View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577-Insertion-13 (Length: 623)
Name: NF4577-Insertion-13
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577-Insertion-13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 212 - 623
Target Start/End: Original strand, 27715172 - 27715580
Alignment:
| Q |
212 |
acccgaattcctatgctcaaaacagccaggacaaaagcgcttgacagactacgcatgacagaaaacaccggcaaacaaaaactgcacaaactaacag-ta |
310 |
Q |
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| T |
27715172 |
acccgaattgcaatgctcaaaacagccaggacaaaagcgctttacagactgcgcatgacagaaaacaccggcaaacaaaaactgcacaaactaacagata |
27715271 |
T |
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| Q |
311 |
tcaattcaggaaccacaccactcgtcttcctgacattgaggatccttcctttgcgagacgatctgcctcatggttagcttcccttaggacatggataaat |
410 |
Q |
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| T |
27715272 |
tcaattcaggaaccacaccactcgtcttcctgacattgaggatccttcctttg----acgatctgcctcatggttagcttcccttaggacatggataaaa |
27715367 |
T |
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| Q |
411 |
tcgatatctttcataaccaataacatattcttcaacttattgtagtaaaaccttaaatttcacgaactctcgccaaggtttgttatccatgagagagcat |
510 |
Q |
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| T |
27715368 |
tcgatatctttcataaccaataacatattcttcaacttattgcagtaaaaccttaaatttcacggactctcgccaaggtttgttatccatgagagagcat |
27715467 |
T |
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| Q |
511 |
tcttagaatcagattcaatactaagtttacctattagaatcgacaaacgatccaggagtagttcaagagcaaaaacaattgcaagcagttcagcttcatt |
610 |
Q |
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| T |
27715468 |
tcttagaatcggattcaataataagtttacctattagaatcgacaaacgatccaggagtaattcaagagcaaaaacaattgcaagcagttcagcttcatt |
27715567 |
T |
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| Q |
611 |
tgaatccatgata |
623 |
Q |
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| T |
27715568 |
tgaatccatgata |
27715580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 44754000 - 44753839
Alignment:
| Q |
8 |
tagcatacggcaagcaaatccacaccaatacaccaa-ttctatttgagacttgaagctaaaatatccaagtgtcatttaacgcaacgcagacctgctata |
106 |
Q |
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| T |
44754000 |
tagcatatggcaagcaaatccacaccattataccaaattctatttgagatttgaagctaaaat--ccaagtgtcctttaagccaacgctgatctgctata |
44753903 |
T |
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| Q |
107 |
attccatcaagaaaatatacaccaagaccatggggcagcagcagagtgcacttctcagacacct |
170 |
Q |
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| T |
44753902 |
atgcgaacaagaaaaaatacaccaaggccatggaacagcagcagagtgcacttctcaaacacct |
44753839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 165 - 294
Target Start/End: Complemental strand, 44753763 - 44753634
Alignment:
| Q |
165 |
acaccttcaatgttgcgcagaacaccccctacacaacagctttgcctacccgaattcctatgctcaaaacagccaggacaaaagcgcttgacagactacg |
264 |
Q |
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| T |
44753763 |
acacctttattgttgcgcagaacaccccttataataaagttttgcctacccgaactgctatgctcaaaacagccaagaaaaaagcgcttgacagactaca |
44753664 |
T |
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| Q |
265 |
catgacagaaaacaccggcaaacaaaaact |
294 |
Q |
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| T |
44753663 |
catgaccgaaaacactggtaaacaaaaact |
44753634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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