View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4576-Insertion-6 (Length: 796)
Name: NF4576-Insertion-6
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576-Insertion-6 |
 | |
|
| [»] scaffold0384 (1 HSPs) |
| | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 614; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 7 - 692
Target Start/End: Original strand, 46427754 - 46428436
Alignment:
| Q |
7 |
aatatgcacttcatccatatgcacataagttggttatactttttatattgatttagcctattatttctttccctattattatatcctataccggtcttct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46427754 |
aatatgcacttcatccatatgcacataagttggttatactttttatattgatttagcctattatttctttccctattattatatcctataccggtcttct |
46427853 |
T |
|
| Q |
107 |
attctgtttgttgctactgttgtgctgtgccttgtcttttaagcctttccttttttaactttcaaccatgttaaaattacatcaatctttcatttttatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46427854 |
attctgtttgttgctactgttgtgctgtgccttgtcttttaagcctttccttttttaactttcaaccatgttaaaattacatcaatctttcatttttatt |
46427953 |
T |
|
| Q |
207 |
tgatcaaaacattaaacagaattggctaaagagcattgtttaaatacaagcaaaagtgaagttgctaagaggcagaaagtaagaagcacaaagagaaagt |
306 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46427954 |
tgatcaaaacattaaacagaatttgctaaagagcattgtttaaatacaagcaaaagtgaagttgctaagaggcagaaagtaagaagcacaaagagaaagt |
46428053 |
T |
|
| Q |
307 |
ttcgtgatgtttgtcgtgcaagaaacaagaacgaagttgccaagaaacaagaattaggagccacagagcgagagccttatatgacaagcaagaatgatgt |
406 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428054 |
ttcgtgatgttcgtcgtgcaagaaacaagaacgaagttgccaagaaacaagaattaggggccacggagcgagagccttatatgacaagcaagaatgatgt |
46428153 |
T |
|
| Q |
407 |
tgttaagaaacaaaaagtagggggcacagagcgaaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttctttgcagttaaatta |
506 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428154 |
tgttaataaacaaaaaatagggggcacagagcgaaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttctttgcagttaaatta |
46428253 |
T |
|
| Q |
507 |
atttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428254 |
atttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaa |
46428353 |
T |
|
| Q |
607 |
atgcaagttc---ttgattgagtgttatatggacatgtgtttatcttgccattg-tgccaggcttgggaaattcaacccatttcattcta |
692 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
46428354 |
atgcaagttctaattgattgag-------tggacatgtgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattcta |
46428436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 395 - 630
Target Start/End: Original strand, 46027825 - 46028059
Alignment:
| Q |
395 |
caagaatgatgttgttaagaaacaaaaagtagggggcacagagcgaaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttcttt |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46027825 |
caagaatgatgttgttaagaaacaaaaagtagggggcacagtgcgaagaggagaaagtaagttttactcaatgctgtaatggtgtattgatatgttcttt |
46027924 |
T |
|
| Q |
495 |
gcagttaaattaatttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcct |
594 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
46027925 |
gcagttaaattaatttaggttaacatgtacttcgtccatctgttatgatttaaattttgacttt-aaactatgtgaagatacaattatttttgctttcct |
46028023 |
T |
|
| Q |
595 |
gtttttatgaaaatgcaagttcttgattgagtgtta |
630 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
46028024 |
gtttttatgaagatgcaagttcttgtttgagtgtta |
46028059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 440 - 691
Target Start/End: Original strand, 46015825 - 46016078
Alignment:
| Q |
440 |
aaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgtta |
539 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46015825 |
aaaaagagcaagtaagttttactcaatgctgtaatgatgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgtta |
46015924 |
T |
|
| Q |
540 |
tgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgtt-atatggaca |
638 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
46015925 |
tgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatacaca |
46016024 |
T |
|
| Q |
639 |
tgtgtttatcttgccattg-tgccaggcttgggaaattcaacccatttcattct |
691 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
46016025 |
tatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct |
46016078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 200 - 397
Target Start/End: Original strand, 46027585 - 46027788
Alignment:
| Q |
200 |
ttttatttgatcaaaacattaaacagaattggctaaagagcattgtttaaatacaagcaaaagtgaagttgctaagaggcagaaagtaagaagcacaaag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | |||| |||||||| ||||| ||||| ||||||||||| || ||| |||||||||||||||||| |
|
|
| T |
46027585 |
ttttatttgatcaaaacattaaacagaatttgctgaggagcgttgtttaattacaaacaaaaatgaagttgctatgaagcaaaaagtaagaagcacaaag |
46027684 |
T |
|
| Q |
300 |
agaaagtttcgtg------atgtttgtcgtgcaagaaacaagaacgaagttgccaagaaacaagaattaggagccacagagcgagagccttatatgacaa |
393 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
46027685 |
agaaagtttcgtgtggtgtatgttcgtcgtgcaagaaacaagaacgaagttgctaagaaacaagaattaggggccacagagcgagagccttgcttgacaa |
46027784 |
T |
|
| Q |
394 |
gcaa |
397 |
Q |
| |
|
|||| |
|
|
| T |
46027785 |
gcaa |
46027788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 69 - 347
Target Start/End: Original strand, 46015514 - 46015789
Alignment:
| Q |
69 |
atttctttccctattattatatcctataccggtcttctattctgtttgttgctactgttgtgctgtgccttgtcttttaagcctttccttttttaacttt |
168 |
Q |
| |
|
||||| ||| |||||||||||||| || ||| |||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||| |
|
|
| T |
46015514 |
atttcattctctattattatatccaatgccgttcttctattctgttagttgctattgttgt--tgtgccttgt------------tccttttttaacttt |
46015599 |
T |
|
| Q |
169 |
caa----ccatgttaaaattacatcaatctttcatttt-tatttgatcaaaacattaaacagaattggctaaagagcattgtttaaatacaagcaaaagt |
263 |
Q |
| |
|
||| |||| ||||||| || ||| |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| | |
|
|
| T |
46015600 |
caatcaaccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaat |
46015699 |
T |
|
| Q |
264 |
gaagttgctaagaggcagaaagtaagaagcacaaagagaaagtttcgt------gatgtttgtcgtgcaagaaacaagaacgaagttgcc |
347 |
Q |
| |
|
||||||||||||| || ||||||||| ||| | ||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46015700 |
gaagttgctaagaaacaaaaagtaagacgcatagggagaaagtttcgtctggagaatgttcgtcgtgcaagaaacaagaacgaagttgcc |
46015789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 509 - 691
Target Start/End: Original strand, 46020784 - 46020976
Alignment:
| Q |
509 |
ttgggttaacatgtacttcgt---ccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatt------tttgctttcctgtttt |
599 |
Q |
| |
|
||||||||||||||||| | | ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| | | ||||||||||| |
|
|
| T |
46020784 |
ttgggttaacatgtactacttgatccatctgttatgatttacgttttgactttaaaactatgtgaagatacaattattcacaaataagttttcctgtttt |
46020883 |
T |
|
| Q |
600 |
tatgaaaatgcaagttcttgattgagtgtt-atatggacatgtgtttatcttgccattg-tgccaggcttgggaaattcaacccatttcattct |
691 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||| |||| ||| ||||||||| ||| |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
46020884 |
-atgaaaatccaagttcttgattgagtgttaaaatgcacatatgtctatcttgccgttgttgccagacttgggaaattcagcccatttcattct |
46020976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 512 - 630
Target Start/End: Original strand, 46015351 - 46015468
Alignment:
| Q |
512 |
ggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgca |
611 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||| |||||||||| |||||||| ||| ||||||| |||| || ||| ||||||| ||||||||||||||| |
|
|
| T |
46015351 |
ggttaacatgcacttcatccatctgttatgatgtacattttgagtttaaaaccatgtgaagataaaattcttgttgttttcctg-ttttatgaaaatgca |
46015449 |
T |
|
| Q |
612 |
agttcttgattgagtgtta |
630 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
46015450 |
acctcttgattgagtgtta |
46015468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 512 - 630
Target Start/End: Original strand, 46020583 - 46020700
Alignment:
| Q |
512 |
ggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgca |
611 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||| || ||| |||||||| ||| |||||||||||| |||||| |||||| |||||||||||||||| |
|
|
| T |
46020583 |
ggttaacatgcacttaatccatctgttatgatttaccttatgagtttaaaaccatgtgaagatacaattctttttgttttcct-tttttatgaaaatgca |
46020681 |
T |
|
| Q |
612 |
agttcttgattgagtgtta |
630 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
46020682 |
acctcttgattgagtgtta |
46020700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 448 - 622
Target Start/End: Complemental strand, 46303970 - 46303795
Alignment:
| Q |
448 |
aaagtaagttttact-caatgctgtaatggtatattgatatgttctttgcagttaaattaatttggg-ttaacatgtacttcgtccaactgttatgattt |
545 |
Q |
| |
|
||||||||||||||| ||||| ||| ||| |||| | ||||||||||| || |||||| ||||| |||||||| | ||| |||| |||||||||||| |
|
|
| T |
46303970 |
aaagtaagttttacttcaatgttgtgatgtcgtattaacatgttctttgctgtgaaattagcttggggttaacatgcatttcatccatctgttatgattt |
46303871 |
T |
|
| Q |
546 |
acattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgatt |
622 |
Q |
| |
|
| |||||||||||||||||||| ||||| |||||| ||| ||||||||| |||||| | |||||||| |||||||| |
|
|
| T |
46303870 |
agattttgactttaaaactatgtgaagacacaattctttatgctttcct-attttattacaatgcaagctcttgatt |
46303795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 457 - 630
Target Start/End: Original strand, 46021197 - 46021371
Alignment:
| Q |
457 |
tttactcaatgctgtaatg--gtat--attgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgttatgatttacatttt |
552 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| || |||||||||||||||||||| ||||||||| ||| | |||| ||||||||||||| | || |
|
|
| T |
46021197 |
tttactcaatgctgtaatgttgtattaattaatatattatttgcagttaaattaatttgagttaacatgcactccatccatctgttatgatttaga--tt |
46021294 |
T |
|
| Q |
553 |
gactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgtta |
630 |
Q |
| |
|
|||||||||| || ||||| |||||| ||| |||||||||| |||||| |||||||| |||||||||| ||||| |
|
|
| T |
46021295 |
gactttaaaatcatttgaagacacaattctttctgctttcctg-ttttatagaaatgcaacctcttgattgaatgtta |
46021371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 512 - 630
Target Start/End: Complemental strand, 46246350 - 46246233
Alignment:
| Q |
512 |
ggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgca |
611 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||| || | | |||||||| || |||||||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
46246350 |
ggttaacatgcacttaatccatctgttatgatttaccttataagtttaaaaccttgtgaagatacaattcttttttttttcct-tttttatgaaaatgca |
46246252 |
T |
|
| Q |
612 |
agttcttgattgagtgtta |
630 |
Q |
| |
|
| |||||||||| ||||| |
|
|
| T |
46246251 |
acctcttgattgaatgtta |
46246233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 542 - 630
Target Start/End: Original strand, 41074446 - 41074533
Alignment:
| Q |
542 |
atttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgtta |
630 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||||| |||||||||| || ||||| |||||||| || |||||||| ||||||| |
|
|
| T |
41074446 |
atttagattttgactttaaaaccatgtgaagatacaattctttttgctttaatg-ttttaagaaaatgctaggtcttgatttagtgtta |
41074533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 440 - 474
Target Start/End: Original strand, 46028345 - 46028379
Alignment:
| Q |
440 |
aaaaggagaaagtaagttttactcaatgctgtaat |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
46028345 |
aaaaggagaaagtaagttttactcaatgctgtaat |
46028379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 534 - 630
Target Start/End: Complemental strand, 4523012 - 4522917
Alignment:
| Q |
534 |
ctgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgtta |
630 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| ||||| |||||| |||||||||||||| |||||||||||| |||| |||||||||||||||| |
|
|
| T |
4523012 |
ctgttatgatttagattttgactttaaaaccatgtgaagacacaattctttttgctttcctg-ttttatgaaaattcaagctcttgattgagtgtta |
4522917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 514 - 630
Target Start/End: Complemental strand, 4525403 - 4525290
Alignment:
| Q |
514 |
ttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaag |
613 |
Q |
| |
|
|||| ||| ||||| |||| |||||||||| || ||||||||||||||| ||| |||| |||||| ||||||||||| || ||||||||||| |||| |
|
|
| T |
4525403 |
ttaaaatgcacttcatccatctgttatgatctaggttttgactttaaaaccatgtgaag--acaattctttttgctttcttg-ttttatgaaaaatcaag |
4525307 |
T |
|
| Q |
614 |
ttcttgattgagtgtta |
630 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4525306 |
ctcttgattgagtgtta |
4525290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 439 - 630
Target Start/End: Complemental strand, 3802384 - 3802190
Alignment:
| Q |
439 |
gaaaaggagaaagtaagttttactcaatgctgtaatg-gta--tattg---atatgttctttgcagttaaattaatttgggttaacatgtacttcgtcca |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | | ||| ||||||| |||| ||||||||||||||| ||| ||| | ||| | || |
|
|
| T |
3802384 |
gaaaaggagaaagtaagttttactcaatgctgtaatttgcacttcttgtcaatatgtt--ttgcggttaaattaatttggcgtaatatgcatttctttca |
3802287 |
T |
|
| Q |
533 |
actgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgtta |
630 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||| |||| |||||||| |||||||||||| |||||||||||| ||| ||||| |||||||||| |
|
|
| T |
3802286 |
tatgttatgatttagatttcgactttaaaaccatgtgaagctacaattagttttgctttcct-attttatgaaaatacaacctcttgtttgagtgtta |
3802190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 479 - 594
Target Start/End: Complemental strand, 3801857 - 3801740
Alignment:
| Q |
479 |
tattgatatgttctttgcagttaaattaatttgggtt--aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatac |
576 |
Q |
| |
|
|||| ||| |||||||||||| |||||| |||||| | |||||| | ||| |||| ||||||||||||| |||||||||||||||| ||| ||||| || |
|
|
| T |
3801857 |
tattaatacgttctttgcagtgaaattagtttggggttaaacatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtgaagacac |
3801758 |
T |
|
| Q |
577 |
aattatttttgctttcct |
594 |
Q |
| |
|
|||| ||| ||||||||| |
|
|
| T |
3801757 |
aattctttatgctttcct |
3801740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 462 - 563
Target Start/End: Complemental strand, 3804229 - 3804128
Alignment:
| Q |
462 |
tcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaa |
561 |
Q |
| |
|
|||||| ||| ||| | |||| ||||||||||||| | || ||| |||||||||||||| ||||| |||| ||||||||||||| |||||||||||||| |
|
|
| T |
3804229 |
tcaatgttgtgatgttgtattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgactttaaa |
3804130 |
T |
|
| Q |
562 |
ac |
563 |
Q |
| |
|
|| |
|
|
| T |
3804129 |
ac |
3804128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 630
Target Start/End: Complemental strand, 3802752 - 3802629
Alignment:
| Q |
503 |
attaatttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttat |
602 |
Q |
| |
|
||||||||||| || |||| ||||| |||| |||||| ||| ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| || |
|
|
| T |
3802752 |
attaatttgggctagcatgcacttcttccatttgttat---ttagattttgactttaaaatcatgtgaagatacaattcgttttgttttcctatttt-at |
3802657 |
T |
|
| Q |
603 |
gaaaatgcaagttcttgattgagtgtta |
630 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
3802656 |
gaaaatgcaacctcttgattgagtgtta |
3802629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 630
Target Start/End: Original strand, 50668040 - 50668147
Alignment:
| Q |
523 |
acttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaa-ttatttttgctttcctgtttttatgaaaatgcaagttcttgat |
621 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||||||| ||| ||| |||||||||| || ||||||||| ||| |||||||||||||||| |||| || |
|
|
| T |
50668040 |
acttcgtccatatgtcatgatttaaattttgactttagaaccatgtgaagatacaatttttttttgcttcactg-ctttatgaaaatgcaagctcttaat |
50668138 |
T |
|
| Q |
622 |
tgagtgtta |
630 |
Q |
| |
|
||| ||||| |
|
|
| T |
50668139 |
tgaatgtta |
50668147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 3802015 - 3801912
Alignment:
| Q |
202 |
ttatttgatcaaaacattaaacagaattggctaaagagcattgtttaaatacaagcaaaagtgaagttgctaagaggcagaaagtaagaagcacaaagag |
301 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||| | | ||| | | |||| ||| ||| |||||| ||| |||||| | ||||||||||| |
|
|
| T |
3802015 |
ttatttgatcaaaacattaatcagaatttgctaaagagcatcgctcaaaaaacataaaaaatgatgttcctaagaagcaaaaagtagggagcacaaagag |
3801916 |
T |
|
| Q |
302 |
aaag |
305 |
Q |
| |
|
|||| |
|
|
| T |
3801915 |
aaag |
3801912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 539 - 630
Target Start/End: Original strand, 50668519 - 50668609
Alignment:
| Q |
539 |
atgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgtta |
630 |
Q |
| |
|
|||||||| |||||||||||| || ||| ||| ||| |||| |||||||||| ||| ||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
50668519 |
atgatttagattttgactttagaagcatgtgaaaatagaattctttttgctttactgcttt-atgaaaatgcaagctcttgatcgagtgtta |
50668609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 440 - 496
Target Start/End: Complemental strand, 3803650 - 3803594
Alignment:
| Q |
440 |
aaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttctttgc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | || | |||||||||||| |
|
|
| T |
3803650 |
aaaaggagaaagtaagttttactcaatgccgtaatgttgtaatactatgttctttgc |
3803594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 508
Target Start/End: Original strand, 50669223 - 50669270
Alignment:
| Q |
461 |
ctcaatgctgtaatggtatattgatatgttctttgcagttaaattaat |
508 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||||||||| ||||||| |
|
|
| T |
50669223 |
ctcaatgctgtaatgttctattgatgtgttctttgcagttgaattaat |
50669270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 541 - 620
Target Start/End: Complemental strand, 52806429 - 52806350
Alignment:
| Q |
541 |
gatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttga |
620 |
Q |
| |
|
|||||| |||||||||||| ||| ||| |||||| ||||| ||||| ||||| |||||||||||| ||| ||| |||||| |
|
|
| T |
52806429 |
gatttagattttgactttagaacaatgtgaagatgcaattcttttttctttcttgtttttatgaacatggaagctcttga |
52806350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 623
Target Start/End: Complemental strand, 5806 - 5721
Alignment:
| Q |
537 |
ttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattg |
623 |
Q |
| |
|
||||||||||||| ||||||||| |||| || | |||||||||| |||||| |||| || ||||||||||||| || ||||||||| |
|
|
| T |
5806 |
ttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaatgaaaactcttgattg |
5721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 537 - 609
Target Start/End: Complemental strand, 8018 - 7947
Alignment:
| Q |
537 |
ttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatg |
609 |
Q |
| |
|
||||||||||||| ||||||||| |||| || | |||||||||| |||||| |||| || ||||||||||||| |
|
|
| T |
8018 |
ttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaatg |
7947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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