View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4576-Insertion-9 (Length: 641)
Name: NF4576-Insertion-9
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576-Insertion-9 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 47 - 641
Target Start/End: Original strand, 28744614 - 28745199
Alignment:
| Q |
47 |
aagagtaacaaacgaattaataaatctataatagatatacatttaatatnnnnnnnntgcatatataataattatgtgaaattatacctgcgatcttaaa |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
28744614 |
aagagtaacaaacgaattaataaatctataatagatatacatttaatataaaaaa--tgcatatataatcat---gtgaaattatacctgcgatcttaaa |
28744708 |
T |
|
| Q |
147 |
ggttgattggagctttgacgttcccaagcaattttgacctataatagatgaaaactaatgatgaagatgaaatgatcatgatctcattaaatataacaat |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
28744709 |
ggttgattggagctttgacgttcccaagcaattttgacctataatagatgaaaactaatgatgaagatgaaatgat---gatcacattaaatataacaat |
28744805 |
T |
|
| Q |
247 |
ttgaatcaagggctttagaagattccaataaatacatgccaacaacaaattctatgaatttactttagaagattataaataaaataataatcatacgtac |
346 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28744806 |
ttgcatcaagggctttagaagattccaataaatacatgccaacaacaaattctaagaatttactttagaagattataaataaa-taataatcatacgtac |
28744904 |
T |
|
| Q |
347 |
catatactccatcgtttctcttactttaggatcaggaacataaattcgttgaagctcaacatttccattgattgttacttgtttttcaacaatctgacca |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28744905 |
catatactccatcgtttctcttactttaggatcaggaacataaattcgttgaagctcaacatttccattaattgttacttgtttttcaacaatctgacca |
28745004 |
T |
|
| Q |
447 |
actggaatcttagtagtttcaactggcttatgcatgtgatgaagacgttctctttcagccttttttgcagtctcacgtagatattggaagactggatcat |
546 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28745005 |
actggaatcttagtagtttcaactggcttgtgcatgtgatgaagacgttctctttcagccttttttgcagtctcacgtagatattgaaagactggatcat |
28745104 |
T |
|
| Q |
547 |
cttcaaatagctctgggtacatagccgatacgtcactacttttgaagttgcttgaagaactatctccttcagttcgacctagagacatcatatca |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28745105 |
cttcaaatagctctgggtacatagccgatacgtcactacttttgaagttgcttgaagaactatctccttcagttcgacctagagacatcatatca |
28745199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 28756411 - 28756519
Alignment:
| Q |
114 |
ataattatgtgaaattatacctgcgatcttaaaggttgattggagctttgacgttcccaagcaattttgacctataatagatgaaaactaatgatgaaga |
213 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
28756411 |
ataattatgtgaaaatatacctgcgaccttaaaggttgattggagctttgatgttcccaagcaatttgaacctataatacatgacaactaatgatgaaga |
28756510 |
T |
|
| Q |
214 |
tgaaatgat |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
28756511 |
tgaaatgat |
28756519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 28756678 - 28756741
Alignment:
| Q |
265 |
aagattccaataaatacatgccaacaacaaattctatgaatttactttagaagattataaataaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28756678 |
aagattccaataaatacatgccaaca-caaattccatgaatttactttagaagattataaataaa |
28756741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 28744519 - 28744560
Alignment:
| Q |
8 |
cctaaaaaactcgttggccaataccaaataattgattagaag |
49 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28744519 |
cctaaaaaactcgttggcaaataccaaataattgattagaag |
28744560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University