View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4577-Insertion-12 (Length: 625)

Name: NF4577-Insertion-12
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4577-Insertion-12
NF4577-Insertion-12
[»] chr1 (10 HSPs)
chr1 (8-482)||(8526784-8527258)
chr1 (501-625)||(8526671-8526795)
chr1 (24-234)||(17128498-17128713)
chr1 (149-232)||(16909037-16909120)
chr1 (154-223)||(42476339-42476408)
chr1 (149-189)||(52626564-52626604)
chr1 (147-188)||(44675154-44675195)
chr1 (157-234)||(45718346-45718423)
chr1 (157-221)||(2653732-2653796)
chr1 (149-189)||(26260809-26260849)
[»] chr7 (6 HSPs)
chr7 (149-234)||(9628212-9628297)
chr7 (193-230)||(24905112-24905149)
chr7 (3-63)||(10061800-10061860)
chr7 (24-69)||(24904961-24905006)
chr7 (149-218)||(35516721-35516790)
chr7 (24-68)||(9628372-9628416)
[»] chr4 (9 HSPs)
chr4 (149-234)||(13608949-13609034)
chr4 (160-224)||(32293650-32293714)
chr4 (24-95)||(22495237-22495308)
chr4 (154-189)||(37772970-37773005)
chr4 (149-234)||(13137093-13137178)
chr4 (151-188)||(27270009-27270046)
chr4 (24-68)||(13608830-13608874)
chr4 (154-222)||(22495373-22495441)
chr4 (157-221)||(45637456-45637520)
[»] chr2 (8 HSPs)
chr2 (24-114)||(5690885-5690971)
chr2 (154-223)||(36178888-36178957)
chr2 (149-222)||(45131127-45131200)
chr2 (157-230)||(12606878-12606951)
chr2 (149-189)||(27009256-27009296)
chr2 (157-227)||(29691133-29691203)
chr2 (149-234)||(38409000-38409085)
chr2 (149-189)||(40638804-40638844)
[»] chr5 (8 HSPs)
chr5 (24-234)||(16518256-16518473)
chr5 (149-233)||(8006788-8006872)
chr5 (154-234)||(25942621-25942701)
chr5 (150-230)||(32246913-32246993)
chr5 (23-63)||(8006957-8006997)
chr5 (3-63)||(8488234-8488294)
chr5 (150-230)||(18908558-18908638)
chr5 (24-100)||(25942486-25942562)
[»] chr6 (5 HSPs)
chr6 (161-233)||(1767083-1767155)
chr6 (157-221)||(18673390-18673454)
chr6 (149-236)||(11298593-11298680)
chr6 (157-234)||(29599177-29599254)
chr6 (24-60)||(2189551-2189587)
[»] chr8 (1 HSPs)
chr8 (154-215)||(43776250-43776311)
[»] chr3 (4 HSPs)
chr3 (149-234)||(23050128-23050213)
chr3 (155-223)||(27302371-27302439)
chr3 (149-234)||(41878705-41878790)
chr3 (24-60)||(3694604-3694640)


Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 8527258 - 8526784
Alignment:
Q  8 aaaaatgccttcatgacacaagatgtgctaaggaagaaacaccaaaattcaaacagtgtcaagactatatttacaaggcaaagccaaaccgcaaaagtgg 107  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  8527258 aaaaaggccttcctgacataagatgtgctaaggaagaaacaccaaaattcaaagagtgtcaagactatatttacaaggcaaagccaaaccgcaaaagcgg 8527159  T
Q  108 acaaaaacgaaagaaaccaacaaaatcaatgtctgaaaagataaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttc 207  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||    
T  8527158 acaaaaacgaaagaaactaacaaaaccaatgtctgaaaaggtaaatggactaagtcaccaaccatgataattgaagggaagattgacgtatttccccttc 8527059  T
Q  208 agccacatgaaagttaacgacttaatcatcttaatggtcatcactattagagcttattctttcttttagcaaatttttaatattgttttttcaggaaaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8527058 agccacatgaaagttaacgacttaatcatcttaatggtcattactattagagcttattctttcttttagcaaatttttaatattgttttttcaggaaaca 8526959  T
Q  308 agccctggcaactctcatagggcattcataggataaatggggtccaccgcataagcataatctcaatgataattgtgacatacctcgttttctatctgca 407  Q
    ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8526958 agctctcgcaactctcatagggcattcattggataaatggggtccaccgcataagcataatctcaatgataattgtgacatacctcgttttctatctgca 8526859  T
Q  408 tcaagatgatgtccatgtctaccataatgggtcctccatcgtaccacaaactatcctttatcatctcttcaaatc 482  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  8526858 tcaagatgatgtccatgtctaccataatggatcctccatcgtaccacaaattatcctttatcatctcttcaaatc 8526784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 501 - 625
Target Start/End: Complemental strand, 8526795 - 8526671
Alignment:
Q  501 tctcttcaaatcttatagtgcagtcatcaacaaacatgccactgtgtcacaagcagttaaactctcgttccttccggcctaacacaaaatttgtgaagaa 600  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8526795 tctcttcaaatcttatagtgcagtcatcaacaaatatgccactgtgtcacaagcagttaaactctcgttccttccagcctaacacaaaatttgtgaagaa 8526696  T
Q  601 aacaatttctaaacatgtaaccccc 625  Q
    ||||| |||||||||||||||||||    
T  8526695 aacaacttctaaacatgtaaccccc 8526671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 17128713 - 17128498
Alignment:
Q  24 cacaagatgtgctaaggaagaaacaccaaaattcaaacagtgtcaagactatatttacaag----gcaaagccaaaccgcaaaagtggacaaaaacgaaa 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    |||||||||||||||||||| |  ||| || ||||    
T  17128713 cacaagatgtgctaaggaagaaacaccaaaatccaaacagtgtcaagactataattacaagctaggcaaagccaaaccgcaaaagcgaccaacaa-gaaa 17128615  T
Q  120 gaaaccaacaa---aatcaatgtctgaaaagataaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatg 216  Q
    ||||| |||||   || ||||| || | | | |||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  17128614 gaaac-aacaatttaaccaatgcctaacatggtaaaaggactaagccaccaacaatggtaattgaagggaagattgacgtatttccccttcagccacatg 17128516  T
Q  217 aaagttaacgacttaatc 234  Q
    ||||||||||||||||||    
T  17128515 aaagttaacgacttaatc 17128498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 16909037 - 16909120
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaa 232  Q
    |||| |||||||||||||||||| | ||||||| ||  ||| ||||| |||||||||||| |||||| |||||||  |||||||    
T  16909037 taaacggactaagccaccaaccatgataattgagggagagactgacgaatttccccttcaaccacatcaaagttagagacttaa 16909120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 42476408 - 42476339
Alignment:
Q  154 ggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagtta 223  Q
    ||||| |||||||||||| | ||||||| ||||||| |||||| ||||||||||| |||| || ||||||    
T  42476408 ggacttagccaccaaccatgataattgaggggaagactgacgtgtttccccttcaaccacctgtaagtta 42476339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 52626604 - 52626564
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaaga 189  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  52626604 taaatggactaagccaccaaccatgataattgaagggaaga 52626564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 44675195 - 44675154
Alignment:
Q  147 gataaatggactaagccaccaaccacggtaattgaagggaag 188  Q
    |||||| |||||||||||||||||| | ||||||||||||||    
T  44675195 gataaacggactaagccaccaaccatgataattgaagggaag 44675154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 45718423 - 45718346
Alignment:
Q  157 ctaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaatc 234  Q
    ||||||||||||||| | ||||| ||||||||| || |  |||||  |||||||||| | ||||||||| ||||||||    
T  45718423 ctaagccaccaaccatgataattaaagggaagagtggcaaatttcatcttcagccacttcaaagttaacaacttaatc 45718346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 2653732 - 2653796
Alignment:
Q  157 ctaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagt 221  Q
    ||||||||||||||| | ||||||| ||||| | |||| | ||||||||||| |||| |||||||    
T  2653732 ctaagccaccaaccatgttaattgaggggaatactgacatgtttccccttcaaccacgtgaaagt 2653796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 26260849 - 26260809
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaaga 189  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  26260849 taaatggactaagccaccacccatgataattgaagggaaga 26260809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 9628297 - 9628212
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaatc 234  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||  ||||||||||    
T  9628297 taaacggactaagccaccaaccatggtaattgaagggaagattgacgtatttccctttcaaccacatgaaagttgtcgacttaatc 9628212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 24905112 - 24905149
Alignment:
Q  193 acgtatttccccttcagccacatgaaagttaacgactt 230  Q
    |||||||||||||||| |||||||||||||||||||||    
T  24905112 acgtatttccccttcaaccacatgaaagttaacgactt 24905149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 10061800 - 10061860
Alignment:
Q  3 caacaaaaaatgccttcatgacacaagatgtgctaaggaagaaacaccaaaattcaaacag 63  Q
    |||||||||  | |||| ||||||||| |||||||| |||||||||||||||| |||||||    
T  10061800 caacaaaaatggtcttcttgacacaagttgtgctaaagaagaaacaccaaaatacaaacag 10061860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 24904961 - 24905006
Alignment:
Q  24 cacaagatgtgctaaggaagaaacaccaaaattcaaacagtgtcaa 69  Q
    |||||| ||||||||||||||||||||||| | |||||| ||||||    
T  24904961 cacaaggtgtgctaaggaagaaacaccaaagtacaaacaatgtcaa 24905006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 35516790 - 35516721
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaa 218  Q
    |||||||||||||||||||||||    |||| ||||||||| | |||| ||||||||||| |||| ||||    
T  35516790 taaatggactaagccaccaaccataaaaatttaagggaagactaacgtgtttccccttcaaccacgtgaa 35516721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 9628416 - 9628372
Alignment:
Q  24 cacaagatgtgctaaggaagaaacaccaaaattcaaacagtgtca 68  Q
    |||||| |||||||| |||||||||||||| |||||| |||||||    
T  9628416 cacaagttgtgctaaagaagaaacaccaaatttcaaatagtgtca 9628372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 13608949 - 13609034
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaatc 234  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||  ||||||||||    
T  13608949 taaacggactaagccaccaaccatggtaattgaagggaagattgacgtatttccctttcaaccacatgaaagttgtcgacttaatc 13609034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 32293650 - 32293714
Alignment:
Q  160 agccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaa 224  Q
    |||||||||||| |||| ||||||||| ||  |||| |||||||||||| |||||||||||||||    
T  32293650 agccaccaaccatggtatttgaagggaggaccgacgaatttccccttcaaccacatgaaagttaa 32293714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 22495237 - 22495308
Alignment:
Q  24 cacaagatgtgctaaggaagaaacaccaaaattcaaacagtgtcaagactatatttacaaggcaaagccaaa 95  Q
    |||||| |||||||| |||||||||||||||| |||| ||| |||  |||||| ||||||||||||| ||||    
T  22495237 cacaagttgtgctaaagaagaaacaccaaaatccaaatagtctcagtactataattacaaggcaaagtcaaa 22495308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 37773005 - 37772970
Alignment:
Q  154 ggactaagccaccaaccacggtaattgaagggaaga 189  Q
    |||||||||||||||||| |||||||||||||||||    
T  37773005 ggactaagccaccaaccatggtaattgaagggaaga 37772970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 13137178 - 13137093
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaatc 234  Q
    |||| |||||||||||||||||| | |||||||||  |||| |  |  ||||| |||||| |||| || |||||||||||||||||    
T  13137178 taaacggactaagccaccaaccatgataattgaagaaaagagtagcaaatttcaccttcaaccacctgtaagttaacgacttaatc 13137093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 27270009 - 27270046
Alignment:
Q  151 aatggactaagccaccaaccacggtaattgaagggaag 188  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  27270009 aatggactaagccaccaaccatgataattgaagggaag 27270046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 13608830 - 13608874
Alignment:
Q  24 cacaagatgtgctaaggaagaaacaccaaaattcaaacagtgtca 68  Q
    |||||| |||||||| |||||||||||||| |||||| |||||||    
T  13608830 cacaagttgtgctaaagaagaaacaccaaatttcaaatagtgtca 13608874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 22495373 - 22495441
Alignment:
Q  154 ggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagtt 222  Q
    ||| |||||||||||||| |||||||||| |  |||||| | |||||| | |||| |||||||||||||    
T  22495373 ggattaagccaccaaccatggtaattgaaagatagattggcatatttctctttcaaccacatgaaagtt 22495441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 45637520 - 45637456
Alignment:
Q  157 ctaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagt 221  Q
    ||||||||||||||| | ||||||| ||||| | |||| | ||||||||||| |||| |||||||    
T  45637520 ctaagccaccaaccatgttaattgaggggaatactgacatgtttccccttcaaccacgtgaaagt 45637456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 5690885 - 5690971
Alignment:
Q  24 cacaagatgtgctaaggaagaaacaccaaaattcaaacagtgtcaagactatatttacaaggcaaagccaaaccgcaaaagtggacaaaaa 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  |||  |||||||||||||||||||||||| |||||||||| ||||    
T  5690885 cacaagatgtgctaaggaagaaacacccaaattcaaacagtgtc--gac--tatttacaaggcaaagccaaaccgtaaaagtggaccaaaa 5690971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 36178957 - 36178888
Alignment:
Q  154 ggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagtta 223  Q
    ||||| |||||||||||| ||||||||| ||||||| |||| | ||||||||||| ||||||||| ||||    
T  36178957 ggacttagccaccaaccatggtaattgaggggaagactgacatgtttccccttcaaccacatgaaggtta 36178888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 45131127 - 45131200
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagtt 222  Q
    ||||||||||||||||||| ||| | |||||||||||||||    | ||||||||||||| |||||||||||||    
T  45131127 taaatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccacatgaaagtt 45131200  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 12606951 - 12606878
Alignment:
Q  157 ctaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgactt 230  Q
    ||||||||||||||| | || ||  | |||||| | |||||||||||||||| |||||||||||||| ||||||    
T  12606951 ctaagccaccaaccatgatagttcgaaggaagactaacgtatttccccttcaaccacatgaaagttagcgactt 12606878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 27009296 - 27009256
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaaga 189  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  27009296 taaacggactaagccaccaaccatggtaattgaagggaaga 27009256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 29691203 - 29691133
Alignment:
Q  157 ctaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacga 227  Q
    ||||||||||||||| | || ||| |||| ||| | |||||||||||||||| | ||||| ||||||||||    
T  29691203 ctaagccaccaaccatgatagttggaggggagactaacgtatttccccttcaactacatgtaagttaacga 29691133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 38409085 - 38409000
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaatc 234  Q
    |||| ||||| | |||||||||| | ||||||||||||||  |  || ||||| |||||| | ||||| |||||||||||||||||    
T  38409085 taaacggactgaaccaccaaccatgataattgaagggaagtgtagcgaatttcaccttcaactacatgtaagttaacgacttaatc 38409000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 40638804 - 40638844
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaaga 189  Q
    |||| |||||||||||||| ||| |||||||||||||||||    
T  40638804 taaacggactaagccaccacccatggtaattgaagggaaga 40638844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 16518256 - 16518473
Alignment:
Q  24 cacaagatgtgctaaggaagaaacaccaaaattcaaacagtgtca-agactatatttacaaggcaaagccaaaccgcaaaagtggac--aaaaacgaaa- 119  Q
    |||||| |||||||||||||||||||||||||||||||| |  || |   |||||||||||||||||||||  |||| |||| | |   |||||| |||     
T  16518256 cacaaggtgtgctaaggaagaaacaccaaaattcaaacatttacacattatatatttacaaggcaaagccactccgccaaagcgaaagtaaaaacaaaaa 16518355  T
Q  120 -gaaaccaacaa--aatcaatgtctgaaaagataaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatg 216  Q
     ||||| |||||  || ||||||||  |  | | || |||||||||||| ||||| ||||||||| |||||||||||  ||||||||||||| ||||||     
T  16518356 agaaactaacaattaaccaatgtctagagtggtgaacggactaagccactaaccatggtaattgaggggaagattgatatatttccccttcaaccacata 16518455  T
Q  217 aaagttaacgacttaatc 234  Q
    ||||||  ||||||||||    
T  16518456 aaagttgccgacttaatc 16518473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 8006872 - 8006788
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaat 233  Q
    |||||||||| |||||||||||| | ||||||||||||||| ||||| ||||| |||| |  ||||||||| |||| ||||||||    
T  8006872 taaatggactgagccaccaaccatgataattgaagggaagactgacgaatttctccttaaatcacatgaaaattaatgacttaat 8006788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 25942621 - 25942701
Alignment:
Q  154 ggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaatc 234  Q
    ||||||||||||||||||   |||||||| ||||||||| |||||||| | |||| ||| |||||||||  ||||||||||    
T  25942621 ggactaagccaccaaccataataattgaacggaagattggcgtatttctctttcaaccatatgaaagttgtcgacttaatc 25942701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 32246993 - 32246913
Alignment:
Q  150 aaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgactt 230  Q
    |||||| ||| ||||||||||| | || ||| |||| ||| | |||||||||||||||| |||| ||||||||||||||||    
T  32246993 aaatgggctatgccaccaaccaagatagttggaggggagagttacgtatttccccttcaaccacttgaaagttaacgactt 32246913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 8006997 - 8006957
Alignment:
Q  23 acacaagatgtgctaaggaagaaacaccaaaattcaaacag 63  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  8006997 acacaaggtgtgctaaggaagaaacaccaaaatacaaacag 8006957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 8488294 - 8488234
Alignment:
Q  3 caacaaaaaatgccttcatgacacaagatgtgctaaggaagaaacaccaaaattcaaacag 63  Q
    |||||||||  |||||| |  |||||| |||||||| |||||||||||||||| |||||||    
T  8488294 caacaaaaatggccttcctagcacaagttgtgctaaagaagaaacaccaaaatacaaacag 8488234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 18908558 - 18908638
Alignment:
Q  150 aaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgactt 230  Q
    |||||||||||||||||||||| |||| ||| |||||||| | || ||||| || |||| |||| | |||||  |||||||    
T  18908558 aaatggactaagccaccaaccatggtagttggagggaagagtaacatattttcctttcaaccacgtaaaagtcgacgactt 18908638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 25942486 - 25942562
Alignment:
Q  24 cacaagatgtgctaaggaagaaacaccaaaattcaaacagtgtcaagactatatttacaaggcaaagccaaaccgca 100  Q
    |||||| |||||||| |||| ||||||||||| ||||||||  ||  |  ||| ||||||||||||| |||||||||    
T  25942486 cacaagttgtgctaaagaagtaacaccaaaatccaaacagttacagtaaaataattacaaggcaaagtcaaaccgca 25942562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 1767155 - 1767083
Alignment:
Q  161 gccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaat 233  Q
    ||||||||||| |||||||||  |||||| ||||  |||||||||||| |||||||||||||| || ||||||    
T  1767155 gccaccaaccatggtaattgagaggaagactgacaaatttccccttcaaccacatgaaagttagcgccttaat 1767083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 18673454 - 18673390
Alignment:
Q  157 ctaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagt 221  Q
    ||||||||||||||| | ||||||| ||||||| |||| |||||| |||||| |||||| |||||    
T  18673454 ctaagccaccaaccatgataattgaggggaagactgacatatttctccttcaaccacataaaagt 18673390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 11298593 - 11298680
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaatcat 236  Q
    ||||||||||||||||||||||| | || || ||||||||| ||||  | ||| |||||| ||||   ||||||||| ||||||||||    
T  11298593 taaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactgaaaagttaacaacttaatcat 11298680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 29599177 - 29599254
Alignment:
Q  157 ctaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaatc 234  Q
    |||||||||||||||  ||||||||||||||||    |||||||| |||||| |||||||| || ||  |||||||||    
T  29599177 ctaagccaccaaccatagtaattgaagggaagagaagcgtatttcaccttcaaccacatgacagctacagacttaatc 29599254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 2189551 - 2189587
Alignment:
Q  24 cacaagatgtgctaaggaagaaacaccaaaattcaaa 60  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  2189551 cacaaggtgtgctaaggaagaaacaccaaaatacaaa 2189587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 43776311 - 43776250
Alignment:
Q  154 ggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacat 215  Q
    |||| ||||||||||||| | ||||||| ||| ||| |||||||||||||||||| ||||||    
T  43776311 ggacaaagccaccaaccatgataattgaggggtagactgacgtatttccccttcaaccacat 43776250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 23050213 - 23050128
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaatc 234  Q
    ||||||||||||||||||||||| || | || ||||||||| |  ||| ||||||||||| |||| |||||||  | |||||||||    
T  23050213 taaatggactaagccaccaaccatgggagtttaagggaagactagcgtgtttccccttcaaccacgtgaaagtcgatgacttaatc 23050128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 27302439 - 27302371
Alignment:
Q  155 gactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagtta 223  Q
    |||| |||||||||||| | ||||||| ||||||| | |||| ||||||||||| ||||||| ||||||    
T  27302439 gacttagccaccaaccatgataattgaggggaagactaacgtgtttccccttcaaccacatgtaagtta 27302371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 41878790 - 41878705
Alignment:
Q  149 taaatggactaagccaccaaccacggtaattgaagggaagattgacgtatttccccttcagccacatgaaagttaacgacttaatc 234  Q
    ||||||||||||||||||||||| | || || ||||||||| ||||  | ||| |||||| ||||  |||||||| | ||||||||    
T  41878790 taaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactggaaagttagcaacttaatc 41878705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 3694604 - 3694640
Alignment:
Q  24 cacaagatgtgctaaggaagaaacaccaaaattcaaa 60  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  3694604 cacaaggtgtgctaaggaagaaacaccaaaatacaaa 3694640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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