View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576_high_4 (Length: 391)
Name: NF4576_high_4
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 184 - 384
Target Start/End: Original strand, 53942581 - 53942781
Alignment:
| Q |
184 |
tgattgtttcaccaaatagaaacaaagacacttatcgaaaacaagaacaagaagcagatgcagccacgaaaacaacaacaaaaatgacaatcctttcttc |
283 |
Q |
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| T |
53942581 |
tgatagtttcaccaaatagaaacaaagacacttatcgaaaacaagaacaagaagcagatgcagccacgaacacaacaacaaaaatgacaatcctttcttc |
53942680 |
T |
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| Q |
284 |
actctgttcttttcctccaattcattcatcttatccatttccaaattctgcattaacatgttcaacttctaaccttagaactcaaatccaatcctatgct |
383 |
Q |
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| T |
53942681 |
actctgttcttttcctccaattcattcatcttatccatttccaaattctgcattaacatgttcaatttctaaccttagaactcaaatccaatcctatgct |
53942780 |
T |
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| Q |
384 |
t |
384 |
Q |
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| T |
53942781 |
t |
53942781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 53942437 - 53942572
Alignment:
| Q |
19 |
gatacaccattggataagtcaaacttgcacacaacgatcattccaatggttagaaatcattctctaccatgaccacattaaggtgtcccactatagaaac |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53942437 |
gatacaccattggataagtcaaacttgcacacatcgatcattccaatggttagaaatcattctctaccatgaccacattaaggtgtcccactatagaaac |
53942536 |
T |
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| Q |
119 |
aagttgttatgaaatctaaaaactgaattctcttgt |
154 |
Q |
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| T |
53942537 |
aagttgttatgaaatctaaaaactgaattctcttgt |
53942572 |
T |
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