View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4575_low_1 (Length: 454)
Name: NF4575_low_1
Description: NF4575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4575_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 41379243 - 41379029
Alignment:
| Q |
20 |
tccacgacaacggagacgtaataaactaaaaataccaaacccactnnnnnnnnnnttaaagagcaaagaaactcacacgttaacttctgcaaaattatga |
119 |
Q |
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| T |
41379243 |
tccacgacaacggagacgtaataaactaaaaataccaaacccactaaaaaaaa--ttaaagagcaaagaaacttacacgttaacttctgtaaaattatga |
41379146 |
T |
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| Q |
120 |
tgaattatcgtgattttaatggattcatcacaataccaaacatgcactaattgatgttgaaaaataaaaatacaatgtgagtttaaactcgttctctatc |
219 |
Q |
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| T |
41379145 |
tgaattatcgtgattttaatgaatccatcacaataccaaacatgcactaattgatgttgaaaaataaaaatataatgtgagtttaaacttgttctctatc |
41379046 |
T |
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| Q |
220 |
atattaatgtttttgtc |
236 |
Q |
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| T |
41379045 |
gtattaatgtttttgtc |
41379029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 332 - 440
Target Start/End: Complemental strand, 41378966 - 41378858
Alignment:
| Q |
332 |
atgtttttctcatatctctttaaaactttatattgaattgaaggactatgtaattttttcatattaaattatttaagataaaatattggtctcattagaa |
431 |
Q |
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| T |
41378966 |
atgtttttctcatatctctttaaaactttatattgaattgaaggactatgtaattttttcatattaaattatttaagataaaatgttggtctcattagaa |
41378867 |
T |
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| Q |
432 |
agtttcccc |
440 |
Q |
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| T |
41378866 |
agtttcccc |
41378858 |
T |
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