View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577-Insertion-17 (Length: 342)
Name: NF4577-Insertion-17
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577-Insertion-17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 38765828 - 38766162
Alignment:
| Q |
8 |
aaacgtaccttacagggaaaagaaaacccgtcaagtattaatcctcctttggctcatgacatatgcacaataatgtatacaagtggaactagtggagatc |
107 |
Q |
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| T |
38765828 |
aaacgtaccttacagggaaaagaaaacccgtcaagtattaatcctcctttggctcatgacatatgcacaataatgtatacaagtggaactagtggagatc |
38765927 |
T |
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| Q |
108 |
ctaaaggcgttgttttaacacatgaaaacgtactagctttagtaagaggaatggatcttttcatggaacaatttgaggacaaggtggtatccttaatctt |
207 |
Q |
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| T |
38765928 |
ctaaaggcgttgttttaacacatgaaaacgtactagctttagtaagaggaatggatcttttcatggaacaatttgaggacaaggtggtatccttaatctt |
38766027 |
T |
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| Q |
208 |
ctttaattaattcataagctgaaattaattatatgtaatgtaacacatattttacttcgtgtagatgactgtggatgatgtgtatttatccttcctccct |
307 |
Q |
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| T |
38766028 |
ctttaattaattcataagctgaaattaattatatgtaatgtaacacatattttacttcgtgtagatgactgtggatgatgtgtatttatccttcctccct |
38766127 |
T |
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| Q |
308 |
ttagctcacatccttgatcgttgtattgaagaata |
342 |
Q |
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| T |
38766128 |
ttagctcacatccttgatcgttgtattgaagaata |
38766162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 44997872 - 44997739
Alignment:
| Q |
59 |
gctcatgacatatgcacaataatgtatacaagtggaactagtggagatcctaaaggcgttgttttaacacatgaaaac-gtactagctttagtaagagga |
157 |
Q |
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| T |
44997872 |
gctcatgatatatgtacaataatgtatacaagtggaacaagtggagaccctcagggtgttgttttgactcatgaaaacattact-tattttgtaagggga |
44997774 |
T |
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| Q |
158 |
atggatcttttcatggaacaatttgaggacaaggt |
192 |
Q |
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| T |
44997773 |
atggatattttcatggaacaatttgaagacaaggt |
44997739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 44997569 - 44997511
Alignment:
| Q |
269 |
tagatgactgtggatgatgtgtatttatccttcctccctttagctcacatccttgatcg |
327 |
Q |
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| T |
44997569 |
tagatgactgttgaagatgtgtatttatctttccttcctttggctcatatccttgatcg |
44997511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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