View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4576_low_3 (Length: 403)
Name: NF4576_low_3
Description: NF4576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4576_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 6168461 - 6168649
Alignment:
| Q |
23 |
tgatggtgtttggttgattttaatgaaaatttaaatcattaaaaaagaaaggataatgaaattttgaatgagaattccaaattgggaagacgtaaatgaa |
122 |
Q |
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| T |
6168461 |
tgatggtgtttggttgattttaatgaaaatttaaatcattaaaaaagaaaggataatgaaattttgaatgagaattctaaattgggaagacgtaaatgaa |
6168560 |
T |
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| Q |
123 |
tgcctagaacatttcaaggttatgactatgtgtggattaaatatttctcacataaattgtttttccgacctaaaccgtttgtgatcgta |
211 |
Q |
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| T |
6168561 |
tgcctagaacatttcaaggttatgactatgtatggattaaatatttctcacataaattgtttttccgacctaaaccgtttgtaatcgta |
6168649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 208 - 386
Target Start/End: Original strand, 6169654 - 6169830
Alignment:
| Q |
208 |
cgtagttgattgtttttataaatagagagttcaagccctatagaataaaattggagatgcatgcgtaagaaaacaaaagtttgtattnnnnnnnnnnnng |
307 |
Q |
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| T |
6169654 |
cgtatttgattgtttttataaatagagagttcaagccctatagaataaaattggagatgcatgcgtaagaatacaaaagtttgtattaaaaaaaaat--g |
6169751 |
T |
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| Q |
308 |
gaatttgttttttgaggataaacatagaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctg |
386 |
Q |
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| T |
6169752 |
gaatttgttttttgaggataaacatagaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctg |
6169830 |
T |
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