View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4577-Insertion-5 (Length: 1011)

Name: NF4577-Insertion-5
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4577-Insertion-5
NF4577-Insertion-5
[»] chr5 (17 HSPs)
chr5 (8-1011)||(36765257-36766255)
chr5 (715-1011)||(36746475-36746771)
chr5 (8-311)||(36755085-36755387)
chr5 (70-311)||(36747633-36747880)
chr5 (444-537)||(36747302-36747395)
chr5 (715-855)||(36770095-36770240)
chr5 (447-537)||(36754702-36754790)
chr5 (442-529)||(36770636-36770723)
chr5 (287-386)||(36771143-36771242)
chr5 (717-855)||(36746882-36747018)
chr5 (789-855)||(36754292-36754358)
chr5 (600-664)||(36754560-36754625)
chr5 (600-664)||(36747160-36747225)
chr5 (601-645)||(36770381-36770425)
chr5 (665-701)||(36754214-36754250)
chr5 (670-705)||(36746811-36746846)
chr5 (8-45)||(36747879-36747916)
[»] chr1 (1 HSPs)
chr1 (442-535)||(23439012-23439105)


Alignment Details
Target: chr5 (Bit Score: 768; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 8 - 1011
Target Start/End: Complemental strand, 36766255 - 36765257
Alignment:
Q  8 gacaaaaccttgaatttatccactacttgatacgccataacgacacaattattaaacaatctatcattcctaactttccttatcaatgaaatagctgcgt 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  36766255 gacaaaaccttgaatttatccacaacttgatacgccataacgacacaattattaaacaatctatcattcctaactttccttatcaattaaatagttgcgt 36766156  T
Q  108 gccaaataatttctaaacacttctagctttcttgccattaaaagtgccgattagaaatagaattagagagaacaagttgggaggggttaccaatataatt 207  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||           
T  36766155 ggcaaataatttctaaacacttctagctttcttgccattaaaagtgccgattagaa-tagaattagagagaacaagttgggaggggttaccaa------- 36766064  T
Q  208 cccaaccatccgaaaactgcaaagcaaatttcaaaagccacgtacaagtgcatagccacacaaaataattaccaatataattcctcatgattcattttcc 307  Q
        |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36766063 ----accatcggaaaactgcaaagcaaatttcaaaagccacgtacaagtgcatagccacacaaaataattaccaatataattcctcatgattcattttcc 36765968  T
Q  308 atatacaacacaaatgaattactcactcaaagatgattttaattaaattcctaaatagtttattaataaaggatttaaagcacttgataatcatcaatgg 407  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36765967 atatacaacacaaatgaattactcactccaagatgattttaattaaattcctcaatagtttattaataaaggatttaaagcacttgataatcatcaatgg 36765868  T
Q  408 aaaactaaaatcacccattagaccatgacaacatttaatactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaag 507  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36765867 aaaactaaaatcacccataagaccatgacaacatttaatactcatttaatagcatagattataatagaaagtaaagaaaaaaggtaacaataaagtaaag 36765768  T
Q  508 gaaacaaatttgacaaacaagtaggcatttccacataaaacatg--nnnnnnnnnnnaggaaaacattataatgcacaaaccatgattcttaactcacaa 605  Q
    ||||||||||||||||||||||||||||||| ||||||||||||             || |||||||||||||||||||||||||||||| |||||||||    
T  36765767 gaaacaaatttgacaaacaagtaggcatttctacataaaacatgtttttttttttttagcaaaacattataatgcacaaaccatgattctgaactcacaa 36765668  T
Q  606 tggtccatttcatctaacaactcccaaacctaattttacaaacacatgaaacctcaattggtggaattacatgcataaatctgattcttacatgcattga 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36765667 tggtccatttcatctaacaactcccaaacctaattttacaaacacatgaaacctcaattggtggaattacatgcataaatctgattcttacatgcattga 36765568  T
Q  706 -nnnnnnngaagagaataaatgcataatttcattagtgcatatgcaagtaagctaccaactccagagcaaacacatgcaagcacatagttctaattttag 804  Q
            ||| |||||||||||||||||||||||||  | ||||| | |||||| |||||||||| ||| |||||||||||||||||||||||||||||    
T  36765567 ttttttttgaaaagaataaatgcataatttcattagtatacatgcatgcaagctatcaactccagaacaagcacatgcaagcacatagttctaattttag 36765468  T
Q  805 aagatgttctcacatcaaaagtagaaatctaaaacaagactcaccaaacttaaaggat-aaatgatgatgatgttggtctctctaattcaagctgagcat 903  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36765467 aagatgttctcacatcaaaagtagaaatctaaaacaagactcaccaaacttaaaggataaaatgatgatgatgttggtctctctaattcaagctgagcat 36765368  T
Q  904 gaggctgttgtgtgtctctctcttt-ctttgcagagagacattgtttgtgtatgtctc-agagtgagtgtga-ggagtactagaatgaagtggaatatat 1000  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  36765367 gaggctgttgtgtgtctctttctttgttttgcagagagacattgtttgtgtatgtctcaagagtgagtgtgagggagtactagaatgaagtggaatatat 36765268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 715 - 1011
Target Start/End: Complemental strand, 36746771 - 36746475
Alignment:
Q  715 agagaataaatgcataatttcattagtgcatatgcaagtaagctaccaactccagagcaaacacatgcaagcacatagttctaattttagaagatgttct 814  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36746771 agagaataaatgcataatttcattagtgcatatgcatgtaagctaccaactccagaacaaacacatgcaagcacatagttctaattttagaagatgttct 36746672  T
Q  815 cacatcaaaagtagaaatctaaaacaagactcaccaaacttaaaggataaatgatgatgatgttgg--tctctctaattcaagctgagcatgaggctgtt 912  Q
    |||||||||||||||||||||| ||||||||||||||||||||||   | ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  36746671 cacatcaaaagtagaaatctaagacaagactcaccaaacttaaag--aagatgatgatgatgttggtttctctctagttcaagcggagcatgaggctgtt 36746574  T
Q  913 gtgtgtctctctcttt-ctttgcagagagacattgtttgtgtatgtctc-agagtgagtgtgaggagtactagaatgaagtggaatatattagatgatat 1010  Q
    |||||||||| |||||  ||||||||||||||||||| ||||||||||| |||||| ||| | |||||| |||||||| ||||||||||||||| |||||    
T  36746573 gtgtgtctctttctttgttttgcagagagacattgttggtgtatgtctcgagagtg-gtgag-ggagtagtagaatgaggtggaatatattagacgatat 36746476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 36755387 - 36755085
Alignment:
Q  8 gacaaaaccttgaatttatccactacttgatacgccataacgacacaattattaaacaatctatcattcctaactttccttatcaatgaaatagctgcgt 107  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| |||||    
T  36755387 gacaaaaccttgaatttatccacaacttgatgcgccataacgacacaattattgaacaatctatcattcctaactttccttatcaaccaaatagttgcgt 36755288  T
Q  108 gccaaataa-tttctaaacacttctagctttcttgccatta-----aaagtgccgattagaaatag-aattagagagaacaagttgggaggggttaccaa 200  Q
    ||||||||| || | || |||||||||||||||||||||||     ||||||   ||||| ||||| |||||||||||| |||| |||||||      ||    
T  36755287 gccaaataagttgcaaaccacttctagctttcttgccattaaaattaaagtgtgaattag-aatagaaattagagagaataagtcgggaggg------aa 36755195  T
Q  201 tataattcccaaccatccgaaaactgcaaagcaaatttcaaaagccacgtacaagtgcatagccacacaaaataattaccaatataattcctcatgattc 300  Q
    |||||||||||  |||| ||||||||||||| |||| |||||||||||   ||||||| |    | ||||||||||||||||||| ||| ||||| ||||    
T  36755194 tataattcccactcatcggaaaactgcaaaggaaatgtcaaaagccacacccaagtgcttgaggatacaaaataattaccaatattatttctcat-attc 36755096  T
Q  301 attttccatat 311  Q
    | |||||||||    
T  36755095 aatttccatat 36755085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 70 - 311
Target Start/End: Complemental strand, 36747880 - 36747633
Alignment:
Q  70 atcattcctaactttccttatcaatgaaatagctgcgtgccaaataatttctaaac-acttctagctttcttgccattaaaa-----gtgccgattagaa 163  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||| ||  |||| |||||||||||||||||||||||||     |||   |||||||    
T  36747880 atcattcctaactttccttatcaatcaaatagttgcgtgccaaataagttgcaaaccacttctagctttcttgccattaaaattaaagtgtgaattagaa 36747781  T
Q  164 atag-aattagagagaacaagttgggaggggttaccaatataattcccaaccatccgaaaactgcaaagcaaatttcaaaagccacgtacaagtgcatag 262  Q
     ||| |||| ||||||||||||  |||||| ||||||| ||||||||||  |||| ||||||||||||| |||| ||||||||||| | ||||||| |      
T  36747780 -tagcaatttgagagaacaagtcaggagggattaccaacataattcccactcatcggaaaactgcaaaggaaatgtcaaaagccacatccaagtgcttga 36747682  T
Q  263 ccacacaaaataattaccaatataattcctcatgattcattttccatat 311  Q
    | | ||||||||||||||| ||| ||| ||||||||| |||||||||||    
T  36747681 cgatacaaaataattaccactattatttctcatgatttattttccatat 36747633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 444 - 537
Target Start/End: Complemental strand, 36747395 - 36747302
Alignment:
Q  444 aatactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcattt 537  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  36747395 aatactcatttaataacatagattataatagaaagtaaagaaaaaaggtagcaataaagtaaagaaaacaaatttgacaaacaagtaggcattt 36747302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 715 - 855
Target Start/End: Complemental strand, 36770240 - 36770095
Alignment:
Q  715 agagaataaatgcataatttcattagtgcatatgcaagta-----agctaccaactccagagcaaacacatgcaagcacatagttctaattttagaagat 809  Q
    ||||||||||||||||||||||||||| || ||||| | |     ||||| |||||||||| ||| ||||||||||||||||| |||||||| |||||||    
T  36770240 agagaataaatgcataatttcattagtacacatgcatgcatataaagctatcaactccagaacaagcacatgcaagcacatagctctaatttgagaagat 36770141  T
Q  810 gttctcacatcaaaagtagaaatctaaaacaagactcaccaaactt 855  Q
    |||||| |||||||| ||||||||||| |||||||| |||||||||    
T  36770140 gttctcccatcaaaactagaaatctaagacaagactaaccaaactt 36770095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 447 - 537
Target Start/End: Complemental strand, 36754790 - 36754702
Alignment:
Q  447 actcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcattt 537  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  36754790 actcatttaataaca--gattataatagaaagtaaagaaaaaaggtagcaataaagtaaaggaaacaaatttgacaaacaagtaggcattt 36754702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 442 - 529
Target Start/End: Complemental strand, 36770723 - 36770636
Alignment:
Q  442 ttaatactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagt 529  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| ||||| |||||    
T  36770723 ttaatactcatataataacatagattataatagaaagaaaagaaaaaaggcaacaataaagtaaaggaaacaaattcgacaaccaagt 36770636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 287 - 386
Target Start/End: Complemental strand, 36771242 - 36771143
Alignment:
Q  287 attcctcatgattcattttccatatacaacacaaatgaattactcactcaaagatgattttaattaaattcctaaatagtttattaataaaggatttaaa 386  Q
    |||| ||||||||||||| | ||||| |||||||| ||||||||||||  ||||||||||||||||||||||| ||  | ||||||||||||||||||||    
T  36771242 attcttcatgattcatttgcaatatataacacaaaggaattactcactacaagatgattttaattaaattcctcaactgcttattaataaaggatttaaa 36771143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 717 - 855
Target Start/End: Complemental strand, 36747018 - 36746882
Alignment:
Q  717 agaataaatgcataatttcattagtgcatatgcaagtaa-gctaccaactccagagcaaacacatgcaagcacatagttctaattttagaagatgttctc 815  Q
    |||||||||| ||||||| |||||| || |||||  ||| |||| ||| |||| | ||| ||||||||||||||||| |||||||| |||||||||||||    
T  36747018 agaataaatgaataatttaattagtacacatgcatataaagctatcaagtccacaacaagcacatgcaagcacatagctctaatttgagaagatgttctc 36746919  T
Q  816 acatcaaaagtagaaatctaaaacaagactcaccaaactt 855  Q
    |||| |||   | |||||||| ||||||||||||||||||    
T  36746918 acataaaa---aaaaatctaagacaagactcaccaaactt 36746882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 789 - 855
Target Start/End: Complemental strand, 36754358 - 36754292
Alignment:
Q  789 atagttctaattttagaagatgttctcacatcaaaagtagaaatctaaaacaagactcaccaaactt 855  Q
    |||| |||||||  ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  36754358 atagctctaattggagaagatgttctcacatcaaaagtaaaaatctaagacaagactcaccaaactt 36754292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 36754625 - 36754560
Alignment:
Q  600 tcacaatggtccatttcatctaacaactcccaaacctaattttacaaacacatg-aaacctcaatt 664  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||    
T  36754625 tcacaatggcccatttcatctaactacttccaaacctaattttacaaacacatgaaaacctcaatt 36754560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 36747225 - 36747160
Alignment:
Q  600 tcacaatggtccatttcatctaacaactcccaaacctaattttacaaacacatg-aaacctcaatt 664  Q
    ||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||    
T  36747225 tcacaatggcccatttcatctaactacttccaaaccaaattttacaaacacatgaaaacctcaatt 36747160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 645
Target Start/End: Complemental strand, 36770425 - 36770381
Alignment:
Q  601 cacaatggtccatttcatctaacaactcccaaacctaattttaca 645  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||    
T  36770425 cacaatggtccatttcatctaactactcccacacctaattttaca 36770381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 665 - 701
Target Start/End: Complemental strand, 36754250 - 36754214
Alignment:
Q  665 ggtggaattacatgcataaatctgattcttacatgca 701  Q
    |||||||||||||||||||| ||||||||||||||||    
T  36754250 ggtggaattacatgcataaaactgattcttacatgca 36754214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 705
Target Start/End: Complemental strand, 36746846 - 36746811
Alignment:
Q  670 aattacatgcataaatctgattcttacatgcattga 705  Q
    ||||||||||||||| ||||||||||||||||||||    
T  36746846 aattacatgcataaaactgattcttacatgcattga 36746811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 36747916 - 36747879
Alignment:
Q  8 gacaaaaccttgaatttatccactacttgatacgccat 45  Q
    ||||||||||||||||||||||| || |||||||||||    
T  36747916 gacaaaaccttgaatttatccacaacatgatacgccat 36747879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 442 - 535
Target Start/End: Original strand, 23439012 - 23439105
Alignment:
Q  442 ttaatactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcat 535  Q
    ||||||| ||| ||||||||||||||| |||| |||| ||| |  | |||| |  | |||||||||||||||||||||||||||| ||||||||    
T  23439012 ttaatacccatataatagcatagattagaatataaagaaaacaggacaggtaatgacaaagtaaaggaaacaaatttgacaaacaggtaggcat 23439105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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