View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576-Insertion-12 (Length: 244)
Name: NF4576-Insertion-12
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576-Insertion-12 |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 16718748 - 16718980
Alignment:
| Q |
7 |
aatcattaatgcattgaatgaaaatatggaggtgatgaattaattttgtagagaggagtggtaacttgcaacagattgtaactcaaagcataaattctta |
106 |
Q |
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| T |
16718748 |
aatcattaatgcattgaatgaaaacatggaggtgatgaattaattttgtagagaggagtggtaacttgcaacagattgtaactcaaagcataaattctta |
16718847 |
T |
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| Q |
107 |
ttaaaaataaaagaaaccagatgtgaagtttgacagacagggaagaaaaactgaaagggacacgatcctatgtaaaatccaaatagttctcaatttttat |
206 |
Q |
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| T |
16718848 |
ttaaaaataagagaaaccagatgtgtagtttgacagacagggaagaaaaactgaaagggacacgatcctatgtaaaatccaaatagttctcaatttttat |
16718947 |
T |
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| Q |
207 |
tttcaaaaaatcttaacctttaattaaatctaa |
239 |
Q |
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| T |
16718948 |
tttcaaaaagtcttaacctttaattaaatctaa |
16718980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 24565866 - 24565630
Alignment:
| Q |
7 |
aatcattaatgcattgaatgaaaatatggaggtgatgaattaattttgtagagaggagtggtaacttgcaacagattgtaactcaaagcataaattctt- |
105 |
Q |
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|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |
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| T |
24565866 |
aatcattaatacgttgaatgaaaacatggaggtgatgaattaattttgtagagaggggttgtaacttgcaaca-attgtaactcaaagcataaattctta |
24565768 |
T |
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| Q |
106 |
attaaaaataaaagaaaccagatgtgaagtttgacagacagggaagaaaaactgaaagggacacgatcctatgt-aaaatccaaatagttctcaattttt |
204 |
Q |
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| T |
24565767 |
ataaaaaattaaagaaaccagacgtgtagtttgac--acagggaagaaaacctgaaagggacacgatcgtgtgtaaaaatccaaatacttctcatttttt |
24565670 |
T |
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| Q |
205 |
attttcaaaaaatcttaacctttaattaaatctaatggta |
244 |
Q |
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| T |
24565669 |
attttaaaaaaatctaaaccattaattaaatctaatggta |
24565630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 24606902 - 24606666
Alignment:
| Q |
7 |
aatcattaatgcattgaatgaaaatatggaggtgatgaattaattttgtagagaggagtggtaacttgcaacagattgtaactcaaagcataaattctt- |
105 |
Q |
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|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |
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| T |
24606902 |
aatcattaatacgttgaatgaaaacatggaggtgatgaattaattttgtagagaggggttgtaacttgcaaca-attgtaactcaaagcataaattctta |
24606804 |
T |
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| Q |
106 |
attaaaaataaaagaaaccagatgtgaagtttgacagacagggaagaaaaactgaaagggacacgatcctatgt-aaaatccaaatagttctcaattttt |
204 |
Q |
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| T |
24606803 |
ataaaaaattaaagaaaccagacgtgtagtttgac--acagggaagaaaacctgaaagggacacgatcgtgtgtaaaaatccaaatacttctcatttttt |
24606706 |
T |
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| Q |
205 |
attttcaaaaaatcttaacctttaattaaatctaatggta |
244 |
Q |
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| T |
24606705 |
attttaaaaaaatctaaaccattaattaaatctaatggta |
24606666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 36611421 - 36611485
Alignment:
| Q |
180 |
aaaatccaaatagttctcaatttttattttcaaaaaatcttaacctttaattaaatctaatggta |
244 |
Q |
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| T |
36611421 |
aaaatccaaatatttctcattttttattttaaaaaaatctaaaccattaattaaatctaatggta |
36611485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 53242775 - 53242723
Alignment:
| Q |
192 |
gttctcaatttttattttcaaaaaatcttaacctttaattaaatctaatggta |
244 |
Q |
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| T |
53242775 |
gttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggta |
53242723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 40584163 - 40584111
Alignment:
| Q |
41 |
atgaattaattttgtagagaggagtggtaacttgcaacagattgtaactcaaa |
93 |
Q |
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| T |
40584163 |
atgaatcaattttgttgagacgagtggttacttacaacaaattgtaactcaaa |
40584111 |
T |
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