View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4574_low_3 (Length: 272)
Name: NF4574_low_3
Description: NF4574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4574_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 37134710 - 37134854
Alignment:
| Q |
1 |
aaattttattttgtataaaagaaataaaactttttatcatggattagttagttttcactatttgatcaataaattttactattaaatttaatcagatatg |
100 |
Q |
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| T |
37134710 |
aaattttatgttgcataaatgagataaatctttttatcatgcattagttagttttcactgtttgatcaataaattttaccattaaatttaatcagatatg |
37134809 |
T |
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| Q |
101 |
atttattgatgatatggtaaaaaagacatttgtgcacgatgcaag |
145 |
Q |
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| T |
37134810 |
atttattgatgatatggtaaaaaagacacttgtgcacgatgcaag |
37134854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 23141896 - 23141940
Alignment:
| Q |
49 |
tagttttcactatttgatcaataaattttactattaaatttaatc |
93 |
Q |
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| T |
23141896 |
tagttttcactattggatcaataaatttgaccattaaattaaatc |
23141940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 20268682 - 20268795
Alignment:
| Q |
32 |
ttttatcatggattagttagttttcactatttgatcaataaattttactattaaatttaatcagatatgatttattgatgatatggtaaaaaagacattt |
131 |
Q |
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| T |
20268682 |
ttttatcatgcataagttagttttcactgtttgatcaataaaatttaccattaaatttaattagatatgatttattgatcatatggtaaaaaagacactt |
20268781 |
T |
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| Q |
132 |
gtgcacgatgcaag |
145 |
Q |
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| T |
20268782 |
gtgcacgatgcaag |
20268795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 7890409 - 7890462
Alignment:
| Q |
49 |
tagttttcactatttgatcaataaattttactattaaatttaatcagatatgat |
102 |
Q |
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| T |
7890409 |
tagttttcactattggatcaataaatttcaccattaaattaaatgaaatatgat |
7890462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 10191797 - 10191874
Alignment:
| Q |
167 |
gaatgtgtttgaccaaacaattcaaatcattaggaacaataaaaccaatgacttttttcagtaaaaaagcaagatgaa |
244 |
Q |
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| T |
10191797 |
gaatgtgtttgaccaaacaattcaaatcattaggaacaataaaaccaataacttttttcagtaaaaaagcaagatgaa |
10191874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 17680315 - 17680238
Alignment:
| Q |
167 |
gaatgtgtttgaccaaacaattcaaatcattaggaacaataaaaccaatgacttttttcagtaaaaaagcaagatgaa |
244 |
Q |
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| T |
17680315 |
gaatttgtttgaccaaacaattcaaatcattaggaacaataaaaccaataacttttttcagtaaaaaagcaagatgaa |
17680238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 38318089 - 38318140
Alignment:
| Q |
48 |
ttagttttcactatttgatcaataaattttactattaaatttaatcagatat |
99 |
Q |
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| T |
38318089 |
ttagctttcactatttgatcaataaattttaccattaaattaaatgagatat |
38318140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 51234030 - 51234081
Alignment:
| Q |
51 |
gttttcactatttgatcaataaattttactattaaatttaatcagatatgat |
102 |
Q |
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| T |
51234030 |
gttttcactattagatcaatagatcttactattaaattaaatcatatatgat |
51234081 |
T |
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