View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4575_high_5 (Length: 317)

Name: NF4575_high_5
Description: NF4575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4575_high_5
NF4575_high_5
[»] chr6 (6 HSPs)
chr6 (15-295)||(20130361-20130641)
chr6 (15-295)||(22202229-22202509)
chr6 (127-245)||(27966248-27966366)
chr6 (124-245)||(24478580-24478701)
chr6 (137-245)||(2946938-2947046)
chr6 (245-292)||(20087950-20087997)
[»] chr4 (6 HSPs)
chr4 (15-245)||(31192717-31192946)
chr4 (122-245)||(8804183-8804306)
chr4 (122-245)||(19667259-19667382)
chr4 (120-239)||(1979399-1979518)
chr4 (245-291)||(16739237-16739283)
chr4 (121-185)||(4877211-4877275)
[»] chr2 (8 HSPs)
chr2 (15-245)||(38455613-38455842)
chr2 (15-245)||(35671302-35671531)
chr2 (122-242)||(13803932-13804052)
chr2 (122-245)||(27092531-27092654)
chr2 (138-245)||(19699181-19699288)
chr2 (166-245)||(20035622-20035701)
chr2 (124-245)||(8355847-8355968)
chr2 (120-245)||(10379829-10379954)
[»] chr7 (2 HSPs)
chr7 (122-245)||(6112908-6113031)
chr7 (120-245)||(43017576-43017701)
[»] chr3 (6 HSPs)
chr3 (120-229)||(11428371-11428480)
chr3 (139-245)||(9008529-9008635)
chr3 (133-243)||(48574054-48574164)
chr3 (172-245)||(39295754-39295827)
chr3 (245-295)||(8820876-8820926)
chr3 (120-245)||(33818652-33818777)
[»] chr5 (2 HSPs)
chr5 (120-243)||(31129505-31129628)
chr5 (248-293)||(21485097-21485142)
[»] chr1 (2 HSPs)
chr1 (245-295)||(27120976-27121026)
chr1 (137-245)||(6192135-6192243)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 20130641 - 20130361
Alignment:
Q  15 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggnnn 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  20130641 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggaaa 20130542  T
Q  115 nnnnngatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 214  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20130541 aaaaagatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 20130442  T
Q  215 caactgatgtgaaaaatcctttctgtagtagcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20130441 caactgatgtgaaaaatcctttctgtagtagcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 20130361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 22202229 - 22202509
Alignment:
Q  15 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggnnn 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  22202229 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggaaa 22202328  T
Q  115 nnnnngatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 214  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22202329 aaaaagatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 22202428  T
Q  215 caactgatgtgaaaaatcctttctgtagtagcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22202429 caactgatgtgaaaaatcctttctgtagtagcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 22202509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 27966248 - 27966366
Alignment:
Q  127 catcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtga 226  Q
    |||||||||  || |||||||||| | |||| |||| | |||||||||||| ||||||| ||||||||||||||  ||||||  ||||||||||||||||    
T  27966248 catcagttcgtacatgatgtgaaatggtgtgcacattccacatcatatcaccttacatcggttgccacctgatgtgaaaagtagttttcaactgatgtga 27966347  T
Q  227 aaaatcctttctgtagtag 245  Q
    ||| |  ||||||||||||    
T  27966348 aaacttatttctgtagtag 27966366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 24478580 - 24478701
Alignment:
Q  124 tcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatg 223  Q
    ||||||||||||  ||||||||||||| || ||| |||| | |||||||  ||| ||||||||||||||| ||||||  ||||||  |||  ||||||||    
T  24478580 tcacatcagttcgtacctgatgtgaaatgacgtgcacattccacatcatgacaccttacatcagttgccatctgatgtgaaaagtagtttctaactgatg 24478679  T
Q  224 tgaaaaatcctttctgtagtag 245  Q
    |||||| |  ||||||||||||    
T  24478680 tgaaaacttatttctgtagtag 24478701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 2947046 - 2946938
Alignment:
Q  137 aacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatccttt 236  Q
    |||||||||||||| |||||| || ||| |||||||||||| ||||||| || || | ||||||  |||| |  ||||||||| |||| ||||||| |||    
T  2947046 aacctgatgtgaaaggatgtggacttaccacatcatatcaccttacatcggtggcaaactgatgtgaaaaatcattttcaactaatgtaaaaaatcattt 2946947  T
Q  237 ctgtagtag 245  Q
    |||||||||    
T  2946946 ctgtagtag 2946938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 20087997 - 20087950
Alignment:
Q  245 gcttagcccagcttgatcgttcgggtcacgtgagctccactttcaaca 292  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  20087997 gcttagcccaacttaatcgttcggatcacgtgagctccactttcaaca 20087950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 31192717 - 31192946
Alignment:
Q  15 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggnnn 114  Q
    ||||||| |||||||||||||||| ||||||||||||| | |  ||||||||||||| | |   ||||||| ||||  |||||||||| ||||||||       
T  31192717 gtttaacttcagtgtctatcataaaactgatgtgaaaaacctattgttaaattttaatgcgaatgtaccacatcagcggaataaaggccagatgtggaaa 31192816  T
Q  115 nnnnngatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 214  Q
         ||||||||||||||||  |||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||||||| ||||    
T  31192817 agaa-gatttcacatcagttcgtacctgatgtgaaaagatgtgaacatactacatcatgacaccttacatcagttgccacctgatgcgaaaagtgctttt 31192915  T
Q  215 caactgatgtgaaaaatcctttctgtagtag 245  Q
    |||||||||||||||||||||||||||||||    
T  31192916 caactgatgtgaaaaatcctttctgtagtag 31192946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 122 - 245
Target Start/End: Original strand, 8804183 - 8804306
Alignment:
Q  122 tttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactga 221  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||||  |||||||||||    
T  8804183 tttcacatcagtttgtacctgatgtgaaaagatgcgaacatactacatcatgacaccttacatcagttgccacctgatgcaaaaagtacttttcaactga 8804282  T
Q  222 tgtgaaaaatcctttctgtagtag 245  Q
    ||||||||||| ||| ||||||||    
T  8804283 tgtgaaaaatcatttatgtagtag 8804306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 19667382 - 19667259
Alignment:
Q  122 tttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactga 221  Q
    |||||||||||||   |||||||||||||||||| | ||||||||||||||  ||| ||||||||||||||||||||||| ||||||| |||| || |||    
T  19667382 tttcacatcagtttgtacctgatgtgaaaagatgcggacatactacatcatgacaccttacatcagttgccacctgatgcgaaaagtgctttttaattga 19667283  T
Q  222 tgtgaaaaatcctttctgtagtag 245  Q
    ||||||||||| ||||||||||||    
T  19667282 tgtgaaaaatcatttctgtagtag 19667259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 1979518 - 1979399
Alignment:
Q  120 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 219  Q
    ||||| ||||||||| ||||| ||||||||| |||||| || ||| ||||||| |||| ||||||| |||| || | ||||  |||| |  |||||||||    
T  1979518 gattttacatcagttgaaacccgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaaccgatgtgaaaaatcattttcaact 1979419  T
Q  220 gatgtgaaaaatcctttctg 239  Q
    ||||||||||||| ||||||    
T  1979418 gatgtgaaaaatcatttctg 1979399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 16739283 - 16739237
Alignment:
Q  245 gcttagcccagcttgatcgttcgggtcacgtgagctccactttcaac 291  Q
    |||||||||||||||||||||| |||||| ||||||| || ||||||    
T  16739283 gcttagcccagcttgatcgttcaggtcacatgagctctaccttcaac 16739237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 4877211 - 4877275
Alignment:
Q  121 atttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatc 185  Q
    |||||||||||||   ||| |||||||||| |||||| || ||| |||||||||||| |||||||    
T  4877211 atttcacatcagtcgcaacgtgatgtgaaaggatgtggacttaccacatcatatcaccttacatc 4877275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 38455842 - 38455613
Alignment:
Q  15 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggnnn 114  Q
    ||||||| |||||||||||||||| ||||||||||||| | |  ||||||||||||||| |  |||||||| ||||  |||||||||| ||||||||       
T  38455842 gtttaacttcagtgtctatcataaaactgatgtgaaaaacctattgttaaattttaaagcgaacgtaccacatcagcggaataaaggccagatgtggaaa 38455743  T
Q  115 nnnnngatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 214  Q
         ||||||||||||||||  ||||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||| ||||||| ||||    
T  38455742 agaa-gatttcacatcagttcgtacctgatgtgaaaagatgtgaacataccacatcatgacaccttacatcagttgccacctgatgcgaaaagtgctttt 38455644  T
Q  215 caactgatgtgaaaaatcctttctgtagtag 245  Q
    |||||||||| ||||||||||||||||||||    
T  38455643 caactgatgtaaaaaatcctttctgtagtag 38455613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 35671531 - 35671302
Alignment:
Q  15 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggnnn 114  Q
    ||||||| |||||||||||||||| ||||||||||||| | |  |||||||||| || | |  |||||||| ||||| |||||||||| ||||||||       
T  35671531 gtttaacttcagtgtctatcataaaactgatgtgaaaaacctattgttaaatttgaaggcgaacgtaccacatcagtggaataaaggccagatgtggaaa 35671432  T
Q  115 nnnnngatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 214  Q
         ||||||||||||||||  ||||||||| ||||||||| ||||||| |||||||  ||| ||||||||||||||||||||||| ||||||| ||||    
T  35671431 agca-gatttcacatcagttcgtacctgatgtaaaaagatgtaaacataccacatcatgacaccttacatcagttgccacctgatgcgaaaagtgctttt 35671333  T
Q  215 caactgatgtgaaaaatcctttctgtagtag 245  Q
    |||||||||||||||||||||||||||||||    
T  35671332 caactgatgtgaaaaatcctttctgtagtag 35671302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 13804052 - 13803932
Alignment:
Q  122 tttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactga 221  Q
    ||||||||||| |   |||||||||||||||||| | ||||||||||||||  ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  13804052 tttcacatcagcttgtacctgatgtgaaaagatgcggacatactacatcatgacacgttacatcagttgccacctgatgcgaaaagtgtttttcaactga 13803953  T
Q  222 tgtgaaaaatcctttctgtag 242  Q
    ||||||||| | |||||||||    
T  13803952 tgtgaaaaaacatttctgtag 13803932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 27092654 - 27092531
Alignment:
Q  122 tttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactga 221  Q
    |||||||||||||   |||||||||||||||||| | ||||||||||||||  ||| ||| ||||||||||||||||| | || |||| |||||||||||    
T  27092654 tttcacatcagtttgtacctgatgtgaaaagatgcggacatactacatcatgacaccttatatcagttgccacctgatacgaatagtgcttttcaactga 27092555  T
Q  222 tgtgaaaaatcctttctgtagtag 245  Q
    | ||||||||| ||||||||||||    
T  27092554 tttgaaaaatcatttctgtagtag 27092531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 19699288 - 19699181
Alignment:
Q  138 acctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatcctttc 237  Q
    |||||||||||||||||| | ||||||||||||||  ||  ||| | ||||||||||||||||| ||||||| |||||||||||||||||||||| |||     
T  19699288 acctgatgtgaaaagatgcggacatactacatcatgacatcttagaacagttgccacctgatgcgaaaagtgcttttcaactgatgtgaaaaatcattta 19699189  T
Q  238 tgtagtag 245  Q
    ||||||||    
T  19699188 tgtagtag 19699181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 20035701 - 20035622
Alignment:
Q  166 acatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatcctttctgtagtag 245  Q
    |||||||  ||| ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||    
T  20035701 acatcatgacaccttacatcagttgccacctgatgcgaaaagtgcttttcaactgatgtaaaaaatcctttatgtagtag 20035622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 8355968 - 8355847
Alignment:
Q  124 tcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatg 223  Q
    ||||||||||||  ||||||||||||| |||||  |||||| |||||||||||||||||||| |  || ||||||||  ||||||  ||| |||||||||    
T  8355968 tcacatcagttcgtacctgatgtgaaatgatgttgacataccacatcatatcactttacatcggacgctacctgatgtgaaaagtactttccaactgatg 8355869  T
Q  224 tgaaaaatcctttctgtagtag 245  Q
    | |||| || ||||||||||||    
T  8355868 taaaaactcatttctgtagtag 8355847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 10379954 - 10379829
Alignment:
Q  120 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 219  Q
    ||||||||| ||||  | ||| || |||||| |||||| || ||| ||||||| |||||||||||| |||||||||||||| ||||| |  ||| |||||    
T  10379954 gatttcacaacagtctagacccgaggtgaaaggatgtggacttacgacatcatgtcactttacatcggttgccacctgatgtaaaaactcgtttccaact 10379855  T
Q  220 gatgtgaaaaatcctttctgtagtag 245  Q
    ||||| |||| ||| |||||||||||    
T  10379854 gatgtaaaaactccgttctgtagtag 10379829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 122 - 245
Target Start/End: Original strand, 6112908 - 6113031
Alignment:
Q  122 tttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactga 221  Q
    |||||||||||||   ||||||||||||||||||   ||||||||||||||  ||| |||||||||||||| |||||||| ||||||| |||||||||||    
T  6112908 tttcacatcagtttgtacctgatgtgaaaagatgcagacatactacatcatgacaccttacatcagttgccgcctgatgcgaaaagtgcttttcaactga 6113007  T
Q  222 tgtgaaaaatcctttctgtagtag 245  Q
    ||||||||||| ||||||||||||    
T  6113008 tgtgaaaaatcgtttctgtagtag 6113031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 43017701 - 43017576
Alignment:
Q  120 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 219  Q
    |||||||||||| |   |||||||||||||| |||||| || ||| |||||||||||| ||||||| ||| | | ||||||  |||| |  ||| |||||    
T  43017701 gatttcacatcaatcgcaacctgatgtgaaaggatgtggacttaccacatcatatcaccttacatcggttacaaactgatgtgaaaactcatttccaact 43017602  T
Q  220 gatgtgaaaaatcctttctgtagtag 245  Q
    ||| | ||||||| ||||||||||||    
T  43017601 gatataaaaaatcatttctgtagtag 43017576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 11428371 - 11428480
Alignment:
Q  120 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 219  Q
    ||||||||||| || |||||||||||| ||| |||||| || ||| |||||||||||| |||||||||||||||||||||  ||||| |  ||| |||||    
T  11428371 gatttcacatctgtccaaacctgatgtaaaaggatgtggacttaccacatcatatcaccttacatcagttgccacctgatttaaaaactcatttccaact 11428470  T
Q  220 gatgtgaaaa 229  Q
    ||||| ||||    
T  11428471 gatgtaaaaa 11428480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 9008635 - 9008529
Alignment:
Q  139 cctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatcctttct 238  Q
    |||||| ||||| |||||| || ||  |||||||||||||||||||| ||||| | ||||||| |||| |  |||||||||||||| ||||||| |||||    
T  9008635 cctgatctgaaaggatgtggacttagcacatcatatcactttacatcggttgcaaactgatgcgaaaaatcattttcaactgatgtaaaaaatcatttct 9008536  T
Q  239 gtagtag 245  Q
     ||||||    
T  9008535 atagtag 9008529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 48574054 - 48574164
Alignment:
Q  133 ttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatc 232  Q
    |||||| ||||||||||| | |||| || ||| |||||||  ||| ||||||||||||||||||||||  |||| |  |||||||||||||| |||| ||    
T  48574054 ttcaaaactgatgtgaaagggtgtggacttaccacatcatgacaccttacatcagttgccacctgatgtgaaaactcattttcaactgatgtaaaaactc 48574153  T
Q  233 ctttctgtagt 243  Q
    | || ||||||    
T  48574154 cattttgtagt 48574164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 39295754 - 39295827
Alignment:
Q  172 tatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatcctttctgtagtag 245  Q
    |||||||||||||| | ||||||||||||  ||||||  ||| |||||||||| |||| || ||||||||||||    
T  39295754 tatcactttacatcggatgccacctgatgtgaaaagtactttccaactgatgtaaaaactcatttctgtagtag 39295827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 8820926 - 8820876
Alignment:
Q  245 gcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 295  Q
    ||||||| ||||||||| |||| ||||| |||||||||||| |||||||||    
T  8820926 gcttagctcagcttgattgttcaggtcatgtgagctccactatcaacatca 8820876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 245
Target Start/End: Original strand, 33818652 - 33818777
Alignment:
Q  120 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 219  Q
    |||||| ||||||||   |||||| |||||| |||||| || ||| |||||||  ||| ||||||||||||| | ||||||  |||| |  ||| |||||    
T  33818652 gatttcccatcagttgcgacctgaagtgaaaggatgtggacttaccacatcatgacaccttacatcagttgcaaactgatgtgaaaaatcatttccaact 33818751  T
Q  220 gatgtgaaaaatcctttctgtagtag 245  Q
    ||||| ||||||  |||||| |||||    
T  33818752 gatgtaaaaaataatttctgcagtag 33818777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 31129628 - 31129505
Alignment:
Q  120 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 219  Q
    |||||||||||||| || | |||||| |||| | |||| || ||| |||||||  ||| ||||||||||||||||||||||  |||| |  |||||||||    
T  31129628 gatttcacatcagtccacaactgatgggaaagggtgtggacttaccacatcatgacaccttacatcagttgccacctgatgtgaaaactcattttcaact 31129529  T
Q  220 gatgtgaaaaatcctttctgtagt 243  Q
    ||||| |||| ||| |||| ||||    
T  31129528 gatgtaaaaactccattctatagt 31129505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 21485142 - 21485097
Alignment:
Q  248 tagcccagcttgatcgttcgggtcacgtgagctccactttcaacat 293  Q
    |||| |||||||||||||| |||||| |||||||||| ||||||||    
T  21485142 tagctcagcttgatcgttcaggtcacatgagctccacattcaacat 21485097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 27120976 - 27121026
Alignment:
Q  245 gcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 295  Q
    ||||||| |||||||||||||| |||||||||||||||| | |||||||||    
T  27120976 gcttagctcagcttgatcgttcaggtcacgtgagctccattgtcaacatca 27121026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 6192135 - 6192243
Alignment:
Q  137 aacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatccttt 236  Q
    |||||||||||||||| |||| || ||| |||||||  ||| ||||||| || |  | ||||||  |||| |  |||||||||||||| |||| ||| ||    
T  6192135 aacctgatgtgaaaaggtgtggacttaccacatcatgacaccttacatcggtggtaaactgatgtgaaaactcattttcaactgatgtaaaaactccatt 6192234  T
Q  237 ctgtagtag 245  Q
    |||||||||    
T  6192235 ctgtagtag 6192243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University