View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576_high_11 (Length: 239)
Name: NF4576_high_11
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21182016 - 21181796
Alignment:
| Q |
1 |
tgtaaatataaaaataggtagacttaggttcatcnnnnnnnnaacttcattaccaaatatcataggaacttccttgtggggttttgcaaaaggatatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21182016 |
tgtaaatataaaaataggtagacttaggttcatcttttttgtaacttcattaccaaatatcataggaacttccttgtggggttttgcaaaaggatatgga |
21181917 |
T |
|
| Q |
101 |
acatttttcttgggaagtatgatgagtggaccatagagtgttgatcttagccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattg |
200 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181916 |
acatttttcttgggaagaatgatgagaggaccatagagtgttgatcttaaccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattg |
21181817 |
T |
|
| Q |
201 |
tgtaattgtaaacatagcttt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
21181816 |
tgtaattgtaaacatagcttt |
21181796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 49 - 221
Target Start/End: Complemental strand, 21204732 - 21204560
Alignment:
| Q |
49 |
attaccaaatatcataggaacttccttgtggggttttgcaaaaggatatggaacatttttcttgggaagtatgatgagtggaccatagagtgttgatctt |
148 |
Q |
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||||||||||| ||| ||||||||||||||||||| |||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21204732 |
attaccaaataagataagaacttccttgtggggtttagcaaaaggatattgatcatttttctttggaagtatgatgagtggaccatagagtgttgatctt |
21204633 |
T |
|
| Q |
149 |
agccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagcttt |
221 |
Q |
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| T |
21204632 |
aaccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagcttt |
21204560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 21209020 - 21208857
Alignment:
| Q |
58 |
tatcataggaacttccttgtggggttttgcaaaaggatatggaacatttttcttgggaagtatgatgagtggaccatagagtgttgatcttagccaagat |
157 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||| ||||| | |
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| T |
21209020 |
tatcatgggaacttccttgtggggttttgcaaaaggatatggaacatttttcttgggaagaatgatgagaggtccatagagtgttgaccttaaccaaggt |
21208921 |
T |
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| Q |
158 |
atatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagcttt |
221 |
Q |
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| T |
21208920 |
atatgagcatgccaaaagagtgttcctctttggcctttaatggtgtaattgtaaacatagcttt |
21208857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 46 - 221
Target Start/End: Complemental strand, 21852285 - 21852110
Alignment:
| Q |
46 |
ttcattaccaaatatcataggaacttccttgtggggttttgcaaaaggatatggaacatttttcttgggaagtatgatgagtggaccatagagtgttgat |
145 |
Q |
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||||||||||||||| || |||||||||||||| |||||||||||||| ||| ||||||||||||||||||| || ||||| |||||||| |||||||| |
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| T |
21852285 |
ttcattaccaaatatgattggaacttccttgtgaggttttgcaaaagggtattgaacatttttcttgggaagaataatgagaggaccataaagtgttgac |
21852186 |
T |
|
| Q |
146 |
cttagccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagcttt |
221 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21852185 |
cttaaccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagcttt |
21852110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 22601990 - 22601914
Alignment:
| Q |
113 |
ggaagtatgatgagtggaccatagagtgttgatcttagccaagatatatgagcatgccaaaagagtgttcctctttg |
189 |
Q |
| |
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||||| ||||||| || ||||| || |||| ||||||||| ||||| |||||||||||||| || ||||||||||| |
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| T |
22601990 |
ggaaggatgatgataggtccataaagggttgctcttagccatgatatgtgagcatgccaaaatagggttcctctttg |
22601914 |
T |
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