View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4576-Insertion-3 (Length: 1013)
Name: NF4576-Insertion-3
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576-Insertion-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 671; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 7 - 696
Target Start/End: Complemental strand, 32096142 - 32095452
Alignment:
| Q |
7 |
aaatcgattgttaatcataacgctggaacccttgtttatagtctctgttgatttggttaataggacggttgccaagtaatgagccactattcttcttatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32096142 |
aaatcgattgttaatcataacgctggaacccttgtttatagtctctgttgatttggttaataggacggttgccaagtaatgagccattattcttcttatg |
32096043 |
T |
|
| Q |
107 |
gtattacttctgttgggcaattatacttcgtatttagctattcatggtagttagttaggaatttcattttatatccaatgcttggtcttggttaagatta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32096042 |
gtattacttctgttgggcaattatacttcgtatttagctattcatggtagttagttaggaatttcattttatatccaatgcttggtcttggttaagatta |
32095943 |
T |
|
| Q |
207 |
ctgtataattagttactccaattttgatttattattggcactatttgg-ggtagtcggtcgtatcttggccattgtatcaagcctgtattagttaaagag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32095942 |
ctgtataattagttactccaattttgatttattattggcactatttggtggtagtcggtcgtatcttggtcattgtatcaagcctgtattagttaaagag |
32095843 |
T |
|
| Q |
306 |
ctaatatatttatagaattacggtgttggatcaccatgtgccccatctcatggatttgaatttttgtttactgaaatgaaatggttaacttgtgcagact |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095842 |
ctaatatatttatagaattacggtgttggatcaccatgtgccccatctcatggatttgaatttttgtttactgaaatgaaatggttaacttgtgcagact |
32095743 |
T |
|
| Q |
406 |
cagatggaaccggtaattcaggactgcagagagatggtgcaccaatttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatga |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095742 |
cagatggaaccggtaattcaggactgcagagagatggtgcaccaatttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatga |
32095643 |
T |
|
| Q |
506 |
atgtgtaagattttgttttagtgaatatttaatcttgtaacttgtttaaaaattgagtggagcactaagcattgagtaagacacaagttgtgagcgaatc |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095642 |
atgtgtaagattttgttttagtgaatatttaatcttgtaacttgcttaaaaattgagtggagcactaagcattgagtaagacacaagttgtgagcgaatc |
32095543 |
T |
|
| Q |
606 |
agtatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacactcttgtatcctttggttctctttatagaaatcttg |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095542 |
agtatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacactcttgtatcctttggttctctttatagaaatcttg |
32095452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 32 - 322
Target Start/End: Complemental strand, 32092035 - 32091741
Alignment:
| Q |
32 |
gaacccttgtttatagtctctgttgatttggttaataggacggttgccaagtaatgagccactattcttcttatggtatta---cttctgttgggcaatt |
128 |
Q |
| |
|
|||| |||||| ||| | ||| ||||||||||||||| || |||||||||| ||||||| ||| || |||||||||||||| ||||||||| | |||| |
|
|
| T |
32092035 |
gaactcttgttcatactatctattgatttggttaatatgagggttgccaagcaatgagcgactgttattcttatggtattattacttctgttgtgaaatt |
32091936 |
T |
|
| Q |
129 |
atacttcgtatttagctattcatggtagttagttaggaatttcattttatatccaatgcttggtcttggttaagattactgtataattagttactccaat |
228 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32091935 |
gtacttagtatttagctattcatggtggttagttaggaaattcattttataaccaatgcttggtcttggttaagattactgcataattagttactccaat |
32091836 |
T |
|
| Q |
229 |
tttgatttattattggcactatttgg-ggtagtcggtcgtatcttggccattgtatcaagcctgtattagttaaagagctaatatatttatagaa |
322 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
32091835 |
gttgatttattattgcaactatttggtggtagtcggtcgtatcttggtcaatgtatcaagcctgtatttgttaaagagctaatataattatagaa |
32091741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 696 - 850
Target Start/End: Complemental strand, 32095428 - 32095274
Alignment:
| Q |
696 |
gttgttaattaatttattctgtctgatgaatatctgaattgcatctttctgttgaattaaagatttctgtgaaatcaaactcactgaccgatcaaatgtg |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
32095428 |
gttgttaattaatttattctgtctgatgaatatctgaattgcatctttctgttgaattaaagatttctgtgaaatcaaactcactgaccgaacgaatgtg |
32095329 |
T |
|
| Q |
796 |
tggttacttgacattgacaacagggaatcaatatccgttatagtgaccaataggg |
850 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095328 |
tggttacttgacattgacaacagggaatcaatatccgttatagtgaccaataggg |
32095274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 452 - 672
Target Start/End: Complemental strand, 32089795 - 32089576
Alignment:
| Q |
452 |
ttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgtt |
551 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||| | |
|
|
| T |
32089795 |
ttggagatgtaattagaaggtaattcatat-gtgaaagatgaagactcttatggatgcgtaagattttgttttagtggatatttaatcttttaacttgct |
32089697 |
T |
|
| Q |
552 |
taaaaattgagtggagcactaagcattgagtaagacacaagttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatag |
651 |
Q |
| |
|
|||||||| | || |||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
32089696 |
taaaaattaactgcagcactaagcatcgagtaagacacaaattgtgagtgaatcattatgaaaaatagggaaagggacactccagctttagtttaaatag |
32089597 |
T |
|
| Q |
652 |
aggatcacactcttgtatcct |
672 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32089596 |
aggatcacactcttgtatcct |
32089576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 855 - 994
Target Start/End: Complemental strand, 32093775 - 32093636
Alignment:
| Q |
855 |
aaaattgagctgaccaatgtattgagttcaat-catgtaattgttataggacaatatttttcatcatattgagaacatgaggccaaatttcaaccattat |
953 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
32093775 |
aaaattgagctgaccaatgtattgagttcaaagcatgtaattgttataggacaatatttt-catcatattgagaacatgaggccaaattcaaaccaatat |
32093677 |
T |
|
| Q |
954 |
tttaattttagcactgttgactcaggactggctagagtgga |
994 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32093676 |
tttaattttagcactgttgactcaagactggctagagtgga |
32093636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 312 - 411
Target Start/End: Complemental strand, 32091717 - 32091611
Alignment:
| Q |
312 |
tatttatagaattacggtgttggatcaccatgtg-------ccccatctcatggatttgaatttttgtttactgaaatgaaatggttaacttgtgcagac |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
32091717 |
tatttatagaattacggtgttggatcaccatgtggcatgtgccctatctcatggatttgaatttttgtttactgaaatgaaatggttaacctgtgtagac |
32091618 |
T |
|
| Q |
405 |
tcagatg |
411 |
Q |
| |
|
||||||| |
|
|
| T |
32091617 |
tcagatg |
32091611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 29887778 - 29887882
Alignment:
| Q |
99 |
ttcttatggtattacttctgttgggcaattatacttcgtatttagctattcatggtagttagttaggaatttcattttatatccaatgcttggtcttggt |
198 |
Q |
| |
|
||||||||||||||| | | |||| |||| ||||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
29887778 |
ttcttatggtattaccttttgtgggaaattgtactttgtatttagctattcatggtggttacataggaatttcataatatatctaatgcttggtattggt |
29887877 |
T |
|
| Q |
199 |
taaga |
203 |
Q |
| |
|
||||| |
|
|
| T |
29887878 |
taaga |
29887882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 809 - 850
Target Start/End: Complemental strand, 32088285 - 32088244
Alignment:
| Q |
809 |
ttgacaacagggaatcaatatccgttatagtgaccaataggg |
850 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
32088285 |
ttgacaacagggaatcgatatccgttatagtgatcaataggg |
32088244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 29427907 - 29427872
Alignment:
| Q |
306 |
ctaatatatttatagaattacggtgttggatcacca |
341 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29427907 |
ctaatatattaatagaattacggtgttggatcacca |
29427872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 29904017 - 29904125
Alignment:
| Q |
93 |
ctattcttcttatggtattacttctgttgggcaattatacttcgtatttagctattcatggtagttagttaggaatttcattttatatccaatgcttggt |
192 |
Q |
| |
|
||||| ||||||||||||| | || |||| |||| ||||| ||||||||||||||||| |||||| | |||||||||| | |||| | |||||||| |
|
|
| T |
29904017 |
ctattattcttatggtattgcctcctgtgggaaattgtactttgtatttagctattcatgatagttacat-ggaatttcataat-tatctactgcttggt |
29904114 |
T |
|
| Q |
193 |
cttggttaaga |
203 |
Q |
| |
|
||||||||||| |
|
|
| T |
29904115 |
cttggttaaga |
29904125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 29428098 - 29428029
Alignment:
| Q |
150 |
atggtagttagttaggaatttcattttatatccaatgcttggtcttggttaagattactgtataattagt |
219 |
Q |
| |
|
||||| |||||||||||| ||||| ||||| ||||||||| | || ||||||||| ||||| ||||||| |
|
|
| T |
29428098 |
atggttgttagttaggaaattcataatatattcaatgcttgttatttgttaagattgctgtaaaattagt |
29428029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 41746472 - 41746623
Alignment:
| Q |
93 |
ctattcttcttatggtattacttctgttgggcaattatacttc-gtatttagctattcatggtagttagttaggaatttcattttatatcca---atgct |
188 |
Q |
| |
|
||||| || |||||||||||| |||||| || | || ||||| |||||||||||| |||| |||| ||||| ||||||| |||||||| ||||| |
|
|
| T |
41746472 |
ctattattattatggtattacctctgtttggaagttgtactttagtatttagctatatgtggtggttacttaggtatttcataatatatccagttatgct |
41746571 |
T |
|
| Q |
189 |
tggtcttggttaagattactgtataattagttactccaattttgatttatta |
240 |
Q |
| |
|
|||| | ||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
41746572 |
tggtttaggttaagattattgtataattagttactccaatgttgatttatta |
41746623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 317 - 394
Target Start/End: Original strand, 41746719 - 41746796
Alignment:
| Q |
317 |
atagaattacggtgttggatcaccatgtgccccatctcatggatttgaatttttgtttactgaaatgaaatggttaac |
394 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||| ||| | ||||||| |||||| ||||||||||||||| ||||| |
|
|
| T |
41746719 |
atagaattacagtgtcggatcaccatgtgctccatttcacgtatttgaacttttgtatactgaaatgaaatgtttaac |
41746796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University