View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4575_low_2 (Length: 427)
Name: NF4575_low_2
Description: NF4575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4575_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 25259408 - 25258994
Alignment:
| Q |
9 |
attatactagaccatacttaacgaagaggaactgttaactagaattgtatcttgattttttcaaaataaaacttgannnnnnn---caatgttaaattag |
105 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25259408 |
attatactagaccatacttaacaaagaggaactattaactagaattgtatcttgattttttcaaaataaaacttgataatttttttcaatgttaaattag |
25259309 |
T |
|
| Q |
106 |
atatggtttctaaaggactttggaatttagttgttattagaatctaatattttgaataaactcacagtattaaaagtatcattcgnnnnnnngttt---- |
201 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25259308 |
atatagtttctaaaggactttggaatttagttgttattagaatctaatattttgaataaactcacagtattaaaagtatcattcgtttttttgttttttg |
25259209 |
T |
|
| Q |
202 |
----gtaccctgttggaaactattcaaagttctgaagtttcttttgtttttcaggttcttaggggcatatcacggtgtcgaagagaagctatgggattgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25259208 |
gtttgtaccctgttggaaactattcaaagttctgaagtttcttttgtttttcaggttcttaggggcatatcacggtgtcgaagagaagctatgggattgg |
25259109 |
T |
|
| Q |
298 |
aagaagaaaaccgttcattgatggaaacaagagtccaactactttctctgtgtttcgacgaaagagtatccgtcgaatcaaagctaaacggtttcaacgg |
397 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25259108 |
aagaagaaaaccgtgcattgatggaaacaagagtccaactactttctctgtgtttcgacgaaagagtatccgtcgaatcaaagctaaacggtttcaacgg |
25259009 |
T |
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| Q |
398 |
gttcagaggagtttt |
412 |
Q |
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||||||||||||||| |
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| T |
25259008 |
gttcagaggagtttt |
25258994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 25323198 - 25322784
Alignment:
| Q |
9 |
attatactagaccatacttaacgaagaggaactgttaactagaattgtatcttgattttttcaaaataaaacttgannnnnnn---caatgttaaattag |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25323198 |
attatactagaccatacttaacaaagaggaactattaactagaattgtatcttgattttttcaaaataaaacttgataatttttttcaatgttaaattag |
25323099 |
T |
|
| Q |
106 |
atatggtttctaaaggactttggaatttagttgttattagaatctaatattttgaataaactcacagtattaaaagtatcattcgnnnnnnngttt---- |
201 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25323098 |
atatagtttctaaaggactttggaatttagttgttattagaatctaatattttgaataaactcacagtattaaaagtatcattcgtttttttgttttttg |
25322999 |
T |
|
| Q |
202 |
----gtaccctgttggaaactattcaaagttctgaagtttcttttgtttttcaggttcttaggggcatatcacggtgtcgaagagaagctatgggattgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25322998 |
gtttgtaccctgttggaaactattcaaagttctgaagtttcttttgtttttcaggttcttaggggcatatcacggtgtcgaagagaagctatgggattgg |
25322899 |
T |
|
| Q |
298 |
aagaagaaaaccgttcattgatggaaacaagagtccaactactttctctgtgtttcgacgaaagagtatccgtcgaatcaaagctaaacggtttcaacgg |
397 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25322898 |
aagaagaaaaccgtgcattgatggaaacaagagtccaactactttctctgtgtttcgacgaaagagtatccgtcgaatcaaagctaaacggtttcaacgg |
25322799 |
T |
|
| Q |
398 |
gttcagaggagtttt |
412 |
Q |
| |
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||||||||||||||| |
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| T |
25322798 |
gttcagaggagtttt |
25322784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 33137301 - 33137261
Alignment:
| Q |
372 |
gaatcaaagctaaacggtttcaacgggttcagaggagtttt |
412 |
Q |
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|||||||| ||||||||||||||||| |||||||| ||||| |
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| T |
33137301 |
gaatcaaaactaaacggtttcaacggtttcagaggtgtttt |
33137261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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