View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577-Insertion-10 (Length: 785)
Name: NF4577-Insertion-10
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577-Insertion-10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 523 - 785
Target Start/End: Complemental strand, 4964262 - 4963999
Alignment:
| Q |
523 |
atctgaagtttgtttatgaagttgttggtgcaagtggcttctattgcattaagttgaagtttgattattaaatatttagtctattttggaaaattatagc |
622 |
Q |
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| T |
4964262 |
atctgaagtttgtttatgaagttgttggtgcaagtggcttctattgtattaagttgaagtttgattattaaatatttaatctattttggaaaattatagc |
4964163 |
T |
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| Q |
623 |
tttaacatcccatatattcaagatacattgaagaaagatggtttgggaaatttgttgaagcttgcctt-gaggaaatggtggttgtttatattgataaac |
721 |
Q |
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| T |
4964162 |
tttaacatcccatatattcaaggtacattgaagaaagatggtttgggaaatttgttgaagcttgccttagaggaaatggtggttgtttatattgataaac |
4964063 |
T |
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| Q |
722 |
ttttaacacaggtctcttcatttaataaaacaattgttggttctttagtattggcttgtacgta |
785 |
Q |
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| T |
4964062 |
ttttaacacaggtctcttcatttaataaaacaattgttggttcttctgtattggcttgtacgta |
4963999 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 635 - 734
Target Start/End: Original strand, 8301890 - 8301989
Alignment:
| Q |
635 |
tatattcaagatacattgaagaaagatggtttgggaaatttgttgaagcttgccttgaggaaatggtggttgtttatattgataaacttttaacacaggt |
734 |
Q |
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| T |
8301890 |
tatattcaaggtacattgaagaaagatctttcaggagatttgttgaagcttgcctagaagaaacagtggttgtatatgttgaccgtcttttaacacaggt |
8301989 |
T |
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