View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4577-Insertion-11 (Length: 717)
Name: NF4577-Insertion-11
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577-Insertion-11 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0831 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 6 - 596
Target Start/End: Complemental strand, 4878758 - 4878151
Alignment:
| Q |
6 |
caaatatatatcctctcacagagcatactgtattactatttactgttagtacataatatttctgagcttgattgattaagaaatcaaatagaatgtacaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878758 |
caaatatatatcctctcacagagcatactgtattactatttactgttagtacataatatttctgagcttgattgattaagaaatcaaatagaatgtacaa |
4878659 |
T |
|
| Q |
106 |
cccagctaatttacttggaacatacaaataaataaaataaatcagacatggttccatgaggttcaaaaagagatgttttattcattatattgacaaaa-g |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4878658 |
cccagctaatttacttggaacatacaaataaataaaataaatcagacatggttccatgaggttcaaaaagagatgttttattcattatattgacaaaaag |
4878559 |
T |
|
| Q |
205 |
tttccaaaatgtacgctatttctacaagaa----------------gtaaagaccaaagaccatacatacaattggaatcataagaacaatatgcaatat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878558 |
tttccaaaatgtacgctatttctacaagaaaattcaaagccattcagtaaagaccaaagaccatacatacaattggaatcataagaacaatatgcaatat |
4878459 |
T |
|
| Q |
289 |
gaaagagagcagagcattgaaataaaaatggtaaagaaaggttcatatcacaaatgtgtctttctcgtacactaagcatgcccatttgtattgaaatggc |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878458 |
gaaagagagcagagcattgaaataaaaatggtaaagaaaggttcatatcacaaatgtgtctttctcgtacactaagcatgcccatttgtattgaaatggc |
4878359 |
T |
|
| Q |
389 |
ttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgggtgaacgctataaacttgggatgcagaaacacc |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4878358 |
ttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgggtgaacgctataaacttgggatacagaaacacc |
4878259 |
T |
|
| Q |
489 |
taattcctaattcggcgtaacggacgaatgttttgcttataaattgcaaagtgacaacaaaaatacccctctttaacacccaaatcttcaattgtgtggg |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4878258 |
taattcctaattcggcgtaacggacgaatgttttgcttataaattgcaaagtgacaacaaaaatactcctctttaacacccaaatcttcaattgtgtggg |
4878159 |
T |
|
| Q |
589 |
tatttaaa |
596 |
Q |
| |
|
|||||||| |
|
|
| T |
4878158 |
tatttaaa |
4878151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 64 - 717
Target Start/End: Complemental strand, 44186801 - 44186148
Alignment:
| Q |
64 |
tttctgagcttgattgattaagaaatcaaatagaatgtacaacccagctaatttacttggaacatacaaataaataaaataaatcagacatggttccatg |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
44186801 |
tttctgagcttgattgattaagaaatcaaatagcatgtccaacccaccta---tacttggaacatactaataaataaaataaat----------tccatg |
44186715 |
T |
|
| Q |
164 |
aggttcaaaaagagatgttttattcattatattgacaaaagtttccaaaatgtacgctatttctacaagaa---------------gtaaagaccaaaga |
248 |
Q |
| |
|
||||||||| | |||| |||||||||||||| || ||| |||||||||||||||| ||||||||| | ||| |||||||| ||||| |
|
|
| T |
44186714 |
aggttcaaacaaagatattttattcattataatggcaacagtttccaaaatgtacactatttctataggaaaattgagggcattcagtaaagacaaaaga |
44186615 |
T |
|
| Q |
249 |
ccatacatacaattggaatcataagaacaatatgcaatatgaaagagagcagagcattgaaataaaaatggtaaagaaaggttcatatcacaaatgtgtc |
348 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||| || |||||| || ||||||||||||||| |||||||||| ||||||||||||| |||||| | |
|
|
| T |
44186614 |
ccatgcatacaattggagtcaaaagaacaatatgcagtaggaaagatagaagagcattgaaataataatggtaaaggaaggttcatatcataaatgtatt |
44186515 |
T |
|
| Q |
349 |
tttctcgtacactaagcatgcccatttgtattgaaatggcttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaag |
448 |
Q |
| |
|
| | | | || |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44186514 |
atacaagaaaac--agcaagcccatttctattgaaatggcttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaag |
44186417 |
T |
|
| Q |
449 |
ctcttgggtgaacgctataaacttgggatgcagaaacacctaattcctaattcggcgtaacggacgaatgttttgcttataaattgcaaagtgacaacaa |
548 |
Q |
| |
|
|||||| |||||||||||||| || |||| ||||||||||||| ||||||||||||| |||| | ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
44186416 |
ctcttgagtgaacgctataaagtttggatacagaaacacctaactcctaattcggcgaaacgaaagaaggtttttcttataaattgcaaagtgacaacaa |
44186317 |
T |
|
| Q |
549 |
aaatacccctctttaacacccaaatcttcaattgtgtgggtatttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcaccnnnnn |
648 |
Q |
| |
|
|||||| || |||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44186316 |
aaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcaacttttt |
44186217 |
T |
|
| Q |
649 |
nncctgctccaacaggacgctccacgctaggcaagggtccgataataaagagtttagtccatgattctc |
717 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44186216 |
ttccttctccaacaggacactccacgctaggcaagggtccgacaataaagagtttagtccatgattctc |
44186148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 403 - 717
Target Start/End: Complemental strand, 1327612 - 1327301
Alignment:
| Q |
403 |
cttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgggtgaacgctataaacttgggatgcagaaacacctaattcctaattcg |
502 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
1327612 |
cttggtaataaaatcttaaatcctaacaacaagaatactcataaagctcttgggtgaaagctataaacttgggatacaaaaacacctaattcctaattcc |
1327513 |
T |
|
| Q |
503 |
gcgtaacggacgaatgttttgcttataaattgcaaagtgacaacaaaaatacccctctttaacacccaaatcttcaattgtgtgggtatttaaatcaaaa |
602 |
Q |
| |
|
| |||| | | ||||| |||| ||||||||||||||||| ||||| | || ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1327512 |
gataaacgaaag---gtttttcttacaaattgcaaagtgacaaaaaaaaggctcccctttaacacccaaatcttcaattgtttgggtatttaaatcaaaa |
1327416 |
T |
|
| Q |
603 |
caagctatttcattgtcattttttataaagaatatatcaccnnnnnnncctgctccaacaggacgctccacgctaggcaagggtccgataataaagagtt |
702 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| || |||||||||| |||||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
1327415 |
caagctacttcattgtcattttttagaaagaatatatcgcctttttttcctgctccaataggacgctccacgccaggcaagggtccgacaatgaagagtt |
1327316 |
T |
|
| Q |
703 |
tagtccatgattctc |
717 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1327315 |
tagtccatgattctc |
1327301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 592 - 717
Target Start/End: Complemental strand, 4877965 - 4877840
Alignment:
| Q |
592 |
ttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcaccnnnnnnncctgctccaacaggacgctccacgctaggcaagggtccgat |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4877965 |
ttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcacctttttttcctgctccaacaggacgctccacgctaggcaagggtccgat |
4877866 |
T |
|
| Q |
692 |
aataaagagtttagtccatgattctc |
717 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4877865 |
aataaagagtttagtccatgattctc |
4877840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 1327944 - 1327839
Alignment:
| Q |
67 |
ctgagcttgattgattaagaaatcaaatagaatgtacaacccagctaatttacttggaacatacaaataaataaaataaatcagacatggttccatgagg |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |
|
|
| T |
1327944 |
ctgagcttgattgattaagaaatcaaatagcatgtacaacccagctaatttacttggaacatacaaataattaaaataaatcagacatggttccgttagg |
1327845 |
T |
|
| Q |
167 |
ttcaaa |
172 |
Q |
| |
|
|||||| |
|
|
| T |
1327844 |
ttcaaa |
1327839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 259 - 361
Target Start/End: Complemental strand, 1327795 - 1327693
Alignment:
| Q |
259 |
aattggaatcataagaacaatatgcaatatgaaagagagcagagcattgaaataaaaatggtaaagaaaggttcatatcacaaatgtgtctttctcgtac |
358 |
Q |
| |
|
||||||||||| |||| |||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
1327795 |
aattggaatcaaaagaccaatatgcaataggtaagagagtagagcattgaaataataatggtaaagaaaggttcatatcacaaacgtttctttctcgtac |
1327696 |
T |
|
| Q |
359 |
act |
361 |
Q |
| |
|
||| |
|
|
| T |
1327695 |
act |
1327693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 1329053 - 1328887
Alignment:
| Q |
457 |
tgaacgctataaacttgggatgcagaaacacctaattcctaattcggcgtaacggacgaatgttttgcttataaattgcaaagtgacaacaaaaataccc |
556 |
Q |
| |
|
|||| ||| |||||||||||| || | ||| ||||||| ||||||||| | ||| ||| |||| |||||||||||| | | |||||| ||| || | |
|
|
| T |
1329053 |
tgaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaagactc |
1328954 |
T |
|
| Q |
557 |
ctctttaacacccaaatcttcaattgtgtgggtatttaaatcaaaacaagctatttcattgtcattt |
623 |
Q |
| |
|
|||||||||||| | |||||||| | |||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
1328953 |
acctttaacacccataccttcaattatttgggtatttaaatcaaaacaggctaatccattgtcattt |
1328887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 44187615 - 44187570
Alignment:
| Q |
559 |
ctttaacacccaaatcttcaattgtgtgggtatttaaatcaaaaca |
604 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
44187615 |
ctttaacacccatatcttcaattgtttgggcatttaaatcaaaaca |
44187570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 1327831 - 1327800
Alignment:
| Q |
199 |
caaaagtttccaaaatgtacgctatttctaca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1327831 |
caaaagtttccaaaatgtacgctatttctaca |
1327800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 406
Target Start/End: Complemental strand, 1327657 - 1327623
Alignment:
| Q |
372 |
atttgtattgaaatggcttcagaacattcaacttg |
406 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
1327657 |
atttgtattgaaatggcttcagaatattcaacttg |
1327623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 361
Target Start/End: Complemental strand, 44187933 - 44187843
Alignment:
| Q |
271 |
aagaacaatatgcaatatgaaagagagcagagcattgaaataaaaatggtaaagaaaggttcatatcacaaatgtgtctttctcgtacact |
361 |
Q |
| |
|
||||||||||| ||||| |||||||| | | ||| |||||||||||||||||||| | | ||||| | |||||| ||||| || |||||| |
|
|
| T |
44187933 |
aagaacaatatacaatagaaaagagagaaaaacatagaaataaaaatggtaaagaacgatacatatgataaatgtttctttttcatacact |
44187843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 509 - 717
Target Start/End: Complemental strand, 26532593 - 26532385
Alignment:
| Q |
509 |
cggacgaatgttttgcttataaattgcaaagtgacaacaaaaatacccctctttaacacccaaatcttcaattgtgtgggtatttaaatcaaaacaagct |
608 |
Q |
| |
|
|||| ||| ||||| || ||||||| |||||| |||| | ||| || || |||||||||| ||||| |||||| | |||||||||||||||||||||| | |
|
|
| T |
26532593 |
cggaagaaagtttttctgataaatttcaaagtcacaatataaagactcccctttaacaccaaaatcatcaattctttgggtatttaaatcaaaacaagtt |
26532494 |
T |
|
| Q |
609 |
atttcattgtcattttttataaagaatatatcaccnnnnnnncctgctccaacaggacgctccacgctaggcaagggtccgataataaagagtttagtcc |
708 |
Q |
| |
|
| | ||| |||| ||| | ||||||| |||||| |||||||||| ||||||| || ||||||||||||||| || ||||||||||||| |
|
|
| T |
26532493 |
agtccatcatcatctttaacgaagaatagatcacctttttttcctgctccaagaggacgccaaacattaggcaagggtccgactatgaagagtttagtcc |
26532394 |
T |
|
| Q |
709 |
atgattctc |
717 |
Q |
| |
|
||||||||| |
|
|
| T |
26532393 |
atgattctc |
26532385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 559 - 643
Target Start/End: Original strand, 1191 - 1275
Alignment:
| Q |
559 |
ctttaacacccaaatcttcaattgtgtgggtatttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcacc |
643 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||||||||||| | |||||| || ||| | || || ||||||||||| |
|
|
| T |
1191 |
ctttaacacccaaatcttcaattgtttgggtaattaagtcaaaacaagccaattcattctcgtttctaatcaacaatatatcacc |
1275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 716
Target Start/End: Complemental strand, 6432789 - 6432636
Alignment:
| Q |
563 |
aacacccaaatcttcaattgtgtgggtatttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcaccnnnnnnncctgctccaaca |
662 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||| ||| ||| ||| ||| || | | |||||| |||||| ||| ||||| | |
|
|
| T |
6432789 |
aacacccaaattttcaattgtttgggtgtttaaatcaaaacagactagttctttgcaattcttaagacagaatagatcacccttctttcctattccaata |
6432690 |
T |
|
| Q |
663 |
ggacgctccacgctaggcaagggtccgataataaagagtttagtccatgattct |
716 |
Q |
| |
|
||||| | |||||||| |||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
6432689 |
ggacgacctacgctaggtaagggtccgacaatgaagagtttggtccatgattct |
6432636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 637
Target Start/End: Original strand, 42564860 - 42564921
Alignment:
| Q |
576 |
tcaattgtgtgggtatttaaatcaaaacaagctatttcattgtcattttttataaagaatat |
637 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||| ||| |||||| | |||||||| |
|
|
| T |
42564860 |
tcaattgtgttggtatttaaatcaatccaagctagttcatcgtctttttttcttaagaatat |
42564921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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