSPs)
chr8 (239-293)||(423949-424004)
chr8 (24-77)||(27518247-27518302)
chr8 (399-485)||(13461156-13461244)
chr8 (80-117)||(27518456-27518493)
[»] chr5 (4 HSPs)
chr5 (374-445)||(25994554-25994624)
chr5 (374-445)||(25994919-25994989)
chr5 (22-64)||(10609148-10609190)
chr5 (374-485)||(14410742-14410854)
[»] chr3 (1 HSPs)
chr3 (374-462)||(16280921-16281008)
[»] chr2 (2 HSPs)
chr2 (22-64)||(44158397-44158439)
chr2 (418-487)||(42882516-42882585)


Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 7 - 517
Target Start/End: Original strand, 36153568 - 36154087
Alignment:
Q  7 acattccgtgtatgtcagaagctgccaagcaaggcacatgggagccaaagggaagtgagggagaataatatttgtgtaagtagtaagtaccattccaata 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36153568 acattccgtgtatgtcagaagcagccaagcaaggcacatgggagccaaagggaagtgagggagaataatatttgtgtaagtagtaagtaccattccaata 36153667  T
Q  107 ctgacatgatatctccaaaacattcaccacgtttctgttaaaaaatgcatcattactttccaaccaatataccaaacctttcttagccaaattgaaccat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  36153668 ctgacatgatatctccaaaacattcaccacgtttctgttaaaaaatgcatcattattttccaaccaatataccaaacctttcttaaccaaattgaaccat 36153767  T
Q  207 gctaaggtaaacaccgtagatggatggagaagtgtatttgcattaaagtttcatccccatgtgattgttcttttaattaacactcacactcactttgtta 306  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36153768 gctatggtaaacaccgtagatggatggagaagtgtatttgcattaaagtttcatccccatgtgattgttcttttaattaacactcacactcactttgtta 36153867  T
Q  307 tgcatcataaaaccattatttgggtggcttggctattcttaaaggttgaaaatgcaaaaacaaa---------acctaactcacgcaggtgttaattttc 397  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         |  ||||||||||||||||||||||||    
T  36153868 tgcatcataaaaccattatttgggtggcttggctaatcttaaaggttgaaaatgcaaaaacaaaatttgcttgagttaactcacgcaggtgttaattttc 36153967  T
Q  398 ggcgtgatttaattcacgcggcgtaacttaaatcacgcatgtgtaaaatctaggttccgttttttacacttgcgttaaataactagcgtataagcatttt 497  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||  |||||||    
T  36153968 ggcgtgacttaactcacgcggcgtaacttaagtcacgcatgtgtaaaatctaagtttcgttttttacacttgcgttaaataactagcgcatgggcatttt 36154067  T
Q  498 cagaatgggtgcaaggtgca 517  Q
    | |||||| |||| ||||||    
T  36154068 cggaatggctgcagggtgca 36154087  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 485
Target Start/End: Complemental strand, 36153532 - 36153421
Alignment:
Q  374 taactcacgcaggtgttaattttcggcgtgatttaattcacgcggcgtaacttaaatcacgcatgtgtaaaatctaggttccgttttttacacttgcgtt 473  Q
    ||||||| ||| ||||||||||||||  ||| |||| ||| | | |||||||||| ||| ||||||||||||  || || || |||||||||||||||||    
T  36153532 taactcatgcatgtgttaattttcggtatgagttaactcatgtgacgtaacttaagtcatgcatgtgtaaaaattaagtcccattttttacacttgcgtt 36153433  T
Q  474 aaataactagcg 485  Q
    |  |||||||||    
T  36153432 acttaactagcg 36153421  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 515 - 558
Target Start/End: Original strand, 36154109 - 36154152
Alignment:
Q  515 gcagaaatcttgtatttgcatgatcggaaaatataccccataca 558  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  36154109 gcagaaatcttgtatttgcatgatcggaaaatatacctcataca 36154152  T

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Target: chr7 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 30859966 - 30860160
Alignment:
Q  7 acattccgtgtatgtcagaagctgccaagcaaggcacat--gggagccaaagggaagtgagggagaataatatttgtgtaagtagtaagtaccattccaa 104  Q
    |||||| ||||||||  ||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30859966 acattctgtgtatgttggaagcagccaagcaaggcacatatgggagccaaagtgaagtgagggagaataatatttgtgtaagtagtaagtaccattccaa 30860065  T
Q  105 tactgacatgatatctccaaaacattcaccacgtttctgttaaaaaatgcatcattactttccaaccaatataccaaacctttcttagccaaatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30860066 tactgacatgatatctccaaaacattcaccacgtttctgttaaaaaatgcatcattactttccaaccaatatgccaaacctttcttagccaaatt 30860160  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 474
Target Start/End: Complemental strand, 30859928 - 30859826
Alignment:
Q  374 taactcacgcaggtgttaattttcggcgtgatttaattcacgcggcgtaacttaaatcacgcatgtgtaaaatctaggttccg--ttttttacacttgcg 471  Q
    ||||||| |||||||||||||||||| |||| |||| ||||||||||| |||||| ||| |||||||||||| ||| || |||  |||||||||||||||    
T  30859928 taactcatgcaggtgttaattttcggtgtgagttaactcacgcggcgtgacttaagtcatgcatgtgtaaaaactaagtcccgttttttttacacttgcg 30859829  T
Q  472 tta 474  Q
    |||    
T  30859828 tta 30859826  T

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Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 241 - 349
Target Start/End: Complemental strand, 31779359 - 31779251
Alignment:
Q  241 tatttgcattaaagtttcatccccatgtgattgttcttttaattaacactcacactcactttgttatgcatcataaaaccattatttgggtggcttggct 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||    
T  31779359 tatttgcattaaagtttcatccccatgtgattgttcttttaattaacactcacactcactttgttatgcatcataaaaccattattggggtgacttgact 31779260  T
Q  341 attcttaaa 349  Q
     ||||||||    
T  31779259 cttcttaaa 31779251  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 31779146 - 31779240
Alignment:
Q  118 tctccaaaacattcaccacgtttctgttaaaaaatgcatcattactttccaaccaatataccaaacctttcttagccaaattgaaccatgctaaggtaaa 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  31779146 tctccaaaacattcaccacatttctgttaaaaaatgcatcattactttccaaccaatata--------ttcttagccaaattgaaccatgctaaggtaaa 31779237  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 31779400 - 31779360
Alignment:
Q  22 cagaagctgccaagcaaggcacatgggagccaaagggaagt 62  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  31779400 cagaagcagccaagcaaggcacatgggagccaaagtgaagt 31779360  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 32879770 - 32879700
Alignment:
Q  374 taactcacgcaggtgttaattttcggcgtgatttaattcacgcggcgtaacttaaatcacgcatgtgtaaaa 445  Q
    ||||||||||| ||||||| |||| |||||| |||| |||||| |||| |||||| ||||||| ||||||||    
T  32879770 taactcacgcatgtgttaa-tttcagcgtgagttaactcacgcagcgtgacttaagtcacgcaagtgtaaaa 32879700  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 423949 - 424004
Alignment:
Q  239 tgtatttgcattaaagtttcatccc-catgtgattgttcttttaattaacactcac 293  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  423949 tgtatttgcattaaagtttcatcccacatgtgattgttcttttaattaacactcac 424004  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 27518247 - 27518302
Alignment:
Q  24 gaagctgccaagcaaggcacat--gggagccaaagggaagtgagggagaataatat 77  Q
    ||||| ||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  27518247 gaagcagccaagcaaggcacatatgggagccaaagtgaagtgagggagaataatat 27518302  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 13461244 - 13461156
Alignment:
Q  399 gcgtgatttaattcacgcggcgtaacttaaatcacgcatgtgtaaaatctaggttccg--ttttttacacttgcgttaaataactagcg 485  Q
    |||||| |||| || || ||||| |||||| |||||||||||||||| ||| ||  ||  ||||||| ||||||||||| |||||||||    
T  13461244 gcgtgagttaactcgcgtggcgtgacttaagtcacgcatgtgtaaaaactaagtctcgtattttttatacttgcgttaattaactagcg 13461156  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 27518456 - 27518493
Alignment:
Q  80 gtgtaagtagtaagtaccattccaatactgacatgata 117  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  27518456 gtgtacgtagtaagtaccattcaaatactgacatgata 27518493  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 25994624 - 25994554
Alignment:
Q  374 taactcacgcaggtgttaattttcggcgtgatttaattcacgcggcgtaacttaaatcacgcatgtgtaaaa 445  Q
    |||||||||||||||||||||| | |||||| |||| ||| ||||||| |||||| ||||||||||||||||    
T  25994624 taactcacgcaggtgttaattt-ctgcgtgagttaactcaggcggcgtgacttaagtcacgcatgtgtaaaa 25994554  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 445
Target Start/End: Original strand, 25994919 - 25994989
Alignment:
Q  374 taactcacgcaggtgttaattttcggcgtgatttaattcacgcggcgtaacttaaatcacgcatgtgtaaaa 445  Q
    ||||||||||| ||||||||| ||| ||||| |||| ||| || |||| |||||| ||||||||||||||||    
T  25994919 taactcacgcaagtgttaattctcg-cgtgagttaactcatgcagcgtgacttaagtcacgcatgtgtaaaa 25994989  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 10609190 - 10609148
Alignment:
Q  22 cagaagctgccaagcaaggcacatgggagccaaagggaagtga 64  Q
    ||||||| |||||||| |||||||||||||||||| |||||||    
T  10609190 cagaagcagccaagcagggcacatgggagccaaagtgaagtga 10609148  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 485
Target Start/End: Original strand, 14410742 - 14410854
Alignment:
Q  374 taactcacgcaggtgttaattttcggcgtgatttaattcacgcggcgtaacttaaatcacgcatgtgtaaaatctaggttccg--ttttttacacttgcg 471  Q
    ||||||||||| |||||||||| | || ||| |||| |||||| |||| |||||| |||| ||||||||||| ||| ||  ||  ||||||||||| |||    
T  14410742 taactcacgcacgtgttaattt-cagcatgagttaactcacgcagcgtgacttaagtcacacatgtgtaaaaactaagtcacgaattttttacactcgcg 14410840  T
Q  472 ttaaataactagcg 485  Q
    |||  |||||||||    
T  14410841 ttagttaactagcg 14410854  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 462
Target Start/End: Original strand, 16280921 - 16281008
Alignment:
Q  374 taactcacgcaggtgttaattttcggcgtgatttaattcacgcggcgtaacttaaatcacgcatgtgtaaaatctaggttccgtttttt 462  Q
    |||||||| || |||||||||| |||||||| |||| ||||||||||| |||||| ||||||| |||||||| |||  | |||||||||    
T  16280921 taactcacccaagtgttaattt-cggcgtgagttaactcacgcggcgtgacttaagtcacgcaagtgtaaaaactaaatcccgtttttt 16281008  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 44158397 - 44158439
Alignment:
Q  22 cagaagctgccaagcaaggcacatgggagccaaagggaagtga 64  Q
    ||||||| ||||||||||||||||||||||||||| |||||||    
T  44158397 cagaagcagccaagcaaggcacatgggagccaaagtgaagtga 44158439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 487
Target Start/End: Complemental strand, 42882585 - 42882516
Alignment:
Q  418 gcgtaacttaaatcacgcatgtgtaaaatctaggttccgttttttacacttgcgttaaataactagcgta 487  Q
    |||| |||||| |||||||||||||||| ||| ||    ||||||||||||||||||  |||||||||||    
T  42882585 gcgtgacttaagtcacgcatgtgtaaaaactaagtcaatttttttacacttgcgttagttaactagcgta 42882516  T

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