View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4577-Insertion-4 (Length: 1014)

Name: NF4577-Insertion-4
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4577-Insertion-4
NF4577-Insertion-4
[»] chr5 (2 HSPs)
chr5 (12-132)||(34836904-34837025)
chr5 (561-605)||(33392054-33392098)
[»] chr2 (2 HSPs)
chr2 (933-1006)||(18841831-18841904)
chr2 (177-293)||(39770267-39770384)
[»] chr8 (1 HSPs)
chr8 (559-604)||(14248302-14248347)
[»] chr3 (1 HSPs)
chr3 (230-316)||(43365497-43365584)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 34837025 - 34836904
Alignment:
Q  12 tgtgctctatctatgaacatatatagtagaatatgttagaaaaaagtaagctaaatgannnnnnn-gacaaaacacaaatgaattagggtatatgcaaat 110  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |        |||||||||||||||||||| |||||||||||||    
T  34837025 tgtgctctatctatgaatatatatagtaaaatatgttagaaaaaagtaagctaaataattttttttgacaaaacacaaatgaattaaggtatatgcaaat 34836926  T
Q  111 taaaacatgtacatttcagagt 132  Q
    ||||||||||||||| ||||||    
T  34836925 taaaacatgtacattccagagt 34836904  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 561 - 605
Target Start/End: Complemental strand, 33392098 - 33392054
Alignment:
Q  561 ccaagacaccacctcggattccaccgccattcgtaatacaaacat 605  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||    
T  33392098 ccaagacaccacctcggattccacctccattcgtaaagcaaacat 33392054  T

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Target: chr2 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 933 - 1006
Target Start/End: Original strand, 18841831 - 18841904
Alignment:
Q  933 actattttatgcaatcgataattcacaacattggtaaaatcctcgtatagtacacaacatgttttaagagctca 1006  Q
    |||||||||||||||||| |||||||||||||||| |||  |||||||||||||||||||||||||||||||||    
T  18841831 actattttatgcaatcgaaaattcacaacattggttaaaatctcgtatagtacacaacatgttttaagagctca 18841904  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 39770384 - 39770267
Alignment:
Q  177 ttaatcagcaaatattgttgagctgggttagcacaagaagcactgtacc-gcataggaggaaaaagagtatacaagtgcctgaaaataaaagcacctaaa 275  Q
    ||||||||||||| || || | || |||||| |||||| ||||| |||| ||| |||||||||||||||| |  |||||| |||||  |||||||||||     
T  39770384 ttaatcagcaaattttattaaactaggttagtacaagatgcactatacccgcaaaggaggaaaaagagtacaatagtgcccgaaaacgaaagcacctaac 39770285  T
Q  276 caccaaactgtctcatta 293  Q
    ||| ||| || |||||||    
T  39770284 cacaaaattgcctcatta 39770267  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 14248302 - 14248347
Alignment:
Q  559 ctccaagacaccacctcggattccaccgccattcgtaatacaaaca 604  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||    
T  14248302 ctccaagataccatctcggattccaccgccattcataatacaaaca 14248347  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 43365584 - 43365497
Alignment:
Q  230 aggaggaaaaagagtatacaagtgcctgaaaataaaagcacctaaacaccaaactgtctcattaaaaaa-cctcctaacaatcctaat 316  Q
    |||||||||||||||| |  | ||||| || |  || |||||||||||||||| || |||| ||||||| ||||||||||||||||||    
T  43365584 aggaggaaaaagagtacaatattgcctaaataataaggcacctaaacaccaaattgcctcactaaaaaaacctcctaacaatcctaat 43365497  T

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