View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576-Insertion-13 (Length: 221)
Name: NF4576-Insertion-13
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576-Insertion-13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 14010620 - 14010407
Alignment:
| Q |
8 |
actataactcttatacatactgcaattataaatttcttttacaaacaagaaagatattagtttatatagtgtttaatttgttttgnnnnnnnctcttcag |
107 |
Q |
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| T |
14010620 |
actataactcttatacatactgcaattataaatttcttttacaaacaagaaagatattagtttatatagtgtttaatttgttttgtttttttctcttcag |
14010521 |
T |
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| Q |
108 |
gggatcgtgttaaatttgttatacatattttgtatttaaacaattattttttaatcaaattatactcgttggacctttgtatccctgatgttaaatttca |
207 |
Q |
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| T |
14010520 |
gggatcgtgttaaatttgttatacatattttgtatttaaacaattattttttaatcaaattatactcgttggacctttgtatccctgatgttaaatttca |
14010421 |
T |
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| Q |
208 |
agctccgtacctgc |
221 |
Q |
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| T |
14010420 |
agctccgtgcctgc |
14010407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 40338209 - 40338244
Alignment:
| Q |
135 |
ttttgtatttaaacaattattttttaatcaaattat |
170 |
Q |
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| T |
40338209 |
ttttgtttttaaacaattattttttaatcaaattat |
40338244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 24303683 - 24303648
Alignment:
| Q |
135 |
ttttgtatttaaacaattattttttaatcaaattat |
170 |
Q |
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| T |
24303683 |
ttttgtttttaaacaattattttttaatcaaattat |
24303648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 20462750 - 20462700
Alignment:
| Q |
121 |
atttgttatacatattttgtatttaaacaattatt-ttttaatcaaattat |
170 |
Q |
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| T |
20462750 |
atttcttatatatattttatatttaaacaattattcttttaatcaaattat |
20462700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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