View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4577-Insertion-1 (Length: 1084)
Name: NF4577-Insertion-1
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 18366345 - 18366800
Alignment:
| Q |
7 |
agtaacattttcccggtttaaaatcattctaaagtaagcagtctcgtctgggctgttgttgaagacctacaattatataattaacggaaaaaataaatac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18366345 |
agtaacattttcccggtttaaaatcattctagagtaagcagtctcgtctgggctgttgttgaagacctacaattatataattaatggaaaaaataaatac |
18366444 |
T |
|
| Q |
107 |
tctggaagtagaaatatagcagcacgaaatatcaacaatgaaaaactttataagaggtctgaaaacacaaaatgaatacctgaacaaactgagaacgtcg |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18366445 |
tctgcaagtagaaatatagcagcacgaaatatcaacaatgaaaaactttataagaggtctgaaaacacaaaacgaatacctgaacaaactgagaacgtcg |
18366544 |
T |
|
| Q |
207 |
taagtgaaacataaattgtgggaatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgagacgggaacacaaatct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
18366545 |
taagtgaaacataaattgtgggaatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgagacaggaacacaaattt |
18366644 |
T |
|
| Q |
307 |
atcaatgccttgtccaaccatctgataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcagg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18366645 |
atcaatgccttgtccaaccatctgataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcagg |
18366744 |
T |
|
| Q |
407 |
cacaaaaaacatatcaagctattcagtgagagagaaaagcaggtccacagttctca |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18366745 |
cacaaaaaacatatcaagctattcagtgagagagaaaagcaggtccacagttctca |
18366800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 18371609 - 18372064
Alignment:
| Q |
7 |
agtaacattttcccggtttaaaatcattctaaagtaagcagtctcgtctgggctgttgttgaagacctacaattatataattaacggaaaaaataaatac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18371609 |
agtaacattttcccggtttaaaatcattctagagtaagcagtctcgtctgggctgttgttgaagacctacaattatataattaatggaaaaaataaatac |
18371708 |
T |
|
| Q |
107 |
tctggaagtagaaatatagcagcacgaaatatcaacaatgaaaaactttataagaggtctgaaaacacaaaatgaatacctgaacaaactgagaacgtcg |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18371709 |
tctgcaagtagaaatatagcagcacgaaatatcaacaatgaaaaactttataagaggtctgaaaacacaaaacgaatacctgaacaaactgagaacgtcg |
18371808 |
T |
|
| Q |
207 |
taagtgaaacataaattgtgggaatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgagacgggaacacaaatct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
18371809 |
taagtgaaacataaattgtgggaatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgagacaggaacacaaattt |
18371908 |
T |
|
| Q |
307 |
atcaatgccttgtccaaccatctgataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcagg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18371909 |
atcaatgccttgtccaaccatctgataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcagg |
18372008 |
T |
|
| Q |
407 |
cacaaaaaacatatcaagctattcagtgagagagaaaagcaggtccacagttctca |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18372009 |
cacaaaaaacatatcaagctattcagtgagagagaaaagcaggtccacagttctca |
18372064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 18375899 - 18376354
Alignment:
| Q |
7 |
agtaacattttcccggtttaaaatcattctaaagtaagcagtctcgtctgggctgttgttgaagacctacaattatataattaacggaaaaaataaatac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18375899 |
agtaacattttcccggtttaaaatcattctagagtaagcagtctcgtctgggctgttgttgaagacctacaattatataattaatggaaaaaataaatac |
18375998 |
T |
|
| Q |
107 |
tctggaagtagaaatatagcagcacgaaatatcaacaatgaaaaactttataagaggtctgaaaacacaaaatgaatacctgaacaaactgagaacgtcg |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18375999 |
tctgcaagtagaaatatagcagcacgaaatatcaacaatgaaaaactttataagaggtctgaaaacacaaaacgaatacctgaacaaactgagaacgtcg |
18376098 |
T |
|
| Q |
207 |
taagtgaaacataaattgtgggaatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgagacgggaacacaaatct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
18376099 |
taagtgaaacataaattgtgggaatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgagacaggaacacaaattt |
18376198 |
T |
|
| Q |
307 |
atcaatgccttgtccaaccatctgataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcagg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18376199 |
atcaatgccttgtccaaccatctgataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcagg |
18376298 |
T |
|
| Q |
407 |
cacaaaaaacatatcaagctattcagtgagagagaaaagcaggtccacagttctca |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18376299 |
cacaaaaaacatatcaagctattcagtgagagagaaaagcaggtccacagttctca |
18376354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 465 - 761
Target Start/End: Original strand, 18367221 - 18367518
Alignment:
| Q |
465 |
agcactcacctccgtttccattt-tgaaagacacttggcgtgccatgactatagcagctgcttcttggtcaaatccagaaatcaaatcctacaaaatttt |
563 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18367221 |
agcactcacctccgtttccatttgtgaaagacacttggcgtgccatgactatagcagctgcttcttggtcaaatccagaaatcaaatcctacaaaatttt |
18367320 |
T |
|
| Q |
564 |
acatataactgatataaaacattgatgaattccagaaaatgaatttaatgatgaatttattaaaaacaagtgggnnnnnnnttgtaattacagtaatgaa |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18367321 |
acatataactgatataaaacattgatgaattccagaaaatgaatttaatgatgaatttattaaaaacaagtgggaaaaaaattgtaattacagtaatgaa |
18367420 |
T |
|
| Q |
664 |
tagagtgctcatgtcactagataaatcatatcatactatcgttaactaattgtaaaagttaatgaacataaaactagcattggtcattatccaaacac |
761 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18367421 |
tagagtgatcatgttactagataaatcatatcatactatcgttaactaattgtaaaagttaatgaacataaaactagcattggtcattatccaaacac |
18367518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 465 - 761
Target Start/End: Original strand, 18372485 - 18372782
Alignment:
| Q |
465 |
agcactcacctccgtttccattt-tgaaagacacttggcgtgccatgactatagcagctgcttcttggtcaaatccagaaatcaaatcctacaaaatttt |
563 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18372485 |
agcactcacctccgtttccatttgtgaaagacacttggcgtgccatgactatagcagctgcttcttggtcaaatccagaaatcaaatcctacaaaatttt |
18372584 |
T |
|
| Q |
564 |
acatataactgatataaaacattgatgaattccagaaaatgaatttaatgatgaatttattaaaaacaagtgggnnnnnnnttgtaattacagtaatgaa |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18372585 |
acatataactgatataaaacattgatgaattccagaaaatgaatttaatgatgaatttattaaaaacaagtgggaaaaaaattgtaattacagtaatgaa |
18372684 |
T |
|
| Q |
664 |
tagagtgctcatgtcactagataaatcatatcatactatcgttaactaattgtaaaagttaatgaacataaaactagcattggtcattatccaaacac |
761 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18372685 |
tagagtgatcatgttactagataaatcatatcatactatcgttaactaattgtaaaagttaatgaacataaaactagcattggtcattatccaaacac |
18372782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 912 - 984
Target Start/End: Original strand, 18367680 - 18367754
Alignment:
| Q |
912 |
gtggctgttgatatcattattatttgc-ttttatcctactatgt--acagggaaatagtccttcagtaataagaaa |
984 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
18367680 |
gtggctgttgatatcattattatttgctttttatcctactatgttaaca-ggaaatagtccttcagtaattagaaa |
18367754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Complemental strand, 2976238 - 2975783
Alignment:
| Q |
7 |
agtaacattttcccggtttaaaatcattctaaagtaagcagtctcgtctgggctgttgttgaagacctacaattatataattaacggaaaaaataaatac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2976238 |
agtaacattttcccggtttaaaatcattctaaagtaagcagtctcgtctgggctgttgttgaagacctacaattatataattaacggaaaaaataaatac |
2976139 |
T |
|
| Q |
107 |
tctggaagtagaaatatagcagcacgaaatatcaacaatgaaaaactttataagaggtctgaaaacacaaaatgaatacctgaacaaactgagaacgtcg |
206 |
Q |
| |
|
| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2976138 |
tgtggaagtacagatatagcagcacgaaatatcaacaatgaaaaactttataagaggtctgataacacaaaatgaatacctgaacaaactgagaacgtcg |
2976039 |
T |
|
| Q |
207 |
taagtgaaacataaattgtgggaatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgagacgggaacacaaatct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
2976038 |
caagtgaaacataaattgtgggaatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgaaacgggaacacaaattt |
2975939 |
T |
|
| Q |
307 |
atcaatgccttgtccaaccatctgataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcagg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2975938 |
atcaatgccttgtccaaccatctgataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaatgacatttttcataagcagg |
2975839 |
T |
|
| Q |
407 |
cacaaaaaacatatcaagctattcagtgagagagaaaagcaggtccacagttctca |
462 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2975838 |
cacaaaaaacatatcaagctaatcagtgagagagaaaagcaggtccacagttctca |
2975783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 465 - 761
Target Start/End: Complemental strand, 2975319 - 2975023
Alignment:
| Q |
465 |
agcactcacctccgtttccattttgaaagacacttggcgtgccatgactatagcagctgcttcttggtcaaatccagaaatcaaatcctacaaaatttta |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2975319 |
agcactcacctccgtttccattttgaaagacacttggcgtgccatgactatagcagctgcttcttggtcaaatccagaaatcaaatcctacaaaatttta |
2975220 |
T |
|
| Q |
565 |
catataactgatataaaacattgatgaattccagaaaatgaatttaatgatgaatttattaaaaacaagtgggnnnnnnnttgtaattacagtaatgaat |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2975219 |
catataactgatataaaacattgatgaattccagaaaatgaatttaatgatgaatttattaaaaacaagtgggaaaaaaattgtaattacagtaatgaat |
2975120 |
T |
|
| Q |
665 |
agagtgctcatgtcactagataaatcatatcatactatcgttaactaattgtaaaagttaatgaacataaaactagcattggtcattatccaaacac |
761 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2975119 |
agagtgctcatgttactagataaatcatatcatactatcgttaactaattgtaaaagttaatgaacataaaactagcattggtcattatccaaacac |
2975023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 868 - 984
Target Start/End: Complemental strand, 2973810 - 2973691
Alignment:
| Q |
868 |
ttcaaattctacaattattgttataaatcgtatcattgaattaa-gtggctgttgatatcattattatttgc-ttttatcctactatgt--acagggaaa |
963 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||||||||||||||| ||| ||| | |
|
|
| T |
2973810 |
ttcaaattctacaattattgttataaatcgtatcatagaattaaggtggctgtcgatatcattattatttgctttttatcctactatgttaaca-ggaga |
2973712 |
T |
|
| Q |
964 |
tagtccttcagtaataagaaa |
984 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
2973711 |
tagtccttcagtaattagaaa |
2973691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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