View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4575-Insertion-4 (Length: 549)
Name: NF4575-Insertion-4
Description: NF4575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4575-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 7 - 549
Target Start/End: Complemental strand, 25258999 - 25258456
Alignment:
| Q |
7 |
agttttatacgcaatgaggaacattagttcaatgctgctcacaatcttgttaaatggtttggtttaccgctgtccagtaacatcagacacagttgcaagg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25258999 |
agttttatacgcaatgaggaacattagttcaatgctgctcacaatcttgttacatggtttggtttaccgttgtccagtaacatcagacacagttgcaagg |
25258900 |
T |
|
| Q |
107 |
tacgagggttggatgtttcatgggtcggggctaatgatgtcagccgcgaggttgcagcaaagagtggccgcagagatgagcgaagcagagccggggatgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25258899 |
tacgagggttggatgtttcatgggtcggggctaatgatgtcagccgcgaggttgcagcaaagagtggccgcagagatgagcgaagcagagccggggatgt |
25258800 |
T |
|
| Q |
207 |
tgttgtacgaatttaggcacgcgagggcatcggtagaggagttaagaagcgaattggagaggaatgtgtcgtcgcaggttgttcaatgggaaatggaaga |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25258799 |
tgttgtacgaatttaggcacgcgagggcatcggtagaggagctaagaggcgaattggagaggaatgtgtcgtcgcaggttgttcaatgggaaatggaaga |
25258700 |
T |
|
| Q |
307 |
tggtttgagggagagagtggagtgtgttagaatgtgctttggtgtgcttaaatctggtgctgataatattgtttctcagcttgatgatttcttcgatgaa |
406 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25258699 |
tggtttgagagagagagtggagtgtgttagaatgtgctttggtgtgcttaaatctggtgctgataatattgtttctcagcttgatgatttcttcgatgaa |
25258600 |
T |
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| Q |
407 |
attgtagaaggtaggaagaagcttttggatttttgtagtcataggtaatttaattaccgatg-tttaaattgtggtcgctattgtgcgaaaaaacacaat |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | |||||||| ||||||||||| |
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| T |
25258599 |
attgtagaaggtaggaagaagcttttggatttttgtagtcataggtaatttaattgccgatgttttaaattgtggtcacgattgtgcggaaaaacacaat |
25258500 |
T |
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| Q |
506 |
gcaattgatgtaactcatagnnnnnnnaaatgaaaaatcgaaag |
549 |
Q |
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| T |
25258499 |
gcaattgatgtaactcatagtttttttaaatgaaaaatcgaaag |
25258456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 7 - 549
Target Start/End: Complemental strand, 25322789 - 25322246
Alignment:
| Q |
7 |
agttttatacgcaatgaggaacattagttcaatgctgctcacaatcttgttaaatggtttggtttaccgctgtccagtaacatcagacacagttgcaagg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25322789 |
agttttatacgcaatgaggaacattagttcaatgctgctcacaatcttgttacatggtttggtttaccgttgtccagtaacatcagacacagttgcaagg |
25322690 |
T |
|
| Q |
107 |
tacgagggttggatgtttcatgggtcggggctaatgatgtcagccgcgaggttgcagcaaagagtggccgcagagatgagcgaagcagagccggggatgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25322689 |
tacgagggttggatgtttcatgggtcggggctaatgatgtcagccgcgaggttgcagcaaagagtggccgcagagatgagcgaagcagagccggggatgt |
25322590 |
T |
|
| Q |
207 |
tgttgtacgaatttaggcacgcgagggcatcggtagaggagttaagaagcgaattggagaggaatgtgtcgtcgcaggttgttcaatgggaaatggaaga |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25322589 |
tgttgtacgaatttaggcacgcgagggcatcggtagaggagctaagaggcgaattggagaggaatgtgtcgtcgcaggttgttcaatgggaaatggaaga |
25322490 |
T |
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| Q |
307 |
tggtttgagggagagagtggagtgtgttagaatgtgctttggtgtgcttaaatctggtgctgataatattgtttctcagcttgatgatttcttcgatgaa |
406 |
Q |
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| T |
25322489 |
tggtttgagagagagagtggagtgtgttagaatgtgctttggtgtgcttaaatctggtgctgataatattgtttctcagcttgatgatttcttcgatgaa |
25322390 |
T |
|
| Q |
407 |
attgtagaaggtaggaagaagcttttggatttttgtagtcataggtaatttaattaccgatg-tttaaattgtggtcgctattgtgcgaaaaaacacaat |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | |||||||| ||||||||||| |
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| T |
25322389 |
attgtagaaggtaggaagaagcttttggatttttgtagtcataggtaatttaattgccgatgttttaaattgtggtcacgattgtgcggaaaaacacaat |
25322290 |
T |
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| Q |
506 |
gcaattgatgtaactcatagnnnnnnnaaatgaaaaatcgaaag |
549 |
Q |
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| T |
25322289 |
gcaattgatgtaactcatagtttttttaaatgaaaaatcgaaag |
25322246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 344 - 452
Target Start/End: Complemental strand, 33136911 - 33136803
Alignment:
| Q |
344 |
tttggtgtgcttaaatctggtgctgataatattgtttctcagcttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttggatttttgta |
443 |
Q |
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|||||||| |||| ||||||||||||||||||| || |||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||| |
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| T |
33136911 |
tttggtgttcttagatctggtgctgataatattattgctcaacttgatgatttctttgatgagattgttgaaggaaggaagaagcttttggacttttgta |
33136812 |
T |
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| Q |
444 |
gtcataggt |
452 |
Q |
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| T |
33136811 |
gtcataggt |
33136803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 366 - 474
Target Start/End: Complemental strand, 16706302 - 16706194
Alignment:
| Q |
366 |
ctgataatattgtttctcagcttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttggatttttgtagtcataggtaatttaattaccg |
465 |
Q |
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||||||||||||||| | |||||||||||||||| ||||||| ||| ||| |||| |||||||||||||||| ||| ||||||||||||||||||| |
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| T |
16706302 |
ctgataatattgtttatgagcttgatgatttctttgatgaaactgtggaaactagggttaagcttttggatttttttaggcataggtaatttaattacca |
16706203 |
T |
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| Q |
466 |
atgtttaaa |
474 |
Q |
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| T |
16706202 |
aagtttaaa |
16706194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 16706683 - 16706622
Alignment:
| Q |
261 |
tggagaggaatgtgtcgtcgcaggttgttcaatgggaaatggaagatggtttgagggagaga |
322 |
Q |
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|||||| |||||||| || | |||| ||||||||||||||||||| |||||||||||||||| |
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| T |
16706683 |
tggagatgaatgtgttgttgaaggtcgttcaatgggaaatggaagttggtttgagggagaga |
16706622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 36866100 - 36866052
Alignment:
| Q |
387 |
ttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttgga |
435 |
Q |
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| T |
36866100 |
ttgatgatttctttgatgaaattgttgaaggaaggaagaagcttttgga |
36866052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 641466 - 641420
Alignment:
| Q |
386 |
cttgatgatttcttcgatgaaattgtagaaggtaggaagaagctttt |
432 |
Q |
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| T |
641466 |
cttgatgatttctttgatgaaatagttgaaggaaggaagaagctttt |
641420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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