View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4574_low_1 (Length: 527)
Name: NF4574_low_1
Description: NF4574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4574_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 91 - 512
Target Start/End: Original strand, 27756538 - 27756947
Alignment:
| Q |
91 |
atattgtattctactttcctctgataacatcatttcttacttgtttcagaaattggaagactgcaatagtttcatctagtccacttatcttcttaggatt |
190 |
Q |
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| T |
27756538 |
atattgtattctagtttcctcttataacatcatttcttgcttgcttcagaaattggaagactgcaatagtttcatctagtccacttatcttcttaggatt |
27756637 |
T |
|
| Q |
191 |
ttttcgacttgttacaacaactggtgtggattatcaggtgggattatactcattgagattcttagaaatttgtgtcaacaaacgttttgacatgcatcta |
290 |
Q |
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| T |
27756638 |
ttttcgacttgttacaacaactggtgtggattatcaggtaggattatactcattgagattcttagaaatttgtgtcaacaaacatttcgacatgcatct- |
27756736 |
T |
|
| Q |
291 |
ctaatactgcatcgtattaaactttaacaa-tataatcgcacatgtgtttttgaaatttccatcaactctgtgtataatcacacatgttaaatgatgtag |
389 |
Q |
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| T |
27756737 |
--------------tattaaactttaacaagtataatcgcacatgtgtttttgaaatttctatcaactctatgtttaatcccacatgttaaatgatgtag |
27756822 |
T |
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| Q |
390 |
-tttccaagactataataatctgacccctatggtttgttttcctatcaactctgatgccatgcatgattggtttagtggggc-annnnnnnngtttgcaa |
487 |
Q |
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| T |
27756823 |
ttttccaagactataataatctgacccctatggtttgttttcctatcaactctgatgccattcatgatggtttgattggggcttttttttttgtttgcaa |
27756922 |
T |
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| Q |
488 |
aaacttttggaagagaagttgtgaa |
512 |
Q |
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| T |
27756923 |
aaacttttgaaagagaagttgtgaa |
27756947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 27756372 - 27756441
Alignment:
| Q |
20 |
ttctaatggtaatactttagggaattttcaactagctcatacaataggcaaagaagcatcattaacatga |
89 |
Q |
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| T |
27756372 |
ttctaatggtaatactttggggaattttcaactagctcatacaataggcaaagaagcattattaacatga |
27756441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 144 - 278
Target Start/End: Original strand, 24167465 - 24167599
Alignment:
| Q |
144 |
tggaagactgcaatagtttcatctagtccacttatcttcttaggattttttcg-acttgttacaacaactggtgtggattatcaggtgggattatactca |
242 |
Q |
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| T |
24167465 |
tggaagattgcagtagcttcttgtagactacttatcttcttaggatttttttttacttgttacaacaattggtgtggattatcaggtgggattatattca |
24167564 |
T |
|
| Q |
243 |
ttgagattcttagaaatttgtgtcaacaaacgtttt |
278 |
Q |
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|||| ||||||||||| ||| |||||||||| |||| |
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| T |
24167565 |
ttgatattcttagaaa-ttgagtcaacaaacatttt |
24167599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 144 - 278
Target Start/End: Complemental strand, 46225874 - 46225739
Alignment:
| Q |
144 |
tggaagactgcaatagtttcatctagtc--cacttatcttcttaggattttttcgacttgttacaacaactggtgtggattatcaggtgggattatactc |
241 |
Q |
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||||||| |||| ||||| ||| ||||| ||||||||||||| ||||||| | || ||||||||||| ||||||||||||||||||||||||||| || |
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| T |
46225874 |
tggaagattgcagtagttccatgtagtctccacttatcttcttgggattttcttaacctgttacaacaattggtgtggattatcaggtgggattatattc |
46225775 |
T |
|
| Q |
242 |
attgagattcttagaaatttgtgtcaacaaacgtttt |
278 |
Q |
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||||| ||||||||||| ||| |||||||||| |||| |
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| T |
46225774 |
attgatattcttagaaa-ttgagtcaacaaacatttt |
46225739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 46225973 - 46225904
Alignment:
| Q |
20 |
ttctaatggtaatactttagggaattttcaactagctcatacaataggcaaagaagcatcattaacatga |
89 |
Q |
| |
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|||||| ||||||| |||||||||||| |||||||||||||||||| || |||||| |||||||||| |
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| T |
46225973 |
ttctaaaggtaatatgttagggaattttttactagctcatacaataggaaagaaagcattattaacatga |
46225904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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