View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4577-Insertion-2 (Length: 1060)

Name: NF4577-Insertion-2
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4577-Insertion-2
NF4577-Insertion-2
[»] chr1 (6 HSPs)
chr1 (264-1060)||(39209906-39210672)
chr1 (12-237)||(39209686-39209911)
chr1 (370-552)||(24036791-24036978)
chr1 (192-335)||(24037047-24037194)
chr1 (668-739)||(7673907-7673978)
chr1 (95-142)||(24037276-24037323)
[»] chr8 (5 HSPs)
chr8 (578-943)||(27510436-27510799)
chr8 (8-359)||(27513835-27514184)
chr8 (369-552)||(27513624-27513807)
chr8 (369-511)||(8675102-8675245)
chr8 (189-335)||(8674890-8675040)
[»] chr3 (2 HSPs)
chr3 (369-523)||(9461134-9461298)
chr3 (95-137)||(9460971-9461013)
[»] chr2 (2 HSPs)
chr2 (430-542)||(38950770-38950885)
chr2 (668-709)||(27592764-27592805)
[»] chr6 (2 HSPs)
chr6 (426-478)||(18331979-18332031)
chr6 (480-547)||(18331878-18331945)
[»] chr4 (1 HSPs)
chr4 (668-719)||(42091774-42091825)


Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 264 - 1060
Target Start/End: Original strand, 39209906 - 39210672
Alignment:
Q  264 tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttgannnn 363  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||        
T  39209906 tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttgatttt 39210005  T
Q  364 nnnnnatttctgtgttgttgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaa 463  Q
         |||||||||||||||||||||||| |||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210006 ttt--atttctgtgttgttgtagcttccatagaagaa-----------ccttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaa 39210092  T
Q  464 gaggttgagttttttgaattttgattgttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatatatattataatggatgc 563  Q
    |||||||| ||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  39210093 gaggttgattttttt----------------gaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatatatattataatggaggt 39210176  T
Q  564 tccatttgatgtatacaagaatgagtttgaggtggctgtcaaaaagaggaatgagaaagtctattttaccgacggttggacattttttaaagaattttat 663  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |||||||||||||||||    
T  39210177 tccatttgatgtatacaagaatgactttgaggtggctgtcaaaaagaggaacgtgaaagtctattttactgacggttggaca-tttttaaagaattttat 39210275  T
Q  664 cgacttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttgggtgtatcct 763  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39210276 gtgcttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgcatggagatgagtt-ggtgtatcct 39210374  T
Q  764 caaagcactcctccacaaagaatgttgttgcagaaccatagtgctcatgcttacgttaatccattcataccatatggtttttctgcccttttacttccca 863  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  39210375 caaagcactcctccacaaagaatgttgttgcagaaccatagtgctcatgcttacg-taatcccttcataccatatggttcttctgcccttttacttccca 39210473  T
Q  864 ctac---cttctataacacaattgttaaggagttaaaccgcttctgacgttacttttgggatgttggtgagttgtatgattgtctattatgcagaatttg 960  Q
    ||||   ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||     
T  39210474 ctaccttcttctataacacaattgttaaggagtt-aaccgcttctgacgttacttttggaatgttggtgagttgtatgattgtcta-tatgcagaattt- 39210570  T
Q  961 gaattggcttgacttttggtcatctgcatttcgggctggagaaaattggactaactgtcatggactg-ctgggaatac-tggaag-tggttacggatttt 1057  Q
    ||||||||||||||||||   ||||||||||| |||| |||||||||| | |||||||||| || || |||| ||||| |||||| || |||||||||||    
T  39210571 gaattggcttgacttttgtcaatctgcatttcaggct-gagaaaattgaattaactgtcattgattgcctggaaatacttggaagttgtttacggatttt 39210669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 39209686 - 39209911
Alignment:
Q  12 ccctcacctccttctccttgccaccatccaatcttcttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39209686 ccctcacctccttctccttgccaccatccaatcttcttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttc 39209785  T
Q  112 taattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagagacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39209786 taattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagtgacggaaaccgaaatgaaggaactgctccgtccttcgatgagtaagaacaaa 39209885  T
Q  212 gaaaaacgatctgaaattcatgctaa 237  Q
    ||||||||||||||||||||||||||    
T  39209886 gaaaaacgatctgaaattcatgctaa 39209911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 370 - 552
Target Start/End: Complemental strand, 24036978 - 24036791
Alignment:
Q  370 tttctgtgttgttgtagcttccagagaagaaggtgccgaaga-ccttgaaaatacaagggaagttgatgaaactatctgcaag----cctgatgatgaag 464  Q
    |||||||||||||||||||||| ||||| ||| |||||||||   | ||| |||||||  |||||||||||||||||||||||    |||||||||||||    
T  24036978 tttctgtgttgttgtagcttccggagaaaaagctgccgaagatgatcgaagatacaagctaagttgatgaaactatctgcaagccatcctgatgatgaag 24036879  T
Q  465 aggttgagttttttgaattttgattgttttgaact-aatttgaatatgaatagattagattccaatgttgtgagtgtagaatatatatt 552  Q
    |||||||||||||| | ||||||||||||||| || |||||| |||| |||| || ||||| ||||||| |||||||||||||||||||    
T  24036878 aggttgagtttttt-agttttgattgttttgatctaaatttgtatataaataaatcagatttcaatgttttgagtgtagaatatatatt 24036791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 192 - 335
Target Start/End: Complemental strand, 24037194 - 24037047
Alignment:
Q  192 cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc 287  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||||     ||| |||||| || ||||||  ||||||||||||||||||||||     
T  24037194 cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt 24037095  T
Q  288 tgttattgaaagagctatcgagctcggtgaagaggttcactctctctc 335  Q
    || | || |||| ||||||||| ||||||||||||||| |||||||||    
T  24037094 tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctc 24037047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 668 - 739
Target Start/End: Complemental strand, 7673978 - 7673907
Alignment:
Q  668 ttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgc 739  Q
    ||||||||||||||||| ||||  | |||||| ||||||||||| ||||||||||||||||||| |||||||    
T  7673978 ttttggctggtacttgggtcacaattattttttcaaatcgacacatttttctgtttgaagttagaaatatgc 7673907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 24037323 - 24037276
Alignment:
Q  95 aaccttcccaaaccttctaattggctttcggtgggaagaggaaccgca 142  Q
    |||||||||||||||| | || ||||||||||||||||||||| ||||    
T  24037323 aaccttcccaaaccttatgatcggctttcggtgggaagaggaagcgca 24037276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 578 - 943
Target Start/End: Complemental strand, 27510799 - 27510436
Alignment:
Q  578 acaagaatgagtttgaggtggctgtcaaaaagaggaatgagaaagtctattttaccgacggttggacattttttaaagaatttta-tcgacttttggctg 676  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| | | ||||||||||    
T  27510799 acaagaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttactgacggttggacattttt-aaagaattttaatgggcttttggctg 27510701  T
Q  677 gtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttgggtgtatcctcaaagcactcctc 776  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  27510700 gtacttggatcactgtcatttttgaaaatcgacacctttttctgtttgaagttaggaatatacatggagatgagttgg-tgtatcctcaaagcactcctc 27510602  T
Q  777 cacaaagaatgttgttgcagaaccatagtgctcatgcttacgttaatccattcataccatatggtttttctgcccttttacttcccactaccttctataa 876  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  27510601 cacaaagaatgttgttgcagaaccatagtgctcatgcgtacgtaaattccttcataccatatggttcttctgcccttttacttcccactaccttttataa 27510502  T
Q  877 cacaattgttaaggagttaaaccgcttctgacgttacttttgggatgttggtgagttgtatgattgt 943  Q
    |||||||| | ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  27510501 cacaattgattaggagtt-aacctcttctgacgttacttttggaatgttggtgagttgtatgattgt 27510436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 27514184 - 27513835
Alignment:
Q  8 ctttccctcacctccttctccttgccaccatccaatcttcttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaac 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27514184 ctttccctcacctccttctccttgccaccatccgatcttcttctctttgttctctgatttttcaaattctgtctgttcaaattgtgaaaccttcccaaac 27514085  T
Q  108 cttctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagagacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | |||  ||||||||||| |||| ||||| |||||||||||||    
T  27514084 cttctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaaaggagacgaagaccagaatgaaggaaccgctccgtcctccgatgagtaagaa 27513985  T
Q  208 caaagaaaaacgatctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgctgttattgaaagagctatcg 307  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||  |||||||||||||||||    
T  27513984 caaagaaaaacgatctgaaattcatgctaaactcgtcagaagaagttttagaaacatgctaagtcgaaagctcacgatgctactattgaaagagctatcg 27513885  T
Q  308 agctcggtgaagaggttcactctctctcactggatggctgttgttgttttga 359  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  27513884 agctcggtgaagaggtt--ctctctctcactgaatggctgttgttgttttga 27513835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 369 - 552
Target Start/End: Complemental strand, 27513807 - 27513624
Alignment:
Q  369 atttctgtgttgttgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggt 468  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27513807 atttctgtgttgtcgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactacctgcaagcctgatgatgaagaggt 27513708  T
Q  469 tgagttttttgaattttgattgttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatatatatt 552  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  27513707 tgagttttttgaattttgagtgttttgaactaatttgaatatgaatagattagatttcaatgatgtgagtgtagaatatatatt 27513624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 369 - 511
Target Start/End: Original strand, 8675102 - 8675245
Alignment:
Q  369 atttctgtgttgttgtagcttccagagaagaaggtgccgaagacc-ttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagagg 467  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||  |||| |||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  8675102 atttctgtgttgttgtagcctccggagaagaaggtgccgaagacgattgagaatacaagggaagttgatgagactgtttgcaagcctgatgatgaagagg 8675201  T
Q  468 ttgagttttttgaattttgattgttttgaactaatttgaatatg 511  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||||    
T  8675202 ttgagttttttaaattttgattgttttgacctaatttcaatatg 8675245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 189 - 335
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
Q  189 gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga 284  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||     ||| |||||| || | ||||| |||||||| || ||||| ||    
T  8674890 gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga 8674989  T
Q  285 tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc 335  Q
    ||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  8674990 tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc 8675040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 5e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 369 - 523
Target Start/End: Original strand, 9461134 - 9461298
Alignment:
Q  369 atttctgtgttgttgtagcttccagagaagaaggtgccgaagacc-ttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagagg 467  Q
    |||| |||||||||| |||||||  | |||||||||  |||||   |||||||||  | |||||||||||||||||||||||||||||||||||||||||    
T  9461134 atttttgtgttgttgcagcttccgaataagaaggtgttgaagattattgaaaataagaaggaagttgatgaaactatctgcaagcctgatgatgaagagg 9461233  T
Q  468 ttgagttttt---------tgaattttgattgttttgaactaatttgaatatgaatagattagat 523  Q
    ||||||||||         | ||||||||||||||||| ||||||||||||||| ||||||||||    
T  9461234 ttgagtttttttttttttgttaattttgattgttttgacctaatttgaatatgattagattagat 9461298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 9460971 - 9461013
Alignment:
Q  95 aaccttcccaaaccttctaattggctttcggtgggaagaggaa 137  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  9460971 aaccttcccaaaccttctgattggctttcggtgggaacaggaa 9461013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 430 - 542
Target Start/End: Complemental strand, 38950885 - 38950770
Alignment:
Q  430 agttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttg------aattttgattgttttgaactaatttgaatatgaatagattagat 523  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| ||||||||||||||| ||||||||||    
T  38950885 agttgatgaaactatctgcaagcctgatga---agaggttgagtttttttttttttaattttgattgttttgacctaatttgaatatgattagattagat 38950789  T
Q  524 tccaatgttgtgagtgtag 542  Q
    | ||| |||||||||||||    
T  38950788 ttcaaagttgtgagtgtag 38950770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 709
Target Start/End: Original strand, 27592764 - 27592805
Alignment:
Q  668 ttttggctggtacttggatcactgtcatttttgcaaatcgac 709  Q
    |||||| |||| |||||| |||||||||||||||||||||||    
T  27592764 ttttggttggttcttggaccactgtcatttttgcaaatcgac 27592805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 426 - 478
Target Start/End: Complemental strand, 18332031 - 18331979
Alignment:
Q  426 gggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagtttttt 478  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18332031 gggaagttgatgaaactatctacaagcctgatgatgaagaggttgagtttttt 18331979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 480 - 547
Target Start/End: Complemental strand, 18331945 - 18331878
Alignment:
Q  480 aattttgattgttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatat 547  Q
    |||||||||||||||||  |||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  18331945 aattttgattgttttgacataatttgaatatgattagattagatttcaatattgtgagtgtagaatat 18331878  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 668 - 719
Target Start/End: Complemental strand, 42091825 - 42091774
Alignment:
Q  668 ttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttct 719  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  42091825 ttttggctggttcttggatcactgtcatttttgcaaatcgacgcctttttct 42091774  T

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