View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577-Insertion-14 (Length: 612)
Name: NF4577-Insertion-14
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577-Insertion-14 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 44604887 - 44604450
Alignment:
| Q |
8 |
gaaagtaagttgcaccaatttgttg-gtgataccaccagcctcaccttcttgaacatttgtacctcgaatacaatccagaagcttggttttgccagcgtc |
106 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44604887 |
gaaagtaagttgcaccaatttgttgagtgataccaccagcctcaccttcttgaacatttgtacctcgaatacaatccagaagcttggttttgccagcgtc |
44604788 |
T |
|
| Q |
107 |
cacatgacccatgatgcagcaaattggtgaccggaggttactatcactcggcttagaaggcacagcagcctgttgtgtatcgtgctcttcgtttttctcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44604787 |
cacatgacccatgatgcagcaaattggtgaccggaggttactatcactcggcctagaaggcacagcagcctgttgtgtatcgtgctcttcgtttttctcc |
44604688 |
T |
|
| Q |
207 |
tcaaccacaactttggcgtcttctctatcttcagtttcttcagccacaggcttcgaaacagtttgatttttagcagcttctatggagacatacagagtgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44604687 |
tcaaccacaactttggcgtcttctctatcttcagtttcttcagccacaggcttcgaaacagtttgatttttagcagcttctatggagacatacagagtgt |
44604588 |
T |
|
| Q |
307 |
tagcaacnnnnnnntggtatcaagtaattacacaaattccaagcatatagaagtacaaactagcaataaaatgcaaatctcaccaggattacaaagctgc |
406 |
Q |
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|| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44604587 |
taacaacaaaaaaatggtatcaagtaattacacaaattccaagtatatagaagtacaaactagcaataaaatgcaaatctcaccaggattacaaagctgc |
44604488 |
T |
|
| Q |
407 |
ctcctgattgcatcaaaacgctctgcttgttctctctg |
444 |
Q |
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| T |
44604487 |
ctcctgattgcatcaaaacgctctgcttgttctctctg |
44604450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 44626652 - 44626378
Alignment:
| Q |
8 |
gaaagtaagttgcaccaatttgttgg-tgataccaccagcctcaccttcttgaacatttgtacctcgaatacaatccagaagcttggttttgccagcgtc |
106 |
Q |
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||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
44626652 |
gaaagtacgttgcaccaatctgttgggtgataccaccagcctcaccttcttgaacattggtacctcgaatgcaatccagaagcttggttttgccagtgtc |
44626553 |
T |
|
| Q |
107 |
cacatgacccatgatgcagcaaattggtgaccggaggttactatcactcggcttagaaggcacagcagcctgttgtgtatcgtgctcttcgtttttctcc |
206 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||| || | | |||||| |||||||| || ||||| ||| |
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| T |
44626552 |
cacatgacccatgatgcagcaaattggcgaccgaaggttcccttcactcggcttagaaggcacggctgacagttgtggatcgtgctttttctttttatcc |
44626453 |
T |
|
| Q |
207 |
tcaaccacaactttggcgtcttctctatcttcagtttcttcagccacaggcttcgaaacagtttgatttttagca |
281 |
Q |
| |
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|||||||||||||| || | || ||||||||||||||||||||| ||||||| | ||||| || |||| ||||| |
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| T |
44626452 |
tcaaccacaactttagcctgttttctatcttcagtttcttcagctgcaggctttgtaacaggtttatttgtagca |
44626378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 51 - 248
Target Start/End: Complemental strand, 182349 - 182152
Alignment:
| Q |
51 |
ccttcttgaacatttgtacctcgaatacaatccagaagcttggttttgccagcgtccacatgacccatgatgcagcaaattggtgaccggaggttactat |
150 |
Q |
| |
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|||||||||| ||| |||||||||||| | |||||||||||||||| |||| || |||| ||| |||||||||||||| || ||||| ||||| | || |
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| T |
182349 |
ccttcttgaaaattgttacctcgaataccacccagaagcttggtttttccagtgttgacatcacctatgatgcagcaaataggcgaccgtaggttcccat |
182250 |
T |
|
| Q |
151 |
cactcggcttagaaggcacagcagcctgttgtgtatcgtgctcttcgtttttctcctcaaccacaactttggcgtcttctctatcttcagtttcttca |
248 |
Q |
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||| ||||||| |||||||||||| ||||||| ||| || | || ||||| |||||||||||||||||||| | | |||||||| |||||||||| |
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| T |
182249 |
cacccggcttacaaggcacagcagagtgttgtgaatcatggtttttctttttgtcctcaaccacaactttggcctgctttctatcttgagtttcttca |
182152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 593752 - 593876
Alignment:
| Q |
50 |
accttcttgaacatttgtacctcgaatacaatccagaagcttggttttgccagcgtccacatgacccatgatgcagcaaattggtgaccggaggttacta |
149 |
Q |
| |
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||||| ||||||||| ||||||||||||||| |||||| |||||||||| | | ||| ||||||||||| |||||| || ||||||||||| | | |
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| T |
593752 |
accttgttgaacattactacctcgaatacaatgaagaagcatggttttgccggaggatgcatcacccatgatgctgcaaataggcgaccggaggttccca |
593851 |
T |
|
| Q |
150 |
tcactcggcttagaaggcacagcag |
174 |
Q |
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|||||||||||||||| ||||||| |
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| T |
593852 |
gcactcggcttagaaggaacagcag |
593876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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