View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576_low_13 (Length: 236)
Name: NF4576_low_13
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 9551543 - 9551758
Alignment:
| Q |
10 |
gttgaaaacataaaacacatcttgcatgccctattgttatggtattgg-ctcgatactgttttcaagtat-cagtatcgagaacagtatcatagcaatag |
107 |
Q |
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| T |
9551543 |
gttgaaaacagaaaacacaacttgcatgccttgttgttatggtactgttctcgatactgttttcaagtaaacagtatcgaaaacagtgtcataacaatag |
9551642 |
T |
|
| Q |
108 |
tataatctataaaacactatatcaaataatcatttgttgaaacatgaaaaacaataatgaagag--nnnnnnnnngaactatacataccgcaagagaaat |
205 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
9551643 |
tataatctagaaaacactatatcaaataatcatttgttgaaacatgaaaaacaataatgaagagaaagaaaaaaaaaactagacataccgcaagagaaat |
9551742 |
T |
|
| Q |
206 |
ggaagcgaattgagag |
221 |
Q |
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|||||||||||||||| |
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| T |
9551743 |
ggaagcgaattgagag |
9551758 |
T |
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