View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576-Insertion-2 (Length: 1021)
Name: NF4576-Insertion-2
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 829; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 829; E-Value: 0
Query Start/End: Original strand, 7 - 981
Target Start/End: Original strand, 33785941 - 33786918
Alignment:
| Q |
7 |
acaaacaacaaatttattaattggttacttcaacatcaaggcattaacaagctattagttgatnnnnnnn-cgtgatttggtgattgattttctaaatct |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33785941 |
acaaacaacaaatttattaattggttacttcaacatcaaggcattaacaagctattagttgataaaaaaaacgtgatttggtgattgattttctaaatcg |
33786040 |
T |
|
| Q |
106 |
gtatcgtgatttaaatgattttttgtccgatttaaagactgatttgcaaaaaatggataaaactatggtcgataatgtttaacatttgtcatttttcggc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33786041 |
gtatcgtgatttaaatgattttttgtccgatttaaagactgatttgcaaaaaatggataaaactatggtcgataatgtttaacatttgtcatttttcggc |
33786140 |
T |
|
| Q |
206 |
ctatgatacacaaaaactatagtaatggtcgataagttttatactatcaacaaagtcacacatataattgattgtgatttgttgatagtataaaactttt |
305 |
Q |
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| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33786141 |
-tctgatacacaaaaactatagtaatggttgataagttttatactatcaacaaagtcaca--tataattgattgtgatttgttgatagtataaaactttt |
33786237 |
T |
|
| Q |
306 |
tataccgatggtttatcaaaattaaacgaactagatacataccttaggaataagtgattgtctatcaagaatttcaaaaactgatgcaactgctgttgag |
405 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33786238 |
tataccgacggtttatcaaaattaaacgaactagatacataccttaggaataagagattgtctatcaagaatttcaaaaactgatgcaactgctgttgag |
33786337 |
T |
|
| Q |
406 |
cttttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtactcaccaaaacnnnnnnngttttgaacacatcacctgaagaaattt |
505 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33786338 |
cttttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtactcaccaaaacaaaaaaagttttgaacacatcacctgaagaaattt |
33786437 |
T |
|
| Q |
506 |
ctctcttttcgaccaatttacctccataccaaaaatccaaagcccaacacataaaagttaaacactgagcagatcccataccaatgccagctagccaagc |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33786438 |
ctctcttttcgaccaatttacctccataccaaaaatccaaagcccaacacataaaagttaaacactgagcagatcccataccaatgccagctagccaagc |
33786537 |
T |
|
| Q |
606 |
tttcttcctagcttccatcctcggcgcctcttgcgcctcgtcaaacagtctcaaaacttttgtgatgcttccaaaagaagttacaattctgtgattataa |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33786538 |
tttcttcctagcttccatcctcggcgcctcttgcgcctcgtcgaacagtctcaaaacttttgtgatgcttccaaaagaagttacaattctgtgattataa |
33786637 |
T |
|
| Q |
706 |
gccgcctcgacagcaatctgtgtgctttgattctgcgccttaacgaatttagttgaaagtgtagaaagcaaaacttttcgcgtatagaaacaaagtattg |
805 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33786638 |
accgcctcgacagcaatctgtgtgctttgattctgcgccttaacgaatttagttgaaagtgtagaaagcaaaacttttcgcgtatagaaacaaagtattg |
33786737 |
T |
|
| Q |
806 |
taagcggttgaactgctatcataacaagtgctagcttccaagctacaacaagacctatgatcatcgcgattgtgacggctgaagctgtttgaacaagtaa |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33786738 |
taagcggttgaactgctatcataacaagtgctagcttccaagctacaacaagacctatgatcatcgcgattgtgacggctgaagctgtttgaacaagtaa |
33786837 |
T |
|
| Q |
906 |
acaaactctatcagcacggggcga-ttca-catcgaagcttcg-tactca--cctgaacataatgcttcactagagttttt |
981 |
Q |
| |
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|||||||||||||||| | |||| |||| ||||||||||||| |||||| | ||||||||||||| ||||||||||||| |
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| T |
33786838 |
acaaactctatcagcaacgagcgatttcaccatcgaagcttcgttactcaaccttgaacataatgctccactagagttttt |
33786918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 408 - 469
Target Start/End: Complemental strand, 2623381 - 2623320
Alignment:
| Q |
408 |
tttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtactcaccaaaa |
469 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||| |
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|
| T |
2623381 |
tttagcaagatcattcgtcatgctaccagcatcagcgataacttttccggtacttaccaaaa |
2623320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 408 - 469
Target Start/End: Complemental strand, 2591837 - 2591776
Alignment:
| Q |
408 |
tttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtactcaccaaaa |
469 |
Q |
| |
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||||||||||||| |||||||||||||| ||||| || |||||||||||| | ||||||| |
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| T |
2591837 |
tttagcaagatcattcgtcatgctaccagcatcagcaattacttttccggtagttaccaaaa |
2591776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 46937032 - 46936957
Alignment:
| Q |
257 |
aaagtcacacatataattgattgtgatttgttgatagtataaaactttttataccgatggtttatcaaaattaaac |
332 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | ||||||||||||| ||| | || ||||||||||||| |
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|
| T |
46937032 |
aaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacaccaagagtgcatcaaaattaaac |
46936957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 44556777 - 44556727
Alignment:
| Q |
257 |
aaagtcacacatataattgattgtgatttgttgatagtataaaacttttta |
307 |
Q |
| |
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|||||| |||||||||||||||||||||| ||| ||| |||||||||||| |
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|
| T |
44556777 |
aaagtcgcacatataattgattgtgattttttggcagtttaaaacttttta |
44556727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 45128729 - 45128779
Alignment:
| Q |
257 |
aaagtcacacatataattgattgtgatttgttgatagtataaaacttttta |
307 |
Q |
| |
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|||||||||||||| ||||||||| || ||||||||| |||||||||||| |
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|
| T |
45128729 |
aaagtcacacatatgattgattgtaatgcgttgatagtgtaaaacttttta |
45128779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 21008178 - 21008134
Alignment:
| Q |
257 |
aaagtcacacatataattgattgtgatttgttgatagtataaaact |
302 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| ||||||||||||| |
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|
| T |
21008178 |
aaagtcaca-atataaatgattgtgatttgttcatagtataaaact |
21008134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 40363143 - 40363196
Alignment:
| Q |
257 |
aaagtcacacatataattgattgtgatttgttgatagtat-aaaactttttata |
309 |
Q |
| |
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||||||||| |||||||||||| | ||||||||||| ||| ||||||||||||| |
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|
| T |
40363143 |
aaagtcacatatataattgattctaatttgttgataatataaaaactttttata |
40363196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 43244870 - 43244903
Alignment:
| Q |
257 |
aaagtcacacatataattgattgtgatttgttga |
290 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |
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| T |
43244870 |
aaagtcacacatattattgattgtgatttgttga |
43244903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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