View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576_high_7 (Length: 341)
Name: NF4576_high_7
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 17435167 - 17435489
Alignment:
| Q |
1 |
cacctttcttgctggttagatttcttgctagttatgcatcttacgtttgcatcaggtcggcgaataaagcaataacgtattctcatgtcacgattgtata |
100 |
Q |
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| T |
17435167 |
cacctttcttgctggttagatttcttgctagttatgcatcttacgtttgcatcaggtcggtgaataaagcaataacgtattctcatgtcacgattgtata |
17435266 |
T |
|
| Q |
101 |
gcacaaattgtaatggaggctgacatggtatatgcatgcctatgaaagccaactcttaatgcttgttatacgtctaacgttttgattatcatccacgtta |
200 |
Q |
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| T |
17435267 |
gcacaaattgtaatggaggctgacatggtatatgcatgcctatgaaagccaactcttaatgcttgttatacgtctaacgttttgattatcatccacgtta |
17435366 |
T |
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| Q |
201 |
atttcactatactaactttacaccatttggtacgcaacttcccttttccatgattagttttgcttcttcatcggtggctgaagctcacacattttacatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17435367 |
atttcactatactaactttacaccatttggtacgcaacttcccttttccatgattagttttgcttcttcattggtggctgaagctcacacattttacatg |
17435466 |
T |
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| Q |
301 |
tagagaagtgacgtgtacggggt |
323 |
Q |
| |
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| T |
17435467 |
tagagaagtggggtgtgcggggt |
17435489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 17430343 - 17430424
Alignment:
| Q |
56 |
gtcggcgaataaagcaataacgtattctcatgtcacgattgtatagcacaaattgtaatggaggctgacatggtatatgcatgc |
139 |
Q |
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| T |
17430343 |
gtcggtgaataaagcaataacgtatt-tcctgttatgatttcatagcacaaattgtaatggaagctggcat-atatatgcatgc |
17430424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 28715800 - 28715751
Alignment:
| Q |
274 |
gtggctgaagctcacacattttacatgtagagaagtgacgtgtacggggt |
323 |
Q |
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| T |
28715800 |
gtggctgaagctcacacattttaaatgtggagaagtggagtgtccggggt |
28715751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 30305909 - 30305860
Alignment:
| Q |
274 |
gtggctgaagctcacacattttacatgtagagaagtgacgtgtacggggt |
323 |
Q |
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| T |
30305909 |
gtggctggagctcacacattttaaatgtggagaagtgaggtgtccggggt |
30305860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 13763871 - 13763835
Alignment:
| Q |
274 |
gtggctgaagctcacacattttacatgtagagaagtg |
310 |
Q |
| |
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| T |
13763871 |
gtggctgaagctcacacattttaaatgtagagaagtg |
13763835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 27094289 - 27094331
Alignment:
| Q |
274 |
gtggctgaagctcacacattttacatgtagagaagtgacgtgt |
316 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||| |||| |
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| T |
27094289 |
gtggttgaagctcacacattttaaatgtagagaagtgaggtgt |
27094331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 3229674 - 3229710
Alignment:
| Q |
274 |
gtggctgaagctcacacattttacatgtagagaagtg |
310 |
Q |
| |
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| T |
3229674 |
gtggctgaagctcacacattttaaatgtaaagaagtg |
3229710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 29646716 - 29646748
Alignment:
| Q |
279 |
tgaagctcacacattttacatgtagagaagtga |
311 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
29646716 |
tgaagctcacacattttaaatgtagagaagtga |
29646748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 39799990 - 39800026
Alignment:
| Q |
274 |
gtggctgaagctcacacattttacatgtagagaagtg |
310 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||| |
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| T |
39799990 |
gtggctgaagctcacacattttaaatgtggagaagtg |
39800026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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