View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4574_high_2 (Length: 235)

Name: NF4574_high_2
Description: NF4574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4574_high_2
NF4574_high_2
[»] chr1 (11 HSPs)
chr1 (18-187)||(17318511-17318680)
chr1 (118-235)||(50077078-50077194)
chr1 (16-104)||(17319707-17319795)
chr1 (16-91)||(17308148-17308223)
chr1 (118-187)||(40133657-40133726)
chr1 (118-193)||(50308004-50308078)
chr1 (119-235)||(12302917-12303032)
chr1 (119-171)||(50079331-50079383)
chr1 (184-235)||(17318697-17318748)
chr1 (121-161)||(8347789-8347829)
chr1 (118-157)||(14184109-14184148)
[»] chr2 (7 HSPs)
chr2 (118-235)||(45239385-45239501)
chr2 (118-231)||(38414456-38414568)
chr2 (118-235)||(31733169-31733285)
chr2 (119-187)||(28196334-28196402)
chr2 (120-163)||(17848812-17848855)
chr2 (118-187)||(17848154-17848222)
chr2 (174-233)||(17848887-17848945)
[»] chr3 (11 HSPs)
chr3 (118-235)||(47149341-47149458)
chr3 (119-235)||(3306518-3306633)
chr3 (119-235)||(6231169-6231283)
chr3 (118-235)||(3314403-3314519)
chr3 (122-235)||(51675178-51675290)
chr3 (118-235)||(890194-890309)
chr3 (118-219)||(53590910-53591013)
chr3 (119-161)||(54692069-54692111)
chr3 (118-156)||(23636726-23636764)
chr3 (186-232)||(54691979-54692025)
chr3 (116-156)||(562211-562251)
[»] chr7 (8 HSPs)
chr7 (119-235)||(4296340-4296455)
chr7 (119-235)||(42222888-42223001)
chr7 (118-187)||(20137600-20137669)
chr7 (118-171)||(9680541-9680593)
chr7 (119-187)||(11355010-11355077)
chr7 (119-163)||(24817865-24817909)
chr7 (119-188)||(9678864-9678932)
chr7 (118-155)||(24815587-24815624)
[»] chr5 (8 HSPs)
chr5 (118-235)||(16092629-16092745)
chr5 (118-235)||(31473036-31473151)
chr5 (119-187)||(1190086-1190154)
chr5 (119-188)||(36208298-36208367)
chr5 (175-235)||(1190019-1190078)
chr5 (186-235)||(36208385-36208434)
chr5 (122-171)||(25903825-25903873)
chr5 (174-235)||(25903897-25903957)
[»] chr8 (7 HSPs)
chr8 (118-235)||(40877978-40878093)
chr8 (119-231)||(35872802-35872913)
chr8 (113-233)||(36865325-36865445)
chr8 (119-187)||(30481028-30481096)
chr8 (174-210)||(26268686-26268722)
chr8 (119-187)||(5623229-5623294)
chr8 (174-235)||(5623161-5623221)
[»] chr4 (10 HSPs)
chr4 (119-235)||(19095696-19095811)
chr4 (119-231)||(24447003-24447114)
chr4 (118-219)||(12401248-12401348)
chr4 (119-210)||(38928625-38928715)
chr4 (119-235)||(37313488-37313600)
chr4 (118-187)||(12396337-12396406)
chr4 (118-161)||(33415977-33416020)
chr4 (174-235)||(33415889-33415949)
chr4 (119-188)||(13543808-13543876)
chr4 (119-156)||(18537992-18538029)
[»] chr6 (7 HSPs)
chr6 (118-235)||(3234132-3234247)
chr6 (118-171)||(3396094-3396147)
chr6 (119-180)||(3390132-3390193)
chr6 (118-171)||(32447823-32447876)
chr6 (119-163)||(15719423-15719467)
chr6 (174-235)||(3396171-3396231)
chr6 (118-190)||(26944925-26944995)
[»] scaffold0004 (1 HSPs)
scaffold0004 (119-185)||(79661-79726)
[»] scaffold0045 (1 HSPs)
scaffold0045 (179-235)||(85065-85120)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 17318511 - 17318680
Alignment:
Q  18 ttattatccttccatttgaatggaggtatagcaggacaccattaacaaatgaatcaagatctcctagtttacttcttgttggtggtgttggtgttgctag 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17318511 ttattattcttccatttgaatggaggtatagcaggacaccattaacaaatgaatcaagatctcctagtttacttcttgttggtggtgttggtgttgctgg 17318610  T
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17318611 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatatcggagcacgattt 17318680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 50077194 - 50077078
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||| ||||  |||||||||||||||||||| |||| ||| ||||||  ||||||    
T  50077194 ttgttgtgaaagtgactcaaaattagagaaattgaagtttgttgaagctgtcaaaatcggagcacgattttttggagcagatttggcacttt-aattcgt 50077096  T
Q  218 aacaaatcagagcacgat 235  Q
    || ||||| |||||||||    
T  50077095 aaaaaatcggagcacgat 50077078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 17319707 - 17319795
Alignment:
Q  16 cattattatccttccatttgaatggaggtatagcaggacaccattaacaaatgaatcaagatctcctagtttacttcttgttggtggtg 104  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||||| |||  |||||||    
T  17319707 cattattatccttccatttgaatggaggtatagcaggacaacattcacaaatgaatcaagatgtccaagtttacttgttggcggtggtg 17319795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 17308148 - 17308223
Alignment:
Q  16 cattattatccttccatttgaatggaggtatagcaggacaccattaacaaatgaatcaagatctcctagtttactt 91  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||    
T  17308148 cattattatccttccatttgaatggaggtatagcaggacaacattcacaaatgaatcaagatgtccaagtttactt 17308223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 40133657 - 40133726
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattt 187  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| ||||  ||||||||||||||    
T  40133657 ttgttgtgaaagtgactcaaaattagagaaattgaagtttgctgaagctgtcaaaatcggagcacgattt 40133726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 50308078 - 50308004
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttgga 193  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||| ||||  | ||||||||||||||||||    
T  50308078 ttgttgtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaattggagcacgattttttgga 50308004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 12303032 - 12302917
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgta 218  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||| | ||||   |||||||||||||| | || ||||||| ||| |||| ||| |||    
T  12303032 tgttgtgaaagtgattcaaaattggagaaattgaagtttgctaaagttgtcaaaagcggagcacgattttctagagcagaattaacattttc-atttgta 12302934  T
Q  219 acaaatcagagcacgat 235  Q
    | ||||| |||||||||    
T  12302933 aaaaatcggagcacgat 12302917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 50079383 - 50079331
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaa 171  Q
    ||||||||||||||||| |||| | ||||||||||||||||||||||| ||||    
T  50079383 tgttgtgaaagtgactccaaattgaagaaattgaagtttgctgaagctgtcaa 50079331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 17318697 - 17318748
Alignment:
Q  184 attttttggaccagaattgacactttctattcgtaacaaatcagagcacgat 235  Q
    |||||||||||||||||||||| |||| |||||||| ||||| |||||||||    
T  17318697 attttttggaccagaattgacagtttccattcgtaaaaaatcggagcacgat 17318748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 8347829 - 8347789
Alignment:
Q  121 ttgtgaaagtgactcaaaatcggagaaattgaagtttgctg 161  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  8347829 ttgtgaaagtgactcaaaatctgagaaattgaaatttgctg 8347789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 14184148 - 14184109
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagttt 157  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  14184148 ttgttgtgaaagtgacttaaaattggagaaattgaagttt 14184109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 45239501 - 45239385
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  |||||||||||||||| ||| |||||||| ||||||| ||||||    
T  45239501 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacgatttttcggagcagaattggcactttc-attcgt 45239403  T
Q  218 aacaaatcagagcacgat 235  Q
    || ||||| |||||||||    
T  45239402 aaaaaatcggagcacgat 45239385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 38414568 - 38414456
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  | |||| |||| ||||||||||||||||| ||||||| ||||||    
T  38414568 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaattggagtacga-tttttggaccagaattggcactttccattcgt 38414470  T
Q  218 aacaaatcagagca 231  Q
    || ||||| |||||    
T  38414469 aaaaaatcggagca 38414456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 31733285 - 31733169
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||  | |||| |||| |||||| | |||||||||||||||| ||||||    
T  31733285 ttgttgtgaaagtgactcaaaattggagaaattgaagtttggtgaagctgtcaaaattggagtacga-tttttgaagcagaattgacactttccattcgt 31733187  T
Q  218 aacaaatcagagcacgat 235  Q
    || ||||| |||||||||    
T  31733186 aaaaaatcggagcacgat 31733169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 28196334 - 28196402
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattt 187  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||  |||||| |||||||    
T  28196334 tgttgtgaaagtgactcaaaaatggagaaattgaagtttgctgaagctgtcaaaatcggagtacgattt 28196402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 17848812 - 17848855
Alignment:
Q  120 gttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaa 163  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  17848812 gttgtgaaagtgactcaaaattggagaaattgaagtttgctgaa 17848855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 17848154 - 17848222
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattt 187  Q
    |||||| |||||||||||||||| |||||||||| |||||||||||||| ||||  ||||||| ||||||    
T  17848154 ttgttgggaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcccgattt 17848222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 17848887 - 17848945
Alignment:
Q  174 tcggagcacgattttttggaccagaattgacactttctattcgtaacaaatcagagcacg 233  Q
    ||||| ||||||||||||||  ||||||||||||||| |||||||| ||||| |||||||    
T  17848887 tcggaacacgattttttggagaagaattgacactttc-attcgtaaaaaatctgagcacg 17848945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 47149458 - 47149341
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||  |||||||||||||||||||| |||||||||||||||| ||||||    
T  47149458 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgatgaagctgtcaaaatcggagcacgattttttggagcagaattgacactttc-attcgt 47149360  T
Q  218 -aacaaatcagagcacgat 235  Q
     || ||||| |||||||||    
T  47149359 aaaaaaatcggagcacgat 47149341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 3306518 - 3306633
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgta 218  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||| ||||  ||||||||||||||| ||||  ||||||| ||||||| |||||||    
T  3306518 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctaaagctgtcaaaatcggagcacgattttctggagtagaattggcactttc-attcgta 3306616  T
Q  219 acaaatcagagcacgat 235  Q
    | ||||| |||||||||    
T  3306617 aaaaatcggagcacgat 3306633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 6231169 - 6231283
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgta 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||| |  |||||||  ||||||||||||||| |||||||    
T  6231169 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcac-aacttttggagtagaattgacactttc-attcgta 6231266  T
Q  219 acaaatcagagcacgat 235  Q
    | ||||| |||||||||    
T  6231267 aaaaatcggagcacgat 6231283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 3314403 - 3314519
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    ||||||||||||||| ||||||| | ||||||||||||||| ||||||| ||||  | ||||||||||||| | || |||||||||||||||| ||||||    
T  3314403 ttgttgtgaaagtgattcaaaattgaagaaattgaagtttgttgaagctgtcaaaataggagcacgattttctagagcagaattgacactttc-attcgt 3314501  T
Q  218 aacaaatcagagcacgat 235  Q
    || ||||| |||||||||    
T  3314502 aaaaaatcggagcacgat 3314519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 51675290 - 51675178
Alignment:
Q  122 tgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgtaaca 221  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||| ||||  ||||||||||||||| |||| |||||||| ||||||  |||||||| |    
T  51675290 tgtgaaagtgactcaaaattggagaaattgatgttttctgaagctgtcaaaatcggagcacgattttctggagcagaattgtcacttt-gattcgtaaaa 51675192  T
Q  222 aatcagagcacgat 235  Q
    |||| |||||||||    
T  51675191 aatcggagcacgat 51675178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 890309 - 890194
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||  ||||| ||| | ||||||||  ||||||| ||||||| ||||||    
T  890309 ttgttatgaaagtgactcaaaattggagaaattgaagtttgttgaagctgtcaaaatcggaccac-aatttttggagtagaattggcactttc-attcgt 890212  T
Q  218 aacaaatcagagcacgat 235  Q
    || |||||||||||||||    
T  890211 aaaaaatcagagcacgat 890194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 53590910 - 53591013
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacga---ttttttggaccagaattgacactttctatt 214  Q
    ||||||||||| | ||||||||| | ||||||||||||||||||||||| ||||  |||||| ||||   ||||||||| |||||||||||||||| |||    
T  53590910 ttgttgtgaaaataactcaaaattgaagaaattgaagtttgctgaagctgtcaaaatcggagtacgatttttttttggagcagaattgacactttc-att 53591008  T
Q  215 cgtaa 219  Q
    |||||    
T  53591009 cgtaa 53591013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 54692111 - 54692069
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctg 161  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  54692111 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctg 54692069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 23636726 - 23636764
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtt 156  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  23636726 ttgttgtgaaagtgactcaaaattggagaaattggagtt 23636764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 54692025 - 54691979
Alignment:
Q  186 tttttggaccagaattgacactttctattcgtaacaaatcagagcac 232  Q
    ||||||||||||||||| ||||||| |||||||| ||||| ||||||    
T  54692025 tttttggaccagaattggcactttccattcgtaaaaaatcggagcac 54691979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 562251 - 562211
Alignment:
Q  116 agttgttgtgaaagtgactcaaaatcggagaaattgaagtt 156  Q
    ||||||||||||||||||||||||| | |||||||| ||||    
T  562251 agttgttgtgaaagtgactcaaaattgaagaaattggagtt 562211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 4296455 - 4296340
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgta 218  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||  |||||||||||||||||||| |||||||| ||||||| ||||| |    
T  4296455 tgttgtgaaagtgactcaaaattggagaaattgaagcttgctgaagctgtcaaaatcggagcacgattttttggagcagaattgccactttc-attcgaa 4296357  T
Q  219 acaaatcagagcacgat 235  Q
    | ||||| |||||||||    
T  4296356 aaaaatcggagcacgat 4296340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 42222888 - 42223001
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgta 218  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||| ||||  ||||||||||| |||||||| |||||||||||||||| |||||||    
T  42222888 tgttgtgaaagtgacttaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcacga-tttttggagcagaattgacactttc-attcgta 42222984  T
Q  219 acaaatcagagcacgat 235  Q
    | |||||||||||||||    
T  42222985 aaaaatcagagcacgat 42223001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 20137669 - 20137600
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattt 187  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| | |   ||||||||||||||    
T  20137669 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgttataatcggagcacgattt 20137600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 9680541 - 9680593
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaa 171  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  9680541 ttgttgtgaaagtgactcaaaattggagaaatt-aagtttgctgaagctgtcaa 9680593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 11355010 - 11355077
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattt 187  Q
    |||||||||||||||||||||| | |||||||| |||||||||||||| ||||  ||||||| ||||||    
T  11355010 tgttgtgaaagtgactcaaaattgaagaaattg-agtttgctgaagctgtcaaaatcggagcccgattt 11355077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 24817909 - 24817865
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaa 163  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  24817909 tgttgtgaaagtgactcaaaattggagaaattgaagtttgttgaa 24817865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 9678864 - 9678932
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgatttt 188  Q
    |||||||||| ||||||||||| ||||||||| |||| || ||||||| ||||  ||||||||| |||||    
T  9678864 tgttgtgaaaatgactcaaaattggagaaatt-aagtatgttgaagctgtcaaaatcggagcacaatttt 9678932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 24815624 - 24815587
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagt 155  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  24815624 ttgttgtgaaagtcactcaaaattggagaaattgaagt 24815587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 16092745 - 16092629
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||  |||||||||||||||| | | |||||||| ||||||| ||||||    
T  16092745 ttgttgtgaaactgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacgatttttcgaagcagaattggcactttc-attcgt 16092647  T
Q  218 aacaaatcagagcacgat 235  Q
    || ||||| |||||||||    
T  16092646 aaaaaatcggagcacgat 16092629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 31473151 - 31473036
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||  ||||||||||| ||| |||| |||||||| ||| ||| |||| |    
T  31473151 ttgttgtgaaagtgatttaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacga-tttatggagcagaattggcacattc-attctt 31473054  T
Q  218 aacaaatcagagcacgat 235  Q
    || ||||| |||||||||    
T  31473053 aaaaaatcggagcacgat 31473036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 1190154 - 1190086
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattt 187  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||  | ||||||||||||    
T  1190154 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaattggagcacgattt 1190086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 36208298 - 36208367
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgatttt 188  Q
    |||||||||||||||| ||||| || |||||||||||||||||||||| ||||  |||||||||||||||    
T  36208298 tgttgtgaaagtgacttaaaattggtgaaattgaagtttgctgaagctgtcaaaatcggagcacgatttt 36208367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 1190078 - 1190019
Alignment:
Q  175 cggagcacgattttttggaccagaattgacactttctattcgtaacaaatcagagcacgat 235  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||| ||||| |||||||||    
T  1190078 cggagcacgattttttggagcagaattggcactttc-attcgtaaaaaatcggagcacgat 1190019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 36208385 - 36208434
Alignment:
Q  186 tttttggaccagaattgacactttctattcgtaacaaatcagagcacgat 235  Q
    |||||||| || ||||||||||||| |||||||| |||||||||||||||    
T  36208385 tttttggagcaaaattgacactttccattcgtaaaaaatcagagcacgat 36208434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 25903825 - 25903873
Alignment:
Q  122 tgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaa 171  Q
    ||||||||||| ||||||| |||||||||| ||||||| |||||||||||    
T  25903825 tgtgaaagtgattcaaaattggagaaattg-agtttgccgaagctatcaa 25903873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 25903897 - 25903957
Alignment:
Q  174 tcggagcacgattttttggaccagaattgacactttctattcgtaacaaatcagagcacgat 235  Q
    |||||||| ||||||| ||| ||||||||||||||| ||||| ||| ||||| |||||||||    
T  25903897 tcggagcatgatttttcggagcagaattgacacttt-tattcataaaaaatcggagcacgat 25903957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 40878093 - 40877978
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||  |||||||||||||||||| | |||||||| ||||||| ||||||    
T  40878093 ttgttgtgaaagtgactcaaaattggagaaattga-gtttgctgaagctgtcaaaatcggagcacgattttttgaagcagaattggcactttc-attcgt 40877996  T
Q  218 aacaaatcagagcacgat 235  Q
    || ||||| ||| |||||    
T  40877995 aaaaaatcggagtacgat 40877978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 35872913 - 35872802
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgta 218  Q
    ||||||||||| |||||||||| | | ||||||||||||||||||||| ||||  | |||||||||||||| ||| |||||||||||||||| |||||||    
T  35872913 tgttgtgaaagggactcaaaattgaataaattgaagtttgctgaagctgtcaaaattggagcacgatttttcggagcagaattgacactttc-attcgta 35872815  T
Q  219 acaaatcagagca 231  Q
    | ||||| |||||    
T  35872814 aaaaatcggagca 35872802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 36865325 - 36865445
Alignment:
Q  113 gctagttgttgtgaaagtgactcaaaatcggagaaattgaag-tttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttct 211  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| |||||||||| | ||||  |||||| |||| |||||||| |||||||| |||||||     
T  36865325 gctatttgttgtgaaagtgacttaaaattggagaaattgaagttttgctgaagttgtcaaaatcggagtacga-tttttggagcagaattggcactttcc 36865423  T
Q  212 attcgtaacaaatcagagcacg 233  Q
    |||||||| ||||| |||||||    
T  36865424 attcgtaaaaaatcggagcacg 36865445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 30481096 - 30481028
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattt 187  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| | ||||  ||||||||||||||    
T  30481096 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgattt 30481028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 26268722 - 26268686
Alignment:
Q  174 tcggagcacgattttttggaccagaattgacactttc 210  Q
    |||||||||||||||| ||||||||||||||||||||    
T  26268722 tcggagcacgatttttgggaccagaattgacactttc 26268686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 5623294 - 5623229
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattt 187  Q
    ||||||||||||   ||||||| ||||||||| ||||||||||||||| ||||  ||||||| ||||||    
T  5623294 tgttgtgaaagt---tcaaaattggagaaattaaagtttgctgaagctgtcaaaatcggagcccgattt 5623229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 5623221 - 5623161
Alignment:
Q  174 tcggagcacgattttttggaccagaattgacactttctattcgtaacaaatcagagcacgat 235  Q
    |||||||||||||| ||||| |||||||| ||||||| |||||||  ||||| |||||||||    
T  5623221 tcggagcacgatttattggagcagaattggcactttc-attcgtacaaaatcggagcacgat 5623161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 19095696 - 19095811
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgta 218  Q
    |||||||||||||| | ||||| ||||||||||||||||||||||| | ||||  |||||||||||  ||||||| |||||||||||||||| |||||||    
T  19095696 tgttgtgaaagtgatttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga-cttttggagcagaattgacactttccattcgta 19095794  T
Q  219 acaaatcagagcacgat 235  Q
    | ||||| |||||||||    
T  19095795 aaaaatcggagcacgat 19095811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 24447114 - 24447003
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgta 218  Q
    ||||||||||| |||||||||| | | ||||||||||||||||||||| ||||  | |||||||||||||| ||| |||||||||||||||| |||||||    
T  24447114 tgttgtgaaagggactcaaaattgaataaattgaagtttgctgaagctgtcaaaattggagcacgatttttcggagcagaattgacactttc-attcgta 24447016  T
Q  219 acaaatcagagca 231  Q
    | ||||| |||||    
T  24447015 aaaaatcggagca 24447003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 12401348 - 12401248
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||  |||||| |||||||||| || |||||||| ||||||| ||||||    
T  12401348 ttgttgtgaaagttactcaaaattggagaaattcaagtttgctgaagctgtcaaaatcggagtacgattttttagagcagaattggcactttc-attcgt 12401250  T
Q  218 aa 219  Q
    ||    
T  12401249 aa 12401248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 38928715 - 38928625
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttc 210  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||  |||||||||||||| ||||| |||||||| |||||||    
T  38928715 tgttgtgaaattgactcaaaattggagaaattga-gtttgctgaagctgtcaaaatcggagcacgatttcttggagcagaattggcactttc 38928625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 37313600 - 37313488
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgta 218  Q
    |||||||||||||||||||||| |||||||||||||||| | |||||| ||||  |||||| |||| ||||||||  ||||||||||||||| |||||||    
T  37313600 tgttgtgaaagtgactcaaaattggagaaattgaagtttac-gaagctgtcaaaatcggagtacga-tttttggagaagaattgacactttccattcgta 37313503  T
Q  219 acaaatcagagcacgat 235  Q
      ||||| |||||||||    
T  37313502 --aaatcggagcacgat 37313488  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 12396406 - 12396337
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattt 187  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||  ||||||| ||||||    
T  12396406 ttgttgtgaaagttactcaaaattggagaaattcaagtttgctgaagctgtcaaaatcggagcccgattt 12396337  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 33416020 - 33415977
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctg 161  Q
    ||||||||||||||||||||||| |||||||||||| |||||||    
T  33416020 ttgttgtgaaagtgactcaaaattggagaaattgaaatttgctg 33415977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 33415949 - 33415889
Alignment:
Q  174 tcggagcacgattttttggaccagaattgacactttctattcgtaacaaatcagagcacgat 235  Q
    |||||||||||||||||||| |||||||| ||||||  |||||||| ||||| |||||||||    
T  33415949 tcggagcacgattttttggagcagaattggcacttt-aattcgtaaaaaatcggagcacgat 33415889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 13543808 - 13543876
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgatttt 188  Q
    |||||||||| ||||||||||| ||||||||| |||| || ||||||| ||||  ||||||||| |||||    
T  13543808 tgttgtgaaaatgactcaaaattggagaaatt-aagtatgttgaagctgtcaaaatcggagcacaatttt 13543876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 18538029 - 18537992
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtt 156  Q
    |||||||||||||||||||||| | |||||||||||||    
T  18538029 tgttgtgaaagtgactcaaaattgaagaaattgaagtt 18537992  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 3234247 - 3234132
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgattttttggaccagaattgacactttctattcgt 217  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||| ||||  ||||||  ||||||| ||    ||||||||||||||| ||||||    
T  3234247 ttgtggtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagtccgattttatgttgtagaattgacactttc-attcgt 3234150  T
Q  218 aacaaatcagagcacgat 235  Q
    || ||||| |||||||||    
T  3234149 aaaaaatcggagcacgat 3234132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 3396094 - 3396147
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaa 171  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  3396094 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaa 3396147  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 3390132 - 3390193
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagc 180  Q
    |||||||||||||||||||||| |||||||||||||||| | |||||| ||||  |||||||    
T  3390132 tgttgtgaaagtgactcaaaattggagaaattgaagtttacagaagctgtcaaaatcggagc 3390193  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 32447876 - 32447823
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaa 171  Q
    ||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||    
T  32447876 ttgttgtgaaagtgactcaaaattggagaaatttaagtttgttgaagctgtcaa 32447823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 15719423 - 15719467
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaa 163  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  15719423 tgttgtgaaagtgactcaaaattggagaaattaaagtttgctgaa 15719467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 3396171 - 3396231
Alignment:
Q  174 tcggagcacgattttttggaccagaattgacactttctattcgtaacaaatcagagcacgat 235  Q
    ||||||||||||||| |||| |||||||| ||||||| |||||||| ||||| |||||||||    
T  3396171 tcggagcacgattttctggagcagaattggcactttc-attcgtaaaaaatcggagcacgat 3396231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 26944925 - 26944995
Alignment:
Q  118 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgatttttt 190  Q
    ||||||||||||||||||||||| | |||||||| ||||  |||| ||| ||||  |||||| ||||||||||    
T  26944925 ttgttgtgaaagtgactcaaaattgaagaaattggagtt--ctgatgctgtcaaaatcggagtacgatttttt 26944995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 79661 - 79726
Alignment:
Q  119 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatgtcggagcacgat 185  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| ||||  ||||||||||||    
T  79661 tgttgtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcacgat 79726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 85065 - 85120
Alignment:
Q  179 gcacgattttttggaccagaattgacactttctattcgtaacaaatcagagcacgat 235  Q
    ||||||||||||||| |||||||||||||||| |||||||| ||||| || ||||||    
T  85065 gcacgattttttggagcagaattgacactttc-attcgtaaaaaatcggaacacgat 85120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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