View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4577-Insertion-3 (Length: 1040)

Name: NF4577-Insertion-3
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4577-Insertion-3
NF4577-Insertion-3
[»] chr4 (14 HSPs)
chr4 (8-981)||(4600033-4601001)
chr4 (16-330)||(4624824-4625141)
chr4 (12-153)||(25039341-25039482)
chr4 (30-129)||(25018254-25018353)
chr4 (511-605)||(4624738-4624832)
chr4 (761-924)||(4624339-4624502)
chr4 (199-304)||(25018056-25018161)
chr4 (198-299)||(25039175-25039276)
chr4 (533-630)||(25039040-25039137)
chr4 (45-107)||(25047277-25047339)
chr4 (44-127)||(25160729-25160812)
chr4 (46-107)||(25169161-25169222)
chr4 (46-107)||(25180949-25181010)
chr4 (46-107)||(25252032-25252093)
[»] chr2 (3 HSPs)
chr2 (24-330)||(18803513-18803830)
chr2 (514-603)||(18803825-18803914)
chr2 (759-878)||(18804057-18804175)
[»] chr7 (3 HSPs)
chr7 (331-508)||(36543820-36544000)
chr7 (338-413)||(22304692-22304767)
chr7 (376-459)||(22304976-22305059)
[»] chr1 (1 HSPs)
chr1 (360-459)||(26509043-26509142)
[»] chr5 (1 HSPs)
chr5 (46-100)||(30360258-30360312)
[»] chr6 (1 HSPs)
chr6 (46-127)||(29405630-29405711)


Alignment Details
Target: chr4 (Bit Score: 827; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 827; E-Value: 0
Query Start/End: Original strand, 8 - 981
Target Start/End: Complemental strand, 4601001 - 4600033
Alignment:
Q  8 gtctagtatatatgtattaaccatttttacatcttaataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4601001 gtctagtatatatgtattaaccatttttacatcttaataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttgg 4600902  T
Q  108 ccaaggatattgccaagtaatagaaaatgtttaatttagttacatcgaagagtttcaactagttgtatcttccatatacactgacaactctaacaaatat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||    
T  4600901 ccaaggatattgccaagtaatagaaaatgtttaatttagttacatcgaagagtttc-------tgcatcttccatatacactgacaactctaacaaatat 4600809  T
Q  208 gcagatggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgatcgatgagctacttgctaatggtaatacataataatcca 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  4600808 gcagatggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgattgatgagctacttgctaatggtaatacataataataca 4600709  T
Q  308 taatttattagtacatcatattcgagcgctgctattttcagcgaaatatattatcacgaacctgtcgtgaatgccttgccaccattggatttagtttagc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4600708 taatttattagtacatcatattcgagcgctgctattttcagcgaaatatattatcacgaacctgtcgtgaatgccttgccaccattggatttagtttagc 4600609  T
Q  408 gaaaatcatgggatcgatggataaatagatgggaacatgctacagtaacaacgcagtcatgaggttctcgggatgaactatttcgcgagaaatagcatta 507  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4600608 gaaaatcatgggatcgatggataaatagatgagaacatgctacagtaacaacgcagtcgtgaggttctcgggatgaactatttcgcgagaaatagcatta 4600509  T
Q  508 tccatcatattcgtgatgttcatgctcataataatataaattgatggaattattgatccaggtcaaataccatatgtgaccctttttcattgggatctgc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4600508 tccatcatattcgtgatgttcatgctcataataatataaattgatggaattattgatccaggtcaaataccatatgtaaccctttttcattgggatctgc 4600409  T
Q  608 ccaacatcttacaagaggagtacgaaggattctgcagcccgtatattatgtaagtattgtgtcacatattttcattcaaaaaataataaattgatgatag 707  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4600408 ccaacatcttacaagaggagtacgaaggattctgcagcccatatattatgtaagtattgtgtcacatattctcattcaaaaaataataaattgatgatag 4600309  T
Q  708 agcattatgacannnnnnnatccacatggttgat-cctcttagtggtataaggtttgattgtttaatttctacgtgcagaaatgattttaaggactttgt 806  Q
    ||||||||||||       ||||| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4600308 agcattatgacatttttttatccatatagttgatccctcttagtgatataaggtttgattgtttaatttctacgtgcagaaatgattttaaggactttgt 4600209  T
Q  807 ggagatatgcttccaagaattttggagatagagtaaagcattgggttacttttaacgagccattctcttactgtttgagtacatcacatcgttacaaagc 906  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  4600208 ggagatatgcttccaagaa-tttggagatagagtaaagcattgggttacttttaatgagccattctcttattgtttgagtacatcacatcgttacaaagc 4600110  T
Q  907 cacacac-accaacttcttttctcatgcagctg-tgtcg-attgtataaacccaaatatcaggtgcaacactaaaaat 981  Q
    ||||||| ||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  4600109 cacacacaaccaacttc-tttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacactaaaaat 4600033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 4625141 - 4624824
Alignment:
Q  16 tatatgtattaaccatttttacatcttaataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttggccaaggat 115  Q
    ||||||| ||||||||| ||||||||||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4625141 tatatgtgttaaccattgttacatcttaacaggaagatgttcaaatcatgaagaatatgaatacagatgcatacagattctccatatcttggccaaggat 4625042  T
Q  116 attgccaagtaatagaaaatgtttaatttagttacatcg---aagagtttcaactagttgtatcttccatatacactgacaactctaacaaatatgcaga 212  Q
    | | ||||||||||||||||||||||||| ||||||||    | ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||     
T  4625041 agttccaagtaatagaaaatgtttaatttggttacatcattaatgagtttcaactagttgtattttccatatacactaacaactctaacaaatatgcagc 4624942  T
Q  213 tggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgatcgatgagctacttgctaatggtaatacataataatccataatt 312  Q
    ||||||| |||||| |||| ||||||||| |||||||| ||||||||| || |||||| ||||||||||||||||||||||| ||||||| |||||| ||    
T  4624941 tggaaaaataagtgacggtgtaaaccaagcaggaatcatattttacaagaacctgatctatgagctacttgctaatggtaatgcataatattccatactt 4624842  T
Q  313 tattagtacatcatattc 330  Q
    |||||||| |||||||||    
T  4624841 tattagtatatcatattc 4624824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 25039482 - 25039341
Alignment:
Q  12 agtatatatgtattaaccatttttacatcttaataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttggccaa 111  Q
    ||||||||| |  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25039482 agtatatatattgtaaccatttttacatcttaataggaggatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttggccaa 25039383  T
Q  112 ggatattgccaagtaatagaaaatgtttaatttagttacatc 153  Q
    | ||||||||||||||||  |||| || |||||||| |||||    
T  25039382 gaatattgccaagtaataacaaatcttgaatttagtcacatc 25039341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 25018353 - 25018254
Alignment:
Q  30 atttttacatcttaataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttggccaaggatattgccaagtaata 129  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  25018353 atttttacatcttaataggaagatgtcgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttggccaagaatattgccaagtaata 25018254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 511 - 605
Target Start/End: Complemental strand, 4624832 - 4624738
Alignment:
Q  511 atcatattcgtgatgttcatgctcataataatataaattgatggaattattgatccaggtcaaataccatatgtgaccctttttcattgggatct 605  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4624832 atcatattcatgatgttcatactcataataatataaattgatggaattattgatccaggtcaaataccatatgtgaccctttttcattgggatct 4624738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 761 - 924
Target Start/End: Complemental strand, 4624502 - 4624339
Alignment:
Q  761 ttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaattttggagatagagtaaagcattgggttactttta 860  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||| | |||||| ||||| || ||||||||||||||||||||||    
T  4624502 ttgattgtttaatttctatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaattt-ggagacagtgtaaagcattgggttactttta 4624404  T
Q  861 acgagccattctcttactgtttgagtacatcacatcgttacaaagccacacac-accaacttctt 924  Q
    | |||||||||||||||  ||||||||||||| || | |||||  |||||||| |||||||||||    
T  4624403 atgagccattctcttacactttgagtacatcagattggtacaagtccacacacaaccaacttctt 4624339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 199 - 304
Target Start/End: Complemental strand, 25018161 - 25018056
Alignment:
Q  199 aacaaatatgcagatggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgatcgatgagctacttgctaatggtaatacat 298  Q
    |||||||||||||| |||||| ||||||  |||||||| ||||||||||||| || |||||||||||||||| |||||||||||| |||||||||| |||    
T  25018161 aacaaatatgcagaaggaaaagtaagtgcgggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaatgcat 25018062  T
Q  299 aataat 304  Q
    ||||||    
T  25018061 aataat 25018056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 25039276 - 25039175
Alignment:
Q  198 taacaaatatgcagatggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgatcgatgagctacttgctaatggtaataca 297  Q
    ||||||||||||||| |||||| ||||||  |||||||||||||||||||||| || ||||||||| |||||| |||| ||||||| |||||||||| ||    
T  25039276 taacaaatatgcagaaggaaaagtaagtgaaggtataaaccaagaaggaatcaaatattacaacaacctgatcaatgaactacttgataatggtaatgca 25039177  T
Q  298 ta 299  Q
    ||    
T  25039176 ta 25039175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 533 - 630
Target Start/End: Complemental strand, 25039137 - 25039040
Alignment:
Q  533 tcataataatataaattgatggaattattgatccaggtcaaataccatatgtgaccctttttcattgggatctgcccaacatcttacaagaggagtac 630  Q
    ||||| ||||||||||||||||| |||||||||||||||   |||||| |||||||||||| ||||||||||| ||| |  | |||||||| ||||||    
T  25039137 tcatagtaatataaattgatggacttattgatccaggtctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacgagtac 25039040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 25047339 - 25047277
Alignment:
Q  45 taggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttgg 107  Q
    ||||||||||||| ||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  25047339 taggaagatgttggaatcatgaagtatatgaatatggatgcttatagattctccatttcttgg 25047277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 25160812 - 25160729
Alignment:
Q  44 ataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttggccaaggatattgccaagtaa 127  Q
    |||||||||||||   ||||||||  |||||||   |||| ||||||||||||||||||| ||| | || ||||||||||||||    
T  25160812 ataggaagatgttaagatcatgaaagatatgaacttagattcatacagattctccatatcctggtctagaatattgccaagtaa 25160729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 25169222 - 25169161
Alignment:
Q  46 aggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttgg 107  Q
    ||||||||||||  ||||||||| |||||||    |||||||||||||| ||||||||||||    
T  25169222 aggaagatgttggtatcatgaaggatatgaacttggatgcatacagattttccatatcttgg 25169161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 25181010 - 25180949
Alignment:
Q  46 aggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttgg 107  Q
    ||||||||||||  ||||||||| |||||||    |||||||||||||| ||||||||||||    
T  25181010 aggaagatgttggtatcatgaaggatatgaacttggatgcatacagattttccatatcttgg 25180949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 25252032 - 25252093
Alignment:
Q  46 aggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttgg 107  Q
    ||||||||||||  ||||||||| |||||||    |||||||||||||| ||||||||||||    
T  25252032 aggaagatgttggtatcatgaaggatatgaacttggatgcatacagattttccatatcttgg 25252093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 6e-86; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 24 - 330
Target Start/End: Original strand, 18803513 - 18803830
Alignment:
Q  24 ttaaccatttttacatcttaataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttggccaaggatattgccaa 123  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  18803513 ttaaccatttttacatcttcataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaa 18803612  T
Q  124 gtaatagaaaatgtttaatttagt---tacatcgaagagtttcaactagttgtatcttccatatac-actgacaactctaac-------aaatatgcaga 212  Q
    ||||||||||| ||||||||||||    ||||  ||||| |||||  ||||| ||||||||||||| | | |||||||||||       ||| |||||||    
T  18803613 gtaatagaaaaagtttaatttagtgaccacattaaagagcttcaatcagttgaatcttccatatactaataacaactctaacaaagtaaaaacatgcaga 18803712  T
Q  213 tggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgatcgatgagctacttgctaatggtaatacataataatccataatt 312  Q
     |||||||| |||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||| || ||    
T  18803713 aggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatgagctacttgataatggtaatgcataataatccctactt 18803812  T
Q  313 tattagtacatcatattc 330  Q
    |||||||| || ||||||    
T  18803813 tattagtatataatattc 18803830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 514 - 603
Target Start/End: Original strand, 18803825 - 18803914
Alignment:
Q  514 atattcgtgatgttcatgctcataataatataaattgatggaattattgatccaggtcaaataccatatgtgaccctttttcattgggat 603  Q
    |||||| ||||||||||  ||||| |||||||||||||  || ||||||||||||||| | |||||||||||||||||||||||| ||||    
T  18803825 atattcatgatgttcataatcatagtaatataaattgactgagttattgatccaggtctagtaccatatgtgaccctttttcattcggat 18803914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 759 - 878
Target Start/End: Original strand, 18804057 - 18804175
Alignment:
Q  759 gtttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaattttggagatagagtaaagcattgggttacttt 858  Q
    |||| |||||||||||||||| |||||| ||||||| |||  |||||||||| |||||||| | ||| |||||||| |||||||| |||||| ||||| |    
T  18804057 gtttaattgtttaatttctacatgcagagatgatttcaagagctttgtggaggtatgcttcgaggaa-tttggagacagagtaaatcattggattactct 18804155  T
Q  859 taacgagccattctcttact 878  Q
    ||| ||||||| || |||||    
T  18804156 taatgagccatacttttact 18804175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 7e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 331 - 508
Target Start/End: Original strand, 36543820 - 36544000
Alignment:
Q  331 gagcgctgctattttcagcgaaatatattatcacgaacctgtcgtgaatgccttgccaccattggatttagtttagcgaaaatcatgggatcgatggata 430  Q
    |||| ||||||||| ||| |||| | |||||||||||||||| |||||| ||||||||||||||||||||  |||||  ||||||||||||   ||||||    
T  36543820 gagcactgctatttacagtgaaacaaattatcacgaacctgtagtgaattccttgccaccattggatttacattagcagaaatcatgggatgtttggata 36543919  T
Q  431 aatagatgggaacatgctacagta----acaacgcagtcatgaggttctcgggatgaactatttcgcgagaaatagcattat 508  Q
    ||   |||  ||||||||||| ||    |||| |||| |||| |||||||| |||||||||||| | ||||| |||||||||    
T  36543920 aa-gtatgaaaacatgctacaataacttacaaagcagacatggggttctcgagatgaactattttgtgagaagtagcattat 36544000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 22304767 - 22304692
Alignment:
Q  338 gctattttcagcgaaatatattatcacgaacctgtcgtgaatgccttgccaccattggatttagtttagcgaaaat 413  Q
    ||||||| |||||||||| ||| |||||||||||||| |||| |||||||||||||||||||| ||||||| ||||    
T  22304767 gctatttgcagcgaaataaattctcacgaacctgtcgcgaattccttgccaccattggatttaatttagcggaaat 22304692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 459
Target Start/End: Original strand, 22304976 - 22305059
Alignment:
Q  376 gaatgccttgccaccattggatttagtttagcgaaaatcatgggatcgatggataaatagatgggaacatgctacagtaacaac 459  Q
    |||| |||| |||||||| |||||| ||||    |||||||| ||| | |||||||| ||||| ||||||||||||||||||||    
T  22304976 gaattcctttccaccatttgatttactttacaagaaatcatgtgatggttggataaaaagatgagaacatgctacagtaacaac 22305059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 360 - 459
Target Start/End: Complemental strand, 26509142 - 26509043
Alignment:
Q  360 atcacgaacctgtcgtgaatgccttgccaccattggatttagtttagcgaaaatcatgggatcgatggataaatagatgggaacatgctacagtaacaac 459  Q
    ||||||||||| ||  ||||  ||||||||||||||||||  ||||||| |||||||||||| | |||||||| ||||| ||||||||||| ||||||||    
T  26509142 atcacgaacctatcccgaattgcttgccaccattggatttgctttagcggaaatcatgggatggttggataaaaagatgtgaacatgctacggtaacaac 26509043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 30360258 - 30360312
Alignment:
Q  46 aggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccat 100  Q
    ||||||||||||  ||||||||||||||||||  ||||||||| ||||| |||||    
T  30360258 aggaagatgttgggatcatgaagtatatgaatttagatgcatatagattatccat 30360312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 29405630 - 29405711
Alignment:
Q  46 aggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttggccaaggatattgccaagtaa 127  Q
    |||||||||| |  ||||||||| | ||||| |  ||||| ||||||||||| || |||||| |||| ||||||||||||||    
T  29405630 aggaagatgtcgagatcatgaaggacatgaacatggatgcttacagattctcaatctcttggtcaagaatattgccaagtaa 29405711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University