View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577-Insertion-6 (Length: 1000)
Name: NF4577-Insertion-6
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 195 - 991
Target Start/End: Complemental strand, 1522585 - 1521769
Alignment:
| Q |
195 |
attatctgggtcaggttcaatttatgtggtaggtgtttgtatttgattttttaggagaataatattcattttggattggtcaactttgatcatttttatg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522585 |
attatctgggtcaggttcaatttatgtggtaggtgtttgtatttgattttttaggagaataatattcattttggattggtcaactttgatcatttttatg |
1522486 |
T |
|
| Q |
295 |
cagagctgaaaattaggttcnnnnnnnagggggaaatttggatgttggaagaagggttgttcttgtgttgtgaattcannnnnnnnattgatggatcgtt |
394 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
1522485 |
cagaactgaaaattaggttctttttttagggggaaatttggatgttggaagaagggttgttcttgtgttgtgaattcattttttttattgatggattgtt |
1522386 |
T |
|
| Q |
395 |
taatttgaattactcatttatgttgaatgaactaggtgttttagtgtgttaatatgtgattattttgcctaattgtgattgtgtgttttgtgctatatta |
494 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522385 |
taatttgaattactcatttatgatgaatgaactaggtgttttagtgtgttaatatgtgattattttgcctaattgtgattgtgtgttttgtgctatatta |
1522286 |
T |
|
| Q |
495 |
gatgtagataggtannnnnnncttgtcatgattttttcataaaatttcatatttgggtgatattttcattgtagaatctcaatgnnnnnnnn-tgtttga |
593 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1522285 |
gatgtagataggtatttttttcttgtcatgattttttcataaaatttcatatttgggtgatattttcattgtagaatctcaatgaaaaaaaaatgtttga |
1522186 |
T |
|
| Q |
594 |
ttgtaaaatttaac-----aggtatcttagatgctattatgttatcttatgttcatgtttgtgtatcaatttattagttaatcgattggtattagggctg |
688 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522185 |
ttgtaaaatttaacctatgaggtatcttagatgctattatgttaccttatgttcatgtttgtgtatcaatttattagttaatcgattggtattagggctt |
1522086 |
T |
|
| Q |
689 |
ttgttgacctttgttaactttgaattctatgtgtatcagagtaatctcattgaggaacaagaaaattcatccatcttatcagatagaatttcaaatacct |
788 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1522085 |
ttgttgacctttgttaactttgaattctatgtgtatcagagtaatctcattgaggaacaagaaaattcatccatcttatcagatagaatttcaaataact |
1521986 |
T |
|
| Q |
789 |
aatttggcccctggcaaaaaataatatccaaattag-----------ttttttggatggcaaatttgtcccctgctcattaatatcaga-ggacaaattt |
876 |
Q |
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| T |
1521985 |
aatttggtccctggcaaaaaataatatccaaattagtccctgtcattttttttggatggcaaattagtcccctgctcatt-atatcagagggacaaattt |
1521887 |
T |
|
| Q |
877 |
gtccttaagtatgaaaatacca-ggactaa-ttgagcattannnnnnnnc-ggcagtaaattggccttggagaaaaattgtgagagaccaaa-tgggtc- |
971 |
Q |
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| T |
1521886 |
gtcctt-agtatgaaaataccagggactaatttgagcattattttttttcgggcagtaaattgggccttgag-aaaattgtgagagaccaaattgggtct |
1521789 |
T |
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| Q |
972 |
tcgctcaatataatttgttt |
991 |
Q |
| |
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|||||||||||||||||||| |
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| T |
1521788 |
tcgctcaatataatttgttt |
1521769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 1522782 - 1522679
Alignment:
| Q |
8 |
cacccaaacatcaatccataggtacgaggcttatgtttatctcttcacttatcaaatcttgtgtttaaggtttgtgatcttcacttgtacttgtacttgt |
107 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522782 |
cacccaaacatcaatccataggtacgaggtttatgtttatctcttcacttatcaaatcttgtgtttaaggtttgtgatcttcacttgtacttgtacttgt |
1522683 |
T |
|
| Q |
108 |
actc |
111 |
Q |
| |
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|||| |
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| T |
1522682 |
actc |
1522679 |
T |
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