View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576_low_1 (Length: 628)
Name: NF4576_low_1
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 49693973 - 49694564
Alignment:
| Q |
1 |
aatccgaactatctctttttgactcttgacttagtgtgtttagctccatagtagcctcttcgtttacattgtctccaaagttaaacgtttccgcattctc |
100 |
Q |
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| T |
49693973 |
aatccgaactatctctttttgactcttgacttactgtgtttagctccatagtagcctcttcgtttacattgtctccaaagttaaacgtttccgcattctc |
49694072 |
T |
|
| Q |
101 |
atgtgaatggtaatcacaaaacaacccatcttttagaataaaatctaaaccagtttcagacaaaccatttttcaaatatttacactcttcaaagagtgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49694073 |
gtgtgaatggtaatcacaaaacaacccatcttttagaataaaatctaaaccagtttcagacaaaccatttttcaaatatttacactcttcaaagagtgca |
49694172 |
T |
|
| Q |
201 |
ggatcagaaagttcagaatactcaacaccctgaatttcattaccttcagaaacaccatcattggattcaaaaccaacagaagaatcatgcaacatatctt |
300 |
Q |
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| T |
49694173 |
ggatcagaaagttcagaatactcaacaccctgaatttcattaccttcagaaacaccatcattggattcaaaaccaacagaagaatcatgcaacatatctt |
49694272 |
T |
|
| Q |
301 |
ttgagtcatctacatagtaagatacgcttaccagtttctcactctcgcattcttgatgagaagcagcatcactttgacctccattagttgcaatactttg |
400 |
Q |
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||||||| |||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49694273 |
ttgagtcgtctacataatcagttacgcttaccagtttctcactctcgcattcttgatgagaagcaacatcactttgacctccattagttgcaatactttg |
49694372 |
T |
|
| Q |
401 |
aatcgttgtagtattatcttcaacattttcttggcaatgttccaaaaaatattcaatattttcatcaaaggcatctgatagagattcacctgtttcagga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49694373 |
aatcgttgtagtattatcttcaacattttcttggcaatgttccaaaaaatattcaatattttcatcaaaggcatctgatagagattcacctgtttcagga |
49694472 |
T |
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| Q |
501 |
ttctgttctaaatagccagcacttgtattatgctccagcattatgctgttgacataaccctcaacatcaaattccaataagctcttggcatt |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
49694473 |
ttctgttctaaatagccagcacttgtattatgctccagcattatgctgttgacataaccctcaacatcaaattccaataagttgttggcatt |
49694564 |
T |
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