View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4575_low_4 (Length: 342)
Name: NF4575_low_4
Description: NF4575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4575_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 10752432 - 10752177
Alignment:
| Q |
1 |
cataggtccacgtgctcccccttcctaatccatgttagggctacaactcaaagcagttcaatttcacctattatattaatttatttatttattcataggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10752432 |
cataggtccacgtgctcccccttcctaatccatgttagggctacaactcaaagcagttcaatttcacctattagattaatttatttatttattcataggt |
10752333 |
T |
|
| Q |
101 |
acatgattctacttgcttgaaacctaaaactaaggatggatgcattctggagtatgcaaattcaaaagaccagaaagtcatttctaaatttggaatttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10752332 |
acatgattctacttgcttgaaacctaaaactaaggatggatgcattctggagtatgcaaattcaaaagaccagaaagtcatttctaaatttggaatttac |
10752233 |
T |
|
| Q |
201 |
actgcagcattcctgacactgtcaacgagaccacaatcacactgtctttacatatt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10752232 |
actgcagcattcctgacactgtcaacgagaccacaatcacactgtctttacatatt |
10752177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 342
Target Start/End: Complemental strand, 10752122 - 10752093
Alignment:
| Q |
313 |
tatattcattgattgtagatatgctttact |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10752122 |
tatattcattgattgtagatatgctttact |
10752093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University