View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576-Insertion-11 (Length: 413)
Name: NF4576-Insertion-11
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576-Insertion-11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Original strand, 49694556 - 49694952
Alignment:
| Q |
8 |
gttggcattagaagtttcttccaccgtatcaatggtttcagtgttttccacttgcaagttactttccattacattatcagtctcaattaactcaacccta |
107 |
Q |
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| T |
49694556 |
gttggcattagaagtttcttccaccgtatcagtggtttc---------cacttgcaagttactttccattacattatcagtctcaattaactcatcccta |
49694646 |
T |
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| Q |
108 |
attccatcatctctatctaaaccatataatttcatatcatcattttcaatttcattaaatgcaacacttaccttcccaaattgctcattctccaaaccat |
207 |
Q |
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| T |
49694647 |
attccatcatctctatctaaaccatataatttcatatcatcattttcaatttcattaaatgcaacacttaccttcccaaattgctcattctccaaaccat |
49694746 |
T |
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| Q |
208 |
ctctggaatactgcgacataacatcagaatcagttgcagtagcagtagagtctccatcacaagctattcttattccaataccttctccatcaatggaaac |
307 |
Q |
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| T |
49694747 |
ctctggaatactgcgacataacatcagaatcagttgcagtagcagtagagtctccatcacaagctactcttattccaataccttctccatcaatggaaac |
49694846 |
T |
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| Q |
308 |
atcggaacctgaatcagaattttctttttcaacgtccagcaccttaattctcggtgcgaggacaacattctccggtactctcacaacattcatgatttca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49694847 |
atcggaacctgaatcagaattttctttttcaacgtccagcaccttaattctcggtgcgaggacaacattctccggtactctcacaacattcatgatttca |
49694946 |
T |
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