View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576_high_6 (Length: 358)
Name: NF4576_high_6
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 388633 - 388971
Alignment:
| Q |
1 |
atgattttgatggtgattatgataatgatgagtttttgttgtgtctggaacaccgcatcttggtgtgatcatttgagaaactgtgttcgaatcgagttta |
100 |
Q |
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| T |
388633 |
atgattttgatggtgattatgataatgatgagtttttgttgtgtctggaacaccgcatcttggtgtgatcatttgagaaactgtattcgaatcgagttta |
388732 |
T |
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| Q |
101 |
ccggttacttggagtccaagatttctttggtatttgatgatagctgattcaaaattcgaatcaaatttgtcgctgaatgtgtcattgtttttaatgtacc |
200 |
Q |
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| T |
388733 |
ccggttacttggagtccaagatttctttggtatttgatgatagctgattcaaaattcgaatcaaatttgtcgctgaatgtgtcattgtttttaatgtacc |
388832 |
T |
|
| Q |
201 |
cgaaacgagataggtatcttttgaactgtgatattcctgtgatgttgttgcctctgacagaattggtgaagctatgaatgtcatgatttgtgatggatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
388833 |
cgaaacgagataggtatcttttgaactgtgatattcctgtgatgttgttgcctctgacagcattggtgaagctatgaatgtcatgatttgagatggatat |
388932 |
T |
|
| Q |
301 |
tttggaagcaatgtgtgaagatgatgataatgtgaggag |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
388933 |
tttggaagcaatgtgtgaagatgatgataatgtgaggag |
388971 |
T |
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