View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4576-Insertion-10 (Length: 456)

Name: NF4576-Insertion-10
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4576-Insertion-10
NF4576-Insertion-10
[»] chr8 (1 HSPs)
chr8 (8-456)||(5439826-5440275)


Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Complemental strand, 5440275 - 5439826
Alignment:
Q  8 ttactatattttcctttttaaccgaaaaatttcccaagacgnnnnnnnagctacaccaagaaatacatgaacagatagaaaatggaagaccggtaaagag 107  Q
    ||||||||||||||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  5440275 ttactatattttcctttttaaccgaaaaatttcccaaaacgtttttttagctacaccaagaaatacatgaacagatagaaaaaggaagaccggtaaagat 5440176  T
Q  108 atgtaaatatagcaaaataagttttgtgtttaattgaatgtctctaaattatgcatattagccaaacaacatgaccttaattgtataggctctgctaagc 207  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5440175 atgtaaatatagcaaaataagttttgtgtttaattggatgtctctaaattatgcatattagccaaacaacgtgaccttaattgtataggctctgctaagc 5440076  T
Q  208 tagttttgtgggtagtgtgttagttttcctcattcaggagtttatggtgccccgtgttcgactgtgagtttctcccttcatggcatgattcattgacaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5440075 tagttttgtgggtagtgtgttagttttcctcattcaggagtttatggtgccccgtgttcgactatgagtttctcccttcatggcatgattcattgacaaa 5439976  T
Q  308 acttttggtccgcaactccactatgaacatgattgctctttcaccctctttttagttaatggcactacaaacaag-aaacgtgaattttatgcattattg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  5439975 acttttggtccgcaactccactatgaacatgattgctctttcaccctctttttagttaatggcactacaaacaagaaaacatgaattttatgcattattg 5439876  T
Q  407 tccagtcccacttaattatgactcagtatgaggttcttacgtcccatata 456  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5439875 tccaatcccacttaattatgactcagtatgaggttcttacgtcccatata 5439826  T

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