View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577-Insertion-8 (Length: 888)
Name: NF4577-Insertion-8
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 216 - 670
Target Start/End: Original strand, 18030039 - 18030491
Alignment:
| Q |
216 |
aggattgtagtgttcaatttcttcgtcactgggagggtcgaagaggaacattgtttgcgatagttgtcaatcccggatagcagagtggaagctatttcat |
315 |
Q |
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| T |
18030039 |
aggattgtagtgttcaatttcttcgtcactgggagggtcgaagaggaacattgtttgcgatagttgtcaatcccggatagcagagcggaagctatttcat |
18030138 |
T |
|
| Q |
316 |
atatttaggaattattatacagttagtattaataatcaaataattgcagaaaaatgaaataaattactcaaaactcataatcagaagtaaaagccaacaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18030139 |
atatttaggaattattatacagttagtattaataatcaaataattgcagaaaaatgaaataaattactcaaaactcataatcagaagtaaaagccaacaa |
18030238 |
T |
|
| Q |
416 |
ggaaacaaacaagttaagtccaagactctgttttggcaagacacaattttgagcttatagcttatatcatattatttcatgtttataagctagtttatcc |
515 |
Q |
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| T |
18030239 |
ggaaacaaacaagttaagtccaagactctgttttggcaag--acaattttgagcttatagcttatatcatattatttcatgtttataagctagtttaacc |
18030336 |
T |
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| Q |
516 |
gctaactttaccaaacacccccaaacgtattcgactagcttatttgcaagctatccgctataacttcttctataagctaacttatcagatatccgttgtt |
615 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18030337 |
gctaactttaccaaacacccccaaatgtattcgactagcttatttgcaagctatccgctataacttcttctataagctaacttatcagatatccgttgtt |
18030436 |
T |
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| Q |
616 |
ttctaccaaacaaagcgtaaataccaaaactcaaacaaaagtttaagcaaatttg |
670 |
Q |
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| T |
18030437 |
ttctaccaaacaaagcgtaaataccaaaactcaaacaaaagttaaagcaaatttg |
18030491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 18029843 - 18029966
Alignment:
| Q |
8 |
gtctaacggcatagattttgtcgtctacagaggttgtactcctgcgagcatgttcttcggctactgattccgagtattttgtgaaatcccacggagactg |
107 |
Q |
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| T |
18029843 |
gtctaacggcatagattttgtcgtctacagaggttgtactcctgcgagcatgttcttcggctactgattccgagtattttgtgaaatcccacggagactg |
18029942 |
T |
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| Q |
108 |
tgttttcttctttgaaactcgtgg |
131 |
Q |
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| T |
18029943 |
tgttttcttctttgaaactcgtgg |
18029966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 809 - 888
Target Start/End: Original strand, 18030630 - 18030707
Alignment:
| Q |
809 |
caaagcaacaaactatagctatggaatgataggggatgcgacggcgcttgaagaaaatgcgggttggtggacagaacgga |
888 |
Q |
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| T |
18030630 |
caaagcaacaaactatagctatggaatgataggggatgcgacggcgcttgaagacaatgcggct--gtggacagaacgga |
18030707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 19680038 - 19680146
Alignment:
| Q |
20 |
agattttgtcgtctacagaggttgtactcctgcgagcatgttcttcggctactgattccgagtattttgtgaaatcccacggagactgtgttttcttctt |
119 |
Q |
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||||||| |||||||| || |||||||||| |||||| |||||||| || |||||||| ||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
19680038 |
agattttatcgtctactgatgttgtactccggcgagcgtgttcttcagcaactgattcagagtattgagtgaagtcccatggagactgtgttttcttctt |
19680137 |
T |
|
| Q |
120 |
tgaaactcg |
128 |
Q |
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|||||||| |
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| T |
19680138 |
cgaaactcg |
19680146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 15694451 - 15694512
Alignment:
| Q |
275 |
atagttgtcaatcccggatagcagagtggaagctatttcatatatttaggaattattataca |
336 |
Q |
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||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||| |
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| T |
15694451 |
atagttgtcaatcccaaatagcggagtggacgctatttgatatatttaggaattattataca |
15694512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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