View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4574_low_5 (Length: 213)

Name: NF4574_low_5
Description: NF4574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4574_low_5
NF4574_low_5
[»] chr5 (16 HSPs)
chr5 (57-151)||(10869459-10869553)
chr5 (57-135)||(17037565-17037644)
chr5 (73-150)||(37233070-37233148)
chr5 (65-111)||(42076077-42076123)
chr5 (57-131)||(5079067-5079142)
chr5 (59-114)||(9333582-9333637)
chr5 (60-141)||(9354382-9354464)
chr5 (57-114)||(12042198-12042255)
chr5 (57-114)||(31068984-31069040)
chr5 (7-55)||(10869383-10869431)
chr5 (57-131)||(7410846-7410921)
chr5 (57-135)||(19985017-19985096)
chr5 (40-114)||(40402030-40402104)
chr5 (60-130)||(30786292-30786363)
chr5 (57-98)||(18191886-18191927)
chr5 (166-206)||(15971089-15971129)
[»] chr6 (16 HSPs)
chr6 (57-150)||(23264480-23264574)
chr6 (57-131)||(16734827-16734902)
chr6 (66-114)||(29667936-29667984)
chr6 (57-114)||(10935802-10935859)
chr6 (57-114)||(15361737-15361794)
chr6 (73-135)||(9631154-9631217)
chr6 (57-131)||(11936770-11936845)
chr6 (57-131)||(11948750-11948825)
chr6 (57-135)||(12591855-12591934)
chr6 (60-135)||(6684119-6684194)
chr6 (57-135)||(14669345-14669424)
chr6 (57-114)||(4485586-4485643)
chr6 (73-114)||(23904373-23904414)
chr6 (57-135)||(17719722-17719801)
chr6 (57-111)||(15690460-15690514)
chr6 (58-104)||(34374848-34374894)
[»] chr3 (16 HSPs)
chr3 (57-133)||(26707881-26707958)
chr3 (57-114)||(16457352-16457409)
chr3 (58-113)||(2943236-2943291)
chr3 (57-135)||(5498500-5498579)
chr3 (57-131)||(13846014-13846089)
chr3 (57-114)||(2550188-2550245)
chr3 (67-135)||(9633441-9633510)
chr3 (57-135)||(1627946-1628025)
chr3 (57-131)||(7407757-7407832)
chr3 (57-110)||(1654598-1654651)
chr3 (57-106)||(27259474-27259523)
chr3 (82-133)||(26735681-26735733)
chr3 (57-130)||(1613217-1613291)
chr3 (57-114)||(36035311-36035368)
chr3 (59-111)||(35083000-35083052)
chr3 (73-112)||(27713462-27713501)
[»] chr1 (13 HSPs)
chr1 (57-114)||(3399644-3399701)
chr1 (57-135)||(12189974-12190053)
chr1 (57-135)||(16222800-16222879)
chr1 (57-114)||(5911685-5911742)
chr1 (57-114)||(28636925-28636982)
chr1 (57-133)||(897477-897553)
chr1 (57-114)||(15204616-15204673)
chr1 (57-114)||(15214349-15214406)
chr1 (66-114)||(1843983-1844031)
chr1 (66-131)||(13208643-13208709)
chr1 (57-104)||(37097371-37097418)
chr1 (57-112)||(39368663-39368718)
chr1 (57-114)||(51758775-51758832)
[»] chr2 (11 HSPs)
chr2 (57-150)||(11017479-11017573)
chr2 (57-130)||(41573415-41573489)
chr2 (57-114)||(24479174-24479231)
chr2 (57-135)||(7718207-7718286)
chr2 (57-135)||(30267025-30267104)
chr2 (57-131)||(31342719-31342794)
chr2 (58-114)||(15513690-15513746)
chr2 (58-114)||(40016614-40016670)
chr2 (67-135)||(44920989-44921058)
chr2 (67-114)||(7702461-7702508)
chr2 (74-132)||(22966564-22966623)
[»] chr8 (18 HSPs)
chr8 (57-135)||(6801829-6801908)
chr8 (57-131)||(25638829-25638904)
chr8 (57-131)||(28249078-28249153)
chr8 (57-131)||(45356115-45356190)
chr8 (57-114)||(5650966-5651023)
chr8 (57-114)||(6403615-6403672)
chr8 (57-114)||(29345453-29345510)
chr8 (61-113)||(5000705-5000757)
chr8 (57-132)||(17634473-17634549)
chr8 (57-132)||(25637666-25637742)
chr8 (59-111)||(29553653-29553705)
chr8 (59-111)||(31347373-31347425)
chr8 (57-135)||(19369909-19369988)
chr8 (57-135)||(19448470-19448549)
chr8 (57-135)||(19532527-19532606)
chr8 (57-135)||(5528765-5528844)
chr8 (73-135)||(6223439-6223502)
chr8 (57-133)||(14997643-14997720)
[»] chr7 (13 HSPs)
chr7 (57-135)||(9242483-9242562)
chr7 (59-133)||(26608540-26608615)
chr7 (57-133)||(30089757-30089834)
chr7 (57-135)||(26224977-26225056)
chr7 (57-114)||(4685424-4685481)
chr7 (57-133)||(20277361-20277438)
chr7 (57-114)||(26205436-26205493)
chr7 (58-114)||(16086510-16086566)
chr7 (57-132)||(26619106-26619181)
chr7 (67-114)||(16170303-16170350)
chr7 (57-114)||(10022146-10022203)
chr7 (57-111)||(26621115-26621169)
chr7 (59-108)||(3374325-3374374)
[»] chr4 (12 HSPs)
chr4 (57-114)||(4904161-4904218)
chr4 (57-114)||(24559016-24559073)
chr4 (67-113)||(48464072-48464118)
chr4 (57-133)||(21539273-21539349)
chr4 (57-131)||(43600289-43600364)
chr4 (57-135)||(47066033-47066112)
chr4 (57-135)||(1684951-1685030)
chr4 (57-131)||(4881072-4881147)
chr4 (58-135)||(53300374-53300452)
chr4 (61-110)||(26075222-26075271)
chr4 (61-107)||(45641677-45641723)
chr4 (82-114)||(21317485-21317517)
[»] scaffold0576 (1 HSPs)
scaffold0576 (57-114)||(6721-6778)
[»] scaffold0684 (1 HSPs)
scaffold0684 (57-135)||(746-825)
[»] scaffold0069 (1 HSPs)
scaffold0069 (57-135)||(40697-40776)
[»] scaffold0002 (1 HSPs)
scaffold0002 (57-112)||(446306-446361)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 10869459 - 10869553
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccctgttactaaagagttacaggaacactttatg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  10869459 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccctcttactaaagagttacggtaacactttatg 10869553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 17037565 - 17037644
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||    
T  17037565 ctaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgttactaaagagtt 17037644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 37233070 - 37233148
Alignment:
Q  73 gttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagttacaggaacactttat 150  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| |||| ||| |||| |||||    
T  37233070 gttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaacattttat 37233148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 42076077 - 42076123
Alignment:
Q  65 tgaaaattgttactaattaaatttagtaacatttgaacaattgttag 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42076077 tgaaaattgttactaattaaatttagtaacatttgaacaattgttag 42076123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 5079142 - 5079067
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||| | ||| |||||||||||    
T  5079142 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 5079067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 9333637 - 9333582
Alignment:
Q  59 aaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  9333637 aaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggta 9333582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 9354464 - 9354382
Alignment:
Q  60 aatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaagagttacagga 141  Q
    ||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||| | ||| |||||||||| || |||||||    
T  9354464 aatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaaagcccatgttactaaaaagctacagga 9354382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 12042255 - 12042198
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  12042255 ctaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggta 12042198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 31069040 - 31068984
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  31069040 ctaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggta 31068984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 10869383 - 10869431
Alignment:
Q  7 agttaggtagtgataattagtcacgtccagtcctcactacaacataatt 55  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||    
T  10869383 agttaggtagtgataattagtgatgtccagtcctcactacaacataatt 10869431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 7410846 - 7410921
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    ||||||||  |||| ||||||||||||||||||| |||| |||||||||||||||||| | ||| |||||||||||    
T  7410846 ctaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 7410921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 19985017 - 19985096
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| | ||| |||||||||||| ||||||||||||||||| |||||||||||| | |||  ||||||||||||||    
T  19985017 ctaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaagtccaggttactaaagagtt 19985096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 40402104 - 40402030
Alignment:
Q  40 tcactacaacataatttctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    ||||||||||||  |  |||||| | ||||| |||||||||||||||||||| || |||||||||||||||||||    
T  40402104 tcactacaacattgtgactaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggta 40402030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 30786292 - 30786363
Alignment:
Q  60 aatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatat-ccctgttactaaa 130  Q
    ||||| ||||| ||||||| ||| |||||||||||||||||| |||||||||||| || || ||||||||||    
T  30786292 aatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaatgccttgttactaaa 30786363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 18191927 - 18191886
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacattt 98  Q
    |||||| | ||||| |||||||||||||||||||||||||||    
T  18191927 ctaaattaagaaaaatgttactaattaaatttagtaacattt 18191886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 15971089 - 15971129
Alignment:
Q  166 aaaatttggtatccgattcaagaaacgaataattcgagggg 206  Q
    |||||||||||| ||||||||||| ||| ||||||||||||    
T  15971089 aaaatttggtattcgattcaagaatcgactaattcgagggg 15971129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 23264574 - 23264480
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggt-atatccctgttactaaagagttacaggaacactttat 150  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||| | ||| || |||||||    
T  23264574 ctaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaaaatccgtgttactaaagagcttcagcaaaactttat 23264480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 16734827 - 16734902
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||||    
T  16734827 ctaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaag 16734902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 29667984 - 29667936
Alignment:
Q  66 gaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29667984 gaaaaatgttactaattaaatttagtaacatttgaacaattgttaggta 29667936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 10935859 - 10935802
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||||||||| |||||||||||| ||  ||||||||||||||||||||||||||    
T  10935859 ctaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggta 10935802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 15361737 - 15361794
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  15361737 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggta 15361794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 9631217 - 9631154
Alignment:
Q  73 gttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||||||||||||||||||||||||||||| |||  ||||||||||| ||||||    
T  9631217 gttactaagtaaatttagtaacatttgaacaattgttaggcatagcccctgttactatagagtt 9631154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 11936845 - 11936770
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||| || | ||| |||||||||||    
T  11936845 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaag 11936770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 11948825 - 11948750
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||| || | ||| |||||||||||    
T  11948825 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaag 11948750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 12591855 - 12591934
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaagagtt 135  Q
    |||||||| ||||| ||||| |||||||||||||||||  | |||||||||||||||| | ||| |||||||||||||||    
T  12591855 ctaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaagagtt 12591934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 6684119 - 6684194
Alignment:
Q  60 aatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    ||||| ||||| |||||||||||||||||||||||| | |||| ||||||||||| | ||| |||||||||||||||    
T  6684119 aatcaagaaaaatgttactaattaaatttagtaacactcgaac-attgttaggtaaagtccatgttactaaagagtt 6684194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 14669424 - 14669345
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||| ||||||||||||||||| | |||| | ||| |||||||||||| | ||| |||||||||||||||    
T  14669424 ctaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaagagtt 14669345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 4485643 - 4485586
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| | ||| || ||||||||||||||||||| ||||||| ||||||||||||    
T  4485643 ctaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggta 4485586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 23904414 - 23904373
Alignment:
Q  73 gttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  23904414 gttactaaatcaatttagtaacatttgaacaattgttaggta 23904373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 17719801 - 17719722
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||| ||||||||||||| ||| | |||| | ||||||||||||| || | ||| |||||||||||||||    
T  17719801 ctaaatcaagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaagtccgtgttactaaagagtt 17719722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 15690460 - 15690514
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttag 111  Q
    |||||||| ||||| |||||||||||||||||||| ||| |  ||||||||||||    
T  15690460 ctaaatcaagaaaaatgttactaattaaatttagtgacactcaaacaattgttag 15690514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 34374848 - 34374894
Alignment:
Q  58 taaatcatgaaaattgttactaattaaatttagtaacatttgaacaa 104  Q
    ||||||| ||||| |||||||||||| |||| |||||||||||||||    
T  34374848 taaatcaagaaaaatgttactaattatattttgtaacatttgaacaa 34374894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 26707881 - 26707958
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagag 133  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||    
T  26707881 ctaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtctctgttactaaagag 26707958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 16457409 - 16457352
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  16457409 ctaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggta 16457352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 2943291 - 2943236
Alignment:
Q  58 taaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggt 113  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||    
T  2943291 taaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggt 2943236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 5498500 - 5498579
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatcc-ctgttactaaagagtt 135  Q
    |||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||| | ||  |||||||||||||||    
T  5498500 ctaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggtaaaacctatgttactaaagagtt 5498579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 13846014 - 13846089
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||| | ||| |||||||||||    
T  13846014 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 13846089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 2550188 - 2550245
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  2550188 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggta 2550245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 9633510 - 9633441
Alignment:
Q  67 aaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||||| |  ||||||||||||||||||    
T  9633510 aaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaagagtt 9633441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 1628025 - 1627946
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||| | |||||||||||||||||||||| |||||||||||||| ||| | ||| |||||| ||||||||    
T  1628025 ctaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagtccgtgttacaaaagagtt 1627946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 7407832 - 7407757
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| | ||||||||||||||||| |||| |||||||||||||||||| | ||| |||||||||||    
T  7407832 ctaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 7407757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 1654598 - 1654651
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgtta 110  Q
    |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||    
T  1654598 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgtta 1654651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 27259523 - 27259474
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaatt 106  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||||    
T  27259523 ctaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 26735681 - 26735733
Alignment:
Q  82 taaatttagtaacatttgaacaattgttaggt-atatccctgttactaaagag 133  Q
    |||||||||||||||||||||||||||||||| | |||| |||||||||||||    
T  26735681 taaatttagtaacatttgaacaattgttaggtaaaatccatgttactaaagag 26735733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 1613291 - 1613217
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaa 130  Q
    |||||||| ||||| ||||||||| |||||||||||||| |||| ||||| ||||||| |  |||||||||||||    
T  1613291 ctaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttactaaa 1613217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 36035311 - 36035368
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| |  ||||||||||||||||||||| ||| ||||||||||||||    
T  36035311 ctaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggta 36035368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 35083000 - 35083052
Alignment:
Q  59 aaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttag 111  Q
    |||||| ||||| ||||| ||| |||||||||||| |||||||||||||||||    
T  35083000 aaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttag 35083052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 27713501 - 27713462
Alignment:
Q  73 gttactaattaaatttagtaacatttgaacaattgttagg 112  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  27713501 gttactaattaaatttagtaacatttaaataattgttagg 27713462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 3399644 - 3399701
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3399644 ctaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggta 3399701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 12189974 - 12190053
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaagagtt 135  Q
    |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  12189974 ctaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaaagcccgtgttactaaagagtt 12190053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 16222800 - 16222879
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaagagtt 135  Q
    |||||||| ||||| |||||||||| ||||||||||||| ||||| |||||||||||| | ||| |||||||||||||||    
T  16222800 ctaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttactaaagagtt 16222879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 5911742 - 5911685
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  5911742 ctaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggta 5911685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 28636925 - 28636982
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  28636925 ctaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggta 28636982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 897477 - 897553
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccctgttactaaagag 133  Q
    |||||| | ||||| |||| ||||||||||||||||||| ||||||||||||||||||  | | |||||||||||||    
T  897477 ctaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggtaagttcatgttactaaagag 897553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 15204616 - 15204673
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| |||| |||| |||||||||||||| ||||||||||||||||||    
T  15204616 ctaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggta 15204673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 15214349 - 15214406
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| | |||||||||||||||||||| ||||||||||||||| ||||    
T  15214349 ctaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgttgggta 15214406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 1843983 - 1844031
Alignment:
Q  66 gaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  1843983 gaaaaatgttactgattgaatttagtaacatttgaacaattgttaggta 1844031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 13208643 - 13208709
Alignment:
Q  66 gaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    ||||| ||||||||||||||||||||| || |||||| ||||||||||| | ||| |||||||||||    
T  13208643 gaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaaacccgtgttactaaag 13208709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 37097418 - 37097371
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaa 104  Q
    |||||||| ||||| ||||||| || ||||||||||||||||||||||    
T  37097418 ctaaatcaagaaaaatgttactgataaaatttagtaacatttgaacaa 37097371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 39368718 - 39368663
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttagg 112  Q
    |||||||| ||||| |||||||||||||| ||||| ||||||  ||||||||||||    
T  39368718 ctaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttagg 39368663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 51758775 - 51758832
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||| ||||||||||||| |||| | |||||||| |||||||    
T  51758775 ctaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggta 51758832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 11017479 - 11017573
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagttacaggaacactttat 150  Q
    |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |||||||||| || | ||| ||||||||||    
T  11017479 ctaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagtccgtgttactaaaaagcttcagtaacactttat 11017573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 41573415 - 41573489
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaa 130  Q
    |||||||| ||||| |||||||||||||||||||||||| || ||||||||||||||| | ||| ||||||||||    
T  41573415 ctaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaaaccccgtgttactaaa 41573489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 24479174 - 24479231
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| || || ||||||||||||||||||||||||||||||||||| |||||||    
T  24479174 ctaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggta 24479231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 7718207 - 7718286
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||| | ||||||||||||||||||||||  |||||||||||||| || | ||| |||||||||||||||    
T  7718207 ctaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgttactaaagagtt 7718286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 30267025 - 30267104
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaagagtt 135  Q
    |||||||| ||||| ||||| ||||||||||||||||||  ||||||||||||||||| | ||| |||||| ||||||||    
T  30267025 ctaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagagtt 30267104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 31342794 - 31342719
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||| || | ||| |||||||||||    
T  31342794 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaag 31342719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 15513690 - 15513746
Alignment:
Q  58 taaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    ||||||| ||||| |||||||| |||||||| |||||| ||||||||||||||||||    
T  15513690 taaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggta 15513746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 40016614 - 40016670
Alignment:
Q  58 taaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    ||||||| | ||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  40016614 taaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggta 40016670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 44920989 - 44921058
Alignment:
Q  67 aaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatc-cctgttactaaagagtt 135  Q
    |||| ||||||||||||||||||||||||  | ||||||||||||||| | | | |||||||||||||||    
T  44920989 aaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagctcgtgttactaaagagtt 44921058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 7702461 - 7702508
Alignment:
Q  67 aaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||| ||||| |||||||| ||||||||||||| ||||||||||||||    
T  7702461 aaaaatgttattaattaaaattagtaacatttgtacaattgttaggta 7702508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 22966564 - 22966623
Alignment:
Q  74 ttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaaga 132  Q
    |||||||| ||||||||| |||||| ||||||||||||||| |  |||||||||||||||    
T  22966564 ttactaatgaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaaga 22966623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 6801908 - 6801829
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    ||||||||  |||| |||||||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||||    
T  6801908 ctaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaagcccctgttactaaagagtt 6801829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 25638829 - 25638904
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||| | ||| |||||||||||    
T  25638829 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaag 25638904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 28249153 - 28249078
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||| | ||| |||||||||||    
T  28249153 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 28249078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 45356190 - 45356115
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||| | ||| |||||||||||    
T  45356190 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 45356115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 5651023 - 5650966
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  5651023 ctaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggta 5650966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 6403615 - 6403672
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  6403615 ctaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggta 6403672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 29345453 - 29345510
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||    
T  29345453 ctaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggta 29345510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 5000705 - 5000757
Alignment:
Q  61 atcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggt 113  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  5000705 atcatcaaaattgttactaattaaatttagtaacatttgagcaatagttaggt 5000757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 17634549 - 17634473
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaaga 132  Q
    |||||||| ||||| |||||||||||||||||| ||||| ||||||||||| |||||| | ||| ||||||||||||    
T  17634549 ctaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaaga 17634473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 25637666 - 25637742
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaaga 132  Q
    |||||| | ||||| ||||||||||||||||||| |||| | |||||||||||||||| | ||| ||||||||||||    
T  25637666 ctaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaagcccgtgttactaaaga 25637742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 29553653 - 29553705
Alignment:
Q  59 aaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttag 111  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  29553653 aaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttag 29553705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 31347373 - 31347425
Alignment:
Q  59 aaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttag 111  Q
    |||||| ||||| || |||||||||||||||||||||||||| ||||||||||    
T  31347373 aaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttag 31347425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 19369988 - 19369909
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||| ||||||||||||||||| | |||| | ||||||||||||| || | ||| |||||||||||||||    
T  19369988 ctaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagtt 19369909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 19448470 - 19448549
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||| ||||||||||||||||| | |||| | ||||||||||||| || | ||| |||||||||||||||    
T  19448470 ctaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagtt 19448549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 19532606 - 19532527
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||| ||||||||||||||||| | |||| | ||||||||||||| || | ||| |||||||||||||||    
T  19532606 ctaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagtt 19532527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 5528765 - 5528844
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||| ||||||||||||||||||| |||| |  |||||||||||| || | ||  |||||||||||||||    
T  5528765 ctaaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgttagataaagtctgtgttactaaagagtt 5528844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 6223439 - 6223502
Alignment:
Q  73 gttactaattaaatttagtaacatttgaacaattgttaggtatatc-cctgttactaaagagtt 135  Q
    |||||| |||||||||||||||||||| | |||||||||||| | | | |||||||||||||||    
T  6223439 gttactgattaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagagtt 6223502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 14997643 - 14997720
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaagag 133  Q
    |||| ||| ||||| |||||||  ||||| ||||||||||||| | |||||||||||| | ||| |||||||||||||    
T  14997643 ctaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaaacccatgttactaaagag 14997720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 9242562 - 9242483
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| || | ||| |||||||||||||||    
T  9242562 ctaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaagtccatgttactaaagagtt 9242483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 26608615 - 26608540
Alignment:
Q  59 aaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaagag 133  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||||||||||| || | ||| |||||||||||||    
T  26608615 aaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaagcccatgttactaaagag 26608540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 30089757 - 30089834
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaagag 133  Q
    |||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||| | | ||| |||||||||||||    
T  30089757 ctaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccatgttactaaagag 30089834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 26225056 - 26224977
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatcc-ctgttactaaagagtt 135  Q
    |||||||| ||||| || ||||||||||||||||||||| |||||||||| ||||||| | ||  |||||||||||||||    
T  26225056 ctaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaagccggtgttactaaagagtt 26224977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 4685481 - 4685424
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||| ||||||||||||| |||| ||||||||||||||||||    
T  4685481 ctaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggta 4685424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 20277438 - 20277361
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatc-cctgttactaaagag 133  Q
    ||||||||  |||| | ||| ||||||||||||||||||||| ||||||||||||||| | | |||||||||||||||    
T  20277438 ctaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaagag 20277361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 26205493 - 26205436
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| |||||||||||||||||||||||| ||||| ||||| ||||||    
T  26205493 ctaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggta 26205436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 16086510 - 16086566
Alignment:
Q  58 taaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||  |||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  16086510 taaatcagaaaaactgttactaattaaatttaataacatttgaataattgttaggta 16086566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 26619181 - 26619106
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatcc-ctgttactaaaga 132  Q
    |||||||| ||||| ||||||| |||||||||| ||||||||||||||||| |||||| ||||  ||||||||||||    
T  26619181 ctaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattg-taggtaaatcctatgttactaaaga 26619106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 16170303 - 16170350
Alignment:
Q  67 aaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||| |||||||||||||||||||||||| || |||||||||||||||    
T  16170303 aaaagtgttactaattaaatttagtaacacttaaacaattgttaggta 16170350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 10022146 - 10022203
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    ||||||||  |||| ||||||||||||| ||||||||||  |||||||||||||||||    
T  10022146 ctaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggta 10022203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 26621169 - 26621115
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttag 111  Q
    |||||| | ||||| ||||||| ||||||||||| ||||||| ||||||||||||    
T  26621169 ctaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttag 26621115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 3374325 - 3374374
Alignment:
Q  59 aaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgt 108  Q
    |||||| ||||| ||||| | |||||||| ||||||||||||||||||||    
T  3374325 aaatcaagaaaaatgttattgattaaattaagtaacatttgaacaattgt 3374374  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 4904218 - 4904161
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  4904218 ctaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggta 4904161  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 24559073 - 24559016
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  24559073 ctaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggta 24559016  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 48464072 - 48464118
Alignment:
Q  67 aaaattgttactaattaaatttagtaacatttgaacaattgttaggt 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  48464072 aaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 21539349 - 21539273
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccctgttactaaagag 133  Q
    |||||||| | ||| ||||||| ||||||||||||||||||| |||||||||||| ||  ||| |||||||||||||    
T  21539349 ctaaatcaaggaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtccttgttactaaagag 21539273  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 43600289 - 43600364
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaag 131  Q
    |||||||| ||||| ||||||||||||||||||| || | |||||||||||||||||| | ||| |||||||||||    
T  43600289 ctaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaag 43600364  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 47066112 - 47066033
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaagagtt 135  Q
    |||||||| ||||| ||||| ||||||||||||||||||  ||||||||||||||||| | ||| |||||| ||||||||    
T  47066112 ctaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagagtt 47066033  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 1685030 - 1684951
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||| ||||||||||||||||| | |||| | ||||||||||||| || | ||| |||||||||||||||    
T  1685030 ctaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagtt 1684951  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 4881147 - 4881072
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaag 131  Q
    |||||||| ||||| ||||||| |||||||||||||| ||||| | |||||||||||| | ||| |||||||||||    
T  4881147 ctaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaaagtccgtgttactaaag 4881072  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 53300374 - 53300452
Alignment:
Q  58 taaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccc-tgttactaaagagtt 135  Q
    ||||||| ||||| ||||| ||||||||||||||||||  | ||||||||||||||| | ||| |||||| ||||||||    
T  53300374 taaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggtaaagcccgtgttaccaaagagtt 53300452  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 26075271 - 26075222
Alignment:
Q  61 atcatgaaaattgttactaattaaatttagtaacatttgaacaattgtta 110  Q
    |||| ||||||||||||||| ||||||| |||||||| ||||||||||||    
T  26075271 atcaagaaaattgttactaagtaaattttgtaacattcgaacaattgtta 26075222  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 45641677 - 45641723
Alignment:
Q  61 atcatgaaaattgttactaattaaatttagtaacatttgaacaattg 107  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||    
T  45641677 atcatgaaaaatgttactaattatatctagtaacatttgcacaattg 45641723  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 21317485 - 21317517
Alignment:
Q  82 taaatttagtaacatttgaacaattgttaggta 114  Q
    ||||||||||||||||| |||||||||||||||    
T  21317485 taaatttagtaacatttcaacaattgttaggta 21317517  T

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Target: scaffold0576 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 6721 - 6778
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 114  Q
    |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  6721 ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggta 6778  T

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Target: scaffold0684 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 825 - 746
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||||||||||||||||||||| | |||| | ||||||||||||| || | ||| |||||||||||||||    
T  825 ctaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagagtt 746  T

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Target: scaffold0069 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 40776 - 40697
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtata-tccctgttactaaagagtt 135  Q
    |||||||| ||||||||||||||||||||||| | |||| | ||||||||||||| || | ||| |||||||||||||||    
T  40776 ctaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagagtt 40697  T

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Target: scaffold0002 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 446361 - 446306
Alignment:
Q  57 ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttagg 112  Q
    |||||||||  |||||||||| |||||||||| |||||||||||||||||||||||    
T  446361 ctaaatcatacaaattgttaccaattaaatttggtaacatttgaacaattgttagg 446306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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