View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4575_low_7 (Length: 279)

Name: NF4575_low_7
Description: NF4575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4575_low_7
NF4575_low_7
[»] chr6 (1 HSPs)
chr6 (1-260)||(22082735-22082994)
[»] chr3 (5 HSPs)
chr3 (1-260)||(19768042-19768301)
chr3 (2-168)||(29199652-29199815)
chr3 (1-150)||(12572312-12572461)
chr3 (1-150)||(13548776-13548925)
chr3 (197-260)||(45456360-45456423)
[»] chr4 (1 HSPs)
chr4 (1-260)||(37616986-37617240)
[»] chr5 (2 HSPs)
chr5 (1-168)||(4351620-4351788)
chr5 (197-260)||(40164845-40164908)
[»] chr2 (1 HSPs)
chr2 (197-260)||(7827613-7827676)
[»] chr1 (3 HSPs)
chr1 (197-260)||(6921686-6921749)
chr1 (197-260)||(38238129-38238192)
chr1 (11-90)||(51389655-51389734)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 22082994 - 22082735
Alignment:
Q  1 ggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggccaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||           
T  22082994 ggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggcaaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagaaaaaaa 22082895  T
Q  101 ncttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacat 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22082894 acttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacat 22082795  T
Q  201 ataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22082794 ataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactat 22082735  T

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Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 19768301 - 19768042
Alignment:
Q  1 ggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggccaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||           
T  19768301 ggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcagaggaaaaaa 19768202  T
Q  101 ncttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacat 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19768201 acttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacat 19768102  T
Q  201 ataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactat 260  Q
    |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  19768101 ataagcttaagtgttcttaattcaaatacgatctaaaaacacatcaactaccaacactat 19768042  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 29199815 - 29199652
Alignment:
Q  2 gcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggccaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagnnnnnnnn 101  Q
    ||||||||||||||| |||||||||||| ||||  |||||||||| |||||||||||| ||| |||  ||||||||||||||||||| |||             
T  29199815 gcaaagagtaaaattaaatgaacaaagcatatcctacaaaatggctaaacagaaacatcgaaagcaggcctgaatttgaagtagcagagga---aaaaaa 29199719  T
Q  102 cttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctca 168  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  29199718 cttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctca 29199652  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 12572312 - 12572461
Alignment:
Q  1 ggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggccaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagnnnnnnn 100  Q
    |||||||| ||||||||||| |||||||  |||   |||||||||| ||| ||||| |||||||||| |||||||||||||||||||||| ||           
T  12572312 ggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggcaaaaa 12572411  T
Q  101 ncttacataaacaaaacacataatgcagtataacacacactgacagccac 150  Q
     ||||||||||||||||||| ||||| |  |||||||||||||| |||||    
T  12572412 acttacataaacaaaacacacaatgccgcgtaacacacactgactgccac 12572461  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 13548776 - 13548925
Alignment:
Q  1 ggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggccaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagnnnnnnn 100  Q
    |||||||| ||||||||||| |||||||  |||   |||||||||| ||| ||||| |||||||||| |||||||||||||||||||||| ||           
T  13548776 ggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggcaaaaa 13548875  T
Q  101 ncttacataaacaaaacacataatgcagtataacacacactgacagccac 150  Q
     ||||||||||||||||||| ||||| |  |||||||||||||| |||||    
T  13548876 acttacataaacaaaacacacaatgccgcgtaacacacactgactgccac 13548925  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 45456360 - 45456423
Alignment:
Q  197 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactat 260  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||  ||||||||||||||    
T  45456360 acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactat 45456423  T

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Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 37616986 - 37617240
Alignment:
Q  1 ggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggccaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagnnnnnnn 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||     ||||||||||||||||           
T  37616986 ggcaaagagtaaaattgaatgaaaaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacct-----tgaagtagcagcggaggaaaaaa 37617080  T
Q  101 ncttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacat 200  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37617081 acttacataaacaaaacacataatgcagtataacacacgctgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacat 37617180  T
Q  201 ataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactat 260  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  37617181 ataagcttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactat 37617240  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 4351788 - 4351620
Alignment:
Q  1 ggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggccaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagnnnnnnn 100  Q
    |||||||| ||||||||||| |||||||  |||   |||||||||| ||| ||||| || ||||||| |||| ||||||||||||||||| ||           
T  4351788 ggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaatcgaaggcagacctaaatttgaagtagcagcgcaggaacaaa 4351689  T
Q  101 ncttacataaacaaaacacataatgcagtataacacacactgacagccacg-aagaaaaagctccctca 168  Q
     ||||||||||||||||| | ||||| |  |||||||||||||| |||||| || ||||||||||||||    
T  4351688 acttacataaacaaaacaaacaatgccgcgtaacacacactgactgccacgaaaaaaaaagctccctca 4351620  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 40164908 - 40164845
Alignment:
Q  197 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactat 260  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  40164908 acatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacgctat 40164845  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 7827613 - 7827676
Alignment:
Q  197 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactat 260  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||| ||| ||||||||||||||    
T  7827613 acatataaacttaagtcttcttaattcaaatacaatctaaaaacatatcaactaccaacactat 7827676  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 6921749 - 6921686
Alignment:
Q  197 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactat 260  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||  ||||||||||||||    
T  6921749 acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactat 6921686  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 38238129 - 38238192
Alignment:
Q  197 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactat 260  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||  ||||||||||||||    
T  38238129 acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactat 38238192  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 51389655 - 51389734
Alignment:
Q  11 aaaattgaatgaacaaagcctatcgcacaaaatggccaaacagaaacattgaaggcatacctgaatttgaagtagcagcg 90  Q
    ||||||||| |||||||| ||||||||||||| ||| |||||||||||   |||||| || |||| ||||||||||||||    
T  51389655 aaaattgaacgaacaaagtctatcgcacaaaacggctaaacagaaacaccaaaggcagacttgaaattgaagtagcagcg 51389734  T

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