View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4577-Insertion-7 (Length: 911)

Name: NF4577-Insertion-7
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4577-Insertion-7
NF4577-Insertion-7
[»] chr1 (5 HSPs)
chr1 (22-419)||(50193846-50194254)
chr1 (24-159)||(10253864-10254000)
chr1 (820-900)||(50194253-50194330)
chr1 (468-530)||(8779031-8779093)
chr1 (175-228)||(51846893-51846946)
[»] chr4 (10 HSPs)
chr4 (24-137)||(12266526-12266639)
chr4 (170-220)||(13837984-13838034)
chr4 (468-565)||(29223343-29223440)
chr4 (707-767)||(2728632-2728692)
chr4 (171-220)||(13837850-13837899)
chr4 (167-220)||(31529824-31529877)
chr4 (707-767)||(33152454-33152514)
chr4 (368-434)||(12034369-12034435)
chr4 (466-547)||(40317712-40317793)
chr4 (466-547)||(40327786-40327867)
[»] chr7 (6 HSPs)
chr7 (168-227)||(42494872-42494931)
chr7 (167-206)||(48583406-48583445)
chr7 (707-767)||(38174711-38174771)
chr7 (708-767)||(6494835-6494894)
chr7 (165-206)||(6980956-6980997)
chr7 (176-229)||(36451989-36452042)
[»] chr6 (8 HSPs)
chr6 (707-764)||(18141473-18141530)
chr6 (177-223)||(33020118-33020164)
chr6 (648-691)||(33423734-33423777)
chr6 (648-686)||(9961230-9961268)
chr6 (166-220)||(12144245-12144299)
chr6 (730-767)||(22996086-22996123)
chr6 (730-767)||(23792277-23792314)
chr6 (707-764)||(29396535-29396592)
[»] chr5 (6 HSPs)
chr5 (467-572)||(8206105-8206210)
chr5 (167-228)||(34394661-34394722)
chr5 (707-767)||(900976-901036)
chr5 (630-674)||(900899-900941)
chr5 (648-685)||(8317407-8317444)
chr5 (8-159)||(16465153-16465308)
[»] chr2 (7 HSPs)
chr2 (723-767)||(33538282-33538326)
chr2 (167-225)||(532171-532229)
chr2 (167-219)||(3094273-3094326)
chr2 (468-529)||(6788452-6788513)
chr2 (508-567)||(15301440-15301499)
chr2 (167-225)||(18182501-18182559)
chr2 (648-685)||(40611594-40611631)
[»] chr3 (13 HSPs)
chr3 (466-568)||(1183029-1183130)
chr3 (167-225)||(26960939-26960997)
chr3 (166-216)||(30674999-30675049)
chr3 (8-93)||(25052547-25052632)
chr3 (468-565)||(30843734-30843831)
chr3 (165-225)||(16205708-16205768)
chr3 (707-767)||(26847678-26847738)
chr3 (76-159)||(36455424-36455508)
chr3 (730-765)||(40034841-40034876)
chr3 (167-197)||(32385385-32385415)
chr3 (472-557)||(621797-621882)
chr3 (730-767)||(30074981-30075018)
chr3 (724-765)||(30796685-30796726)
[»] chr8 (3 HSPs)
chr8 (730-767)||(24512331-24512368)
chr8 (166-221)||(15258734-15258789)
chr8 (732-767)||(37819138-37819173)
[»] scaffold0045 (1 HSPs)
scaffold0045 (468-589)||(20706-20827)
[»] scaffold0007 (1 HSPs)
scaffold0007 (8-93)||(190274-190359)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 22 - 419
Target Start/End: Original strand, 50193846 - 50194254
Alignment:
Q  22 tataacctaacttggattattttaacctacaattaattccacattgcttccaacaccactttgcacatcattcttagcggcattagttcccacaatattt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50193846 tataacctaacttggattattttaacctacaattaattccacattgcttccaacaccactttgcacatcattcttagcagcattagttcccacaatattt 50193945  T
Q  122 tgatacacaaaagagaacgttgtcgatgaaggaagaagtagatgccacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcat 221  Q
     |||||||||||||||||||| ||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50193946 cgatacacaaaagagaacgttctcgatgaagaaagaaaaagatgtcacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcat 50194045  T
Q  222 ccaaatgacatcctttcttcactacc-tttaacaatgtttttcgatcatctttgaagactttagaaaaa--------------tctttcaccttgttact 306  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||              |||||||||||||||||    
T  50194046 ccaaatgacatcctttcttcactaccttttaacaatgtttttcgatcatctttaaagactttagaaaaatcttttcacttaactctttcaccttgttact 50194145  T
Q  307 tgcaccttctctacatcactacacccctctttaatttgttgtacttgtatccgtcaaacctaaaataaaagaggtaattgtcattttggtccctggacac 406  Q
    ||||||||||||||||||||||||||||||||  |    |||  |||||| | ||||||||||||||||||| ||||| || ||||||||||||| |||     
T  50194146 tgcaccttctctacatcactacacccctcttt--tacaatgt--ttgtattcatcaaacctaaaataaaagaagtaatagttattttggtccctgaacat 50194241  T
Q  407 ataaggagtagtc 419  Q
    |||||||||||||    
T  50194242 ataaggagtagtc 50194254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 10253864 - 10254000
Alignment:
Q  24 taacctaacttggattattttaacctacaattaattccacattgcttccaacaccactttgcacatcattcttagcggcattagttcccacaatattttg 123  Q
    |||||||||||||||||||||||| | ||  |||||| |||||||||||||||||||||||||||||||| ||| |  |||| ||| ||||||||||| |    
T  10253864 taacctaacttggattattttaacattcacctaattcaacattgcttccaacaccactttgcacatcattattaccaacatttgtttccacaatatttcg 10253963  T
Q  124 atacacaa-aagagaacgttgtcgatgaaggaagaag 159  Q
    |||||||| |||||||||| || |||| |||||||||    
T  10253964 atacacaacaagagaacgtcgttgatgtaggaagaag 10254000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 820 - 900
Target Start/End: Original strand, 50194253 - 50194330
Alignment:
Q  820 tcgttggacaacaaggaaggagtaagaaaagagagtgagcagtggtagttagctagcaactctccctcgtcctctccgccc 900  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  50194253 tcgttggacaacaaggaaggagtaagaaaagagagtgagca---gtagttagctagcaactctccctcgtcctctccgccc 50194330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 530
Target Start/End: Original strand, 8779031 - 8779093
Alignment:
Q  468 tgattgtgcaccttgttagtgaagatagtctctaatgctaaaataatctgtcaatactcacaa 530  Q
    ||||||||||| |||||||| || |||||||||  |||||||||||||| ||||| |||||||    
T  8779031 tgattgtgcactttgttagttaaaatagtctctggtgctaaaataatctctcaatgctcacaa 8779093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 51846946 - 51846893
Alignment:
Q  175 acattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcatccaaatg 228  Q
    ||||||||||||  ||||||||||||| ||| |  |||||||||||||||||||    
T  51846946 acattgtggttggtcaatgtcacatgatattaacgccacaatgtcatccaaatg 51846893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 12266526 - 12266639
Alignment:
Q  24 taacctaacttggattattttaacctacaattaattccacattgcttccaacaccactttgcacatcattcttagcggcattagttcccacaatattttg 123  Q
    ||||||||||||||||  |||||||| ||| |||||| |||||||||| | ||||||| ||||||||||| |||||  |||||||| |||||||||||||    
T  12266526 taacctaacttggattgatttaacctccaactaattcaacattgcttctatcaccactatgcacatcattattagcaacattagtttccacaatattttg 12266625  T
Q  124 atacacaaaagaga 137  Q
    ||||||||||||||    
T  12266626 atacacaaaagaga 12266639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 13837984 - 13838034
Alignment:
Q  170 ttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtca 220  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||||    
T  13837984 ttgtcacattgtggttgaccaatgtcagatgacattggaaccacaatgtca 13838034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 468 - 565
Target Start/End: Complemental strand, 29223440 - 29223343
Alignment:
Q  468 tgattgtgcaccttgttagtgaagatagtctctaatgctaaaataatctgtcaatactcacaaaaaattatttcttatagggactcaaatgataataa 565  Q
    |||||||||||  ||||||| || ||||||||||| ||||||||||||| |||||  |||||| || |  |||| |||| ||||| ||||||||||||    
T  29223440 tgattgtgcactatgttagtcaaaatagtctctaacgctaaaataatctttcaatgttcacaataactcttttcatataaggactaaaatgataataa 29223343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 707 - 767
Target Start/End: Original strand, 2728632 - 2728692
Alignment:
Q  707 ctcacaaaaatataggttattgtattggttgtccaattttaaatgtagaaataacatagct 767  Q
    ||||||||  || ||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  2728632 ctcacaaagttaaaggttgttgcattggttgtccaattttaaatgtacaaataacatagct 2728692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 13837899 - 13837850
Alignment:
Q  171 tgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtca 220  Q
    |||||||||||||||| |||||||||||||| ||||  ||||||||||||    
T  13837899 tgtcacattgtggttggccaatgtcacatgacattggcaccacaatgtca 13837850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 31529824 - 31529877
Alignment:
Q  167 cacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtca 220  Q
    ||||||| |||||||||||||||||| |||||||||||||  ||| ||||||||    
T  31529824 cacttgtgacattgtggttgaccaatatcacatgaaattggcacctcaatgtca 31529877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 707 - 767
Target Start/End: Complemental strand, 33152514 - 33152454
Alignment:
Q  707 ctcacaaaaatataggttattgtattggttgtccaattttaaatgtagaaataacatagct 767  Q
    ||||||||| || | ||| ||| |||||||||||||||||| ||||| |||||||||||||    
T  33152514 ctcacaaaattaaaagttgttgcattggttgtccaattttagatgtacaaataacatagct 33152454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 368 - 434
Target Start/End: Original strand, 12034369 - 12034435
Alignment:
Q  368 aaaataaaagaggtaattgtcattttggtccctggacacataaggagtagtcataatagtccatcaa 434  Q
    |||||||||| |||||| |||||||||||||||| |   |||| ||||||||| |||||||| ||||    
T  12034369 aaaataaaaggggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaa 12034435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 547
Target Start/End: Complemental strand, 40317793 - 40317712
Alignment:
Q  466 cttgattgtgcaccttgttagtgaagatagtctctaatgctaaaataatctgtcaatactcacaaaaaattatttcttatag 547  Q
    ||||||||| ||| |||||| | || ||||||||| | | ||||||||||| ||||||||||||| || || |||| |||||    
T  40317793 cttgattgtacactttgttaatcaaaatagtctctgacgttaaaataatctctcaatactcacaataacttttttcatatag 40317712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 547
Target Start/End: Complemental strand, 40327867 - 40327786
Alignment:
Q  466 cttgattgtgcaccttgttagtgaagatagtctctaatgctaaaataatctgtcaatactcacaaaaaattatttcttatag 547  Q
    ||||||||| ||| |||||| | || ||||||||| | | ||||||||||| ||||||||||||| || || |||| |||||    
T  40327867 cttgattgtacactttgttaatcaaaatagtctctgacgttaaaataatctctcaatactcacaataacttttttcatatag 40327786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 42494872 - 42494931
Alignment:
Q  168 acttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcatccaaat 227  Q
    |||||| ||||||||||||||||||||||||||| ||||  |||||||||||| ||||||    
T  42494872 acttgtaacattgtggttgaccaatgtcacatgacattggcaccacaatgtcacccaaat 42494931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 48583406 - 48583445
Alignment:
Q  167 cacttgtcacattgtggttgaccaatgtcacatgaaattg 206  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  48583406 cacttgtcacattgtggttgaccaatgtcacatgacattg 48583445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 707 - 767
Target Start/End: Original strand, 38174711 - 38174771
Alignment:
Q  707 ctcacaaaaatataggttattgtattggttgtccaattttaaatgtagaaataacatagct 767  Q
    ||||||||  || ||||| ||| |||||||||||||||||| ||||| |||||||||||||    
T  38174711 ctcacaaagttaaaggttgttgcattggttgtccaattttagatgtacaaataacatagct 38174771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 767
Target Start/End: Original strand, 6494835 - 6494894
Alignment:
Q  708 tcacaaaaatataggttattgtattggttgtccaattttaaatgtagaaataacatagct 767  Q
    |||||||| || | ||| ||| |||||||||||||||||| ||||| |||||||||||||    
T  6494835 tcacaaaattaaaagttgttgcattggttgtccaattttagatgtacaaataacatagct 6494894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 6980956 - 6980997
Alignment:
Q  165 gccacttgtcacattgtggttgaccaatgtcacatgaaattg 206  Q
    ||||||||| |||||||||||| |||||||||||||| ||||    
T  6980956 gccacttgtaacattgtggttggccaatgtcacatgacattg 6980997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 36452042 - 36451989
Alignment:
Q  176 cattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcatccaaatga 229  Q
    ||||||||||||| |||||||||||| ||||| ||| |||||||| | ||||||    
T  36452042 cattgtggttgacaaatgtcacatgacattgacacctcaatgtcaccgaaatga 36451989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 707 - 764
Target Start/End: Original strand, 18141473 - 18141530
Alignment:
Q  707 ctcacaaaaatataggttattgtattggttgtccaattttaaatgtagaaataacata 764  Q
    ||||||||  || ||||| |||||||||||||||||||||||||||| ||||||||||    
T  18141473 ctcacaaagttaaaggttgttgtattggttgtccaattttaaatgtacaaataacata 18141530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 33020164 - 33020118
Alignment:
Q  177 attgtggttgaccaatgtcacatgaaattgaaaccacaatgtcatcc 223  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||    
T  33020164 attgtggttgtccaatgtcacatgacattgacaccacaatgtcatcc 33020118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 691
Target Start/End: Complemental strand, 33423777 - 33423734
Alignment:
Q  648 acaaccaacaacttatttgctatttttgaatatattttgtccaa 691  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||    
T  33423777 acaaccaacaacttaattgctattttttaatatattttgcccaa 33423734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 648 - 686
Target Start/End: Complemental strand, 9961268 - 9961230
Alignment:
Q  648 acaaccaacaacttatttgctatttttgaatatattttg 686  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  9961268 acaaccaacaacttatttgctattttttaatattttttg 9961230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 12144245 - 12144299
Alignment:
Q  166 ccacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtca 220  Q
    |||||| | ||||||| ||||| |||| |||||||||||||| ||||||||||||    
T  12144245 ccacttattacattgtagttgatcaatatcacatgaaattgacaccacaatgtca 12144299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 730 - 767
Target Start/End: Original strand, 22996086 - 22996123
Alignment:
Q  730 attggttgtccaattttaaatgtagaaataacatagct 767  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  22996086 attggttgtccaattttagatgtacaaataacatagct 22996123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 730 - 767
Target Start/End: Complemental strand, 23792314 - 23792277
Alignment:
Q  730 attggttgtccaattttaaatgtagaaataacatagct 767  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  23792314 attggttgtccaattttagatgtacaaataacatagct 23792277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 764
Target Start/End: Original strand, 29396535 - 29396592
Alignment:
Q  707 ctcacaaaaatataggttattgtattggttgtccaattttaaatgtagaaataacata 764  Q
    ||||||||  || ||||| ||| |||||||||||||||||| ||||| ||||||||||    
T  29396535 ctcacaaagttaaaggttgttgcattggttgtccaattttagatgtacaaataacata 29396592  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 467 - 572
Target Start/End: Original strand, 8206105 - 8206210
Alignment:
Q  467 ttgattgtgcaccttgttagtgaagatagtctctaatgctaaaataatctgtcaatactcacaaaaaattatttcttatagggactcaaatgataataag 566  Q
    |||||||||||| |||||| | || ||||||||| | | ||||||||| | ||||||| |||||||| | ||||| ||||| |||| |||||| ||| ||    
T  8206105 ttgattgtgcacattgttaatcaaaatagtctctgacgttaaaataatttctcaatacccacaaaaactcatttcatatagagactaaaatgacaattag 8206204  T
Q  567 taggta 572  Q
    ||||||    
T  8206205 taggta 8206210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 34394722 - 34394661
Alignment:
Q  167 cacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcatccaaatg 228  Q
    ||||||| ||||||||||||||||||||||||| | ||||  ||| |||||||| |||||||    
T  34394722 cacttgtgacattgtggttgaccaatgtcacatcacattggcaccccaatgtcacccaaatg 34394661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 707 - 767
Target Start/End: Original strand, 900976 - 901036
Alignment:
Q  707 ctcacaaaaatataggttattgtattggttgtccaattttaaatgtagaaataacatagct 767  Q
    ||||||||| || | ||| ||| |||||||||||||||||| ||||| |||||||||||||    
T  900976 ctcacaaaattaaaagttgttgcattggttgtccaattttagatgtacaaataacatagct 901036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 674
Target Start/End: Original strand, 900899 - 900941
Alignment:
Q  630 tgaacaactaaattgtacacaaccaacaacttatttgctattttt 674  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||    
T  900899 tgaacaaccaaattgtaca--accaacaacttatttgctattttt 900941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 685
Target Start/End: Complemental strand, 8317444 - 8317407
Alignment:
Q  648 acaaccaacaacttatttgctatttttgaatatatttt 685  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  8317444 acaaccaacaacttttttgctattttttaatatatttt 8317407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 16465308 - 16465153
Alignment:
Q  8 tattcatcatgaactataacctaacttggattattttaacctacaattaattccacattgcttccaacaccactttgcacatcattcttagcggcattag 107  Q
    ||||||||||  ||| |||||||||||||||||| ||||| | ||  |||||| ||||| | || | |||||| |||  ||||||| |||||  ||| |     
T  16465308 tattcatcattgactgtaacctaacttggattatcttaacttccatctaattcaacattccctctaccaccacattgagcatcattattagcaacatcaa 16465209  T
Q  108 ttcccacaatattttgatacaca-aaagagaa---cgttgtcgatgaaggaagaag 159  Q
    || | ||||||||| ||||||||  |||||||   ||| |||||||||||||||||    
T  16465208 tttcaacaatatttcgatacacagcaagagaacgtcgtcgtcgatgaaggaagaag 16465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 723 - 767
Target Start/End: Original strand, 33538282 - 33538326
Alignment:
Q  723 ttattgtattggttgtccaattttaaatgtagaaataacatagct 767  Q
    |||||| |||||||||||||||||||||||| |||||||||||||    
T  33538282 ttattgcattggttgtccaattttaaatgtacaaataacatagct 33538326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 532229 - 532171
Alignment:
Q  167 cacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcatccaa 225  Q
    |||||||||||||||||||| |||||||||||||| ||||  ||||| |||||| ||||    
T  532229 cacttgtcacattgtggttggccaatgtcacatgacattggcaccaccatgtcacccaa 532171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 3094273 - 3094326
Alignment:
Q  167 cacttgtca-cattgtggttgaccaatgtcacatgaaattgaaaccacaatgtc 219  Q
    ||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||    
T  3094273 cacttgtcaacattgtagttgaccaatgtcacatgacattgacaccacaatgtc 3094326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 529
Target Start/End: Complemental strand, 6788513 - 6788452
Alignment:
Q  468 tgattgtgcaccttgttagtgaagatagtctctaatgctaaaataatctgtcaatactcaca 529  Q
    ||||||||||| |||||||| |  ||||||||| ||||||||||||||  ||||||||||||    
T  6788513 tgattgtgcactttgttagtcagaatagtctctgatgctaaaataatccttcaatactcaca 6788452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 567
Target Start/End: Original strand, 15301440 - 15301499
Alignment:
Q  508 aaataatctgtcaatactcacaaaaaattatttcttatagggactcaaatgataataagt 567  Q
    ||||||||| ||||||||||||| || || |||| |||||||||| ||||||| ||||||    
T  15301440 aaataatctctcaatactcacaataacttttttcatatagggactgaaatgatgataagt 15301499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 18182559 - 18182501
Alignment:
Q  167 cacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcatccaa 225  Q
    ||||||| |||||||||||| |||||||||||||| ||||  ||| |||||||| ||||    
T  18182559 cacttgtgacattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaa 18182501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 685
Target Start/End: Original strand, 40611594 - 40611631
Alignment:
Q  648 acaaccaacaacttatttgctatttttgaatatatttt 685  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  40611594 acaaccaacaacttttttgctattttttaatatatttt 40611631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 466 - 568
Target Start/End: Original strand, 1183029 - 1183130
Alignment:
Q  466 cttgattgtgcaccttgttagtgaagatagtctctaatgctaaaataatctgtcaatactcacaaaaaattatttcttatagggactcaaatgataataa 565  Q
    ||||||||||||| |||||||| || ||||||||| ||||||||||| | | |||| |||||||| ||  | |||| ||||||| || |||||| |||||    
T  1183029 cttgattgtgcactttgttagtcaaaatagtctctgatgctaaaatactatctcaacactcacaataacatttttcatataggg-cttaaatgacaataa 1183127  T
Q  566 gta 568  Q
    |||    
T  1183128 gta 1183130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 26960939 - 26960997
Alignment:
Q  167 cacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcatccaa 225  Q
    ||||||| |||||||||||| |||||||||||||| ||||| ||| |||||||| ||||    
T  26960939 cacttgtgacattgtggttggccaatgtcacatgacattgacacctcaatgtcacccaa 26960997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 30674999 - 30675049
Alignment:
Q  166 ccacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaat 216  Q
    ||||||||||||||||||||| | |||||||||||| ||||| ||||||||    
T  30674999 ccacttgtcacattgtggttggctaatgtcacatgacattgacaccacaat 30675049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 25052547 - 25052632
Alignment:
Q  8 tattcatcatgaactataacctaacttggattattttaacctacaattaattccacattgcttccaacaccactttgcacatcatt 93  Q
    |||||||||| |||  |||||||||||| ||||||||| ||| ||  ||||||  |||||| |||| | |||||||||||||||||    
T  25052547 tattcatcattaaccgtaacctaacttgaattattttagcctccacctaattcgtcattgcctccaccgccactttgcacatcatt 25052632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 565
Target Start/End: Complemental strand, 30843831 - 30843734
Alignment:
Q  468 tgattgtgcaccttgttagtgaagatagtctctaatgctaaaataatctgtcaatactcacaaaaaattatttcttatagggactcaaatgataataa 565  Q
    ||||||||||| |||||| | || |||||| || | ||||||||||||| ||||| ||||||| || || |||| |||| ||||| |||||| |||||    
T  30843831 tgattgtgcactttgttaatcaaaatagtccctgacgctaaaataatctctcaatgctcacaataagttttttcatataaggactaaaatgacaataa 30843734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 16205768 - 16205708
Alignment:
Q  165 gccacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcatccaa 225  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||  ||| |||||||| ||||    
T  16205768 gccacttgtgacattgtggttgatcaatgtcacatgacattggcaccccaatgtcacccaa 16205708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 707 - 767
Target Start/End: Complemental strand, 26847738 - 26847678
Alignment:
Q  707 ctcacaaaaatataggttattgtattggttgtccaattttaaatgtagaaataacatagct 767  Q
    ||||||||| || | ||||||| |||||||||| ||||||| ||||| |||||||||||||    
T  26847738 ctcacaaaattaaaagttattgcattggttgtctaattttagatgtacaaataacatagct 26847678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 36455424 - 36455508
Alignment:
Q  76 accactttgcacatcattcttagcggcattagttcccacaatattttgatacacaa-aagagaacgttgtcgatgaaggaagaag 159  Q
    |||||||||||||||||| |||||  ||| ||||  |||||||| ||||| ||||| |||||||| ||||| |||| ||||||||    
T  36455424 accactttgcacatcattattagcaacatcagttttcacaatatgttgatgcacaacaagagaacattgtcaatgatggaagaag 36455508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 765
Target Start/End: Original strand, 40034841 - 40034876
Alignment:
Q  730 attggttgtccaattttaaatgtagaaataacatag 765  Q
    |||||||||||||||||||||||| |||||||||||    
T  40034841 attggttgtccaattttaaatgtacaaataacatag 40034876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 32385415 - 32385385
Alignment:
Q  167 cacttgtcacattgtggttgaccaatgtcac 197  Q
    |||||||||||||||||||||||||||||||    
T  32385415 cacttgtcacattgtggttgaccaatgtcac 32385385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 557
Target Start/End: Complemental strand, 621882 - 621797
Alignment:
Q  472 tgtgcaccttgttagtgaagatagtctctaatgctaaaataatctgtcaatactcacaaaaaattatttcttatagggactcaaat 557  Q
    ||||||| |||||||| || ||||||| | ||| ||||||||| | ||||||||||||| || || |||| |||| ||||| ||||    
T  621882 tgtgcactttgttagtcaaaatagtctttgatgttaaaataatatctcaatactcacaataacttttttcatatatggactgaaat 621797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 730 - 767
Target Start/End: Original strand, 30074981 - 30075018
Alignment:
Q  730 attggttgtccaattttaaatgtagaaataacatagct 767  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  30074981 attggttgtccaattttagatgtacaaataacatagct 30075018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 724 - 765
Target Start/End: Complemental strand, 30796726 - 30796685
Alignment:
Q  724 tattgtattggttgtccaattttaaatgtagaaataacatag 765  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||    
T  30796726 tattggattagttgtccaattttaattgtagaaataacatag 30796685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 730 - 767
Target Start/End: Original strand, 24512331 - 24512368
Alignment:
Q  730 attggttgtccaattttaaatgtagaaataacatagct 767  Q
    |||||||||||||||||||||||| |||||||||||||    
T  24512331 attggttgtccaattttaaatgtacaaataacatagct 24512368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 15258789 - 15258734
Alignment:
Q  166 ccacttgtcacattgtggttgaccaatgtcacatgaaattgaaaccacaatgtcat 221  Q
    ||||||||||||||||||||  ||||||| || ||| ||||| |||||||||||||    
T  15258789 ccacttgtcacattgtggttatccaatgttacgtgacattgacaccacaatgtcat 15258734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 732 - 767
Target Start/End: Complemental strand, 37819173 - 37819138
Alignment:
Q  732 tggttgtccaattttaaatgtagaaataacatagct 767  Q
    |||||||||||||||||||||| |||||||||||||    
T  37819173 tggttgtccaattttaaatgtacaaataacatagct 37819138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 589
Target Start/End: Complemental strand, 20827 - 20706
Alignment:
Q  468 tgattgtgcaccttgttagtgaagatagtctctaatgctaaaataatctgtcaatactcacaaaaaattatttcttatagggactcaaatgataataagt 567  Q
    ||||||| ||| |||||||| || |||||| |||| ||| ||||||||  | ||||||||||| || |  |||  |||||||||| ||| || |||||||    
T  20827 tgattgtccactttgttagtcaaaatagtccctaaagcttaaataatcccttaatactcacaataactattttgatatagggactaaaaagacaataagt 20728  T
Q  568 aggtaagtagaatgactaatat 589  Q
    | ||| ||| || |||||||||    
T  20727 aagtatgtataaggactaatat 20706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 190274 - 190359
Alignment:
Q  8 tattcatcatgaactataacctaacttggattattttaacctacaattaattccacattgcttccaacaccactttgcacatcatt 93  Q
    |||||||||| |||  ||| |||||||| |||||||||| || ||  |||||| ||||||| || | |||||||||||| ||||||    
T  190274 tattcatcattaaccgtaatctaacttgaattattttaaactccacataattcaacattgcctctaccaccactttgcatatcatt 190359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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