View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577-Insertion-9 (Length: 874)
Name: NF4577-Insertion-9
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 776; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 8 - 874
Target Start/End: Complemental strand, 27442464 - 27441582
Alignment:
| Q |
8 |
gatgataactggaaaaagagcactcgacgacagccgacaagacaatgtcatcaaccttgctgaatggttcatcaaacagtcatttgaaaatgtcattgat |
107 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442464 |
gatgataactggaaaaagagcactcgacgacagccaacaagacaatgtcatcaaccttgctgaatggttcatcaaacagtcatttgaaaatgtcattgat |
27442365 |
T |
|
| Q |
108 |
ccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagcctaataagcatcgcgaca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
27442364 |
ccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacactgctgtgaaaaggagcctaataagcgtcccgaca |
27442265 |
T |
|
| Q |
208 |
tgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442264 |
tgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagttt |
27442165 |
T |
|
| Q |
308 |
acctgaagaaatgagtaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcaggaatattaggtgcttggaagaataagaagtagt |
407 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27442164 |
acctgaagaaatgagcaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcaggaaaattaggtgcttggaagaataagaagtagt |
27442065 |
T |
|
| Q |
408 |
caaggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctgaatattattttgatgctcataagatgcttag |
507 |
Q |
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| T |
27442064 |
caaggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctgaatattattttgatgctcataagatgcttag |
27441965 |
T |
|
| Q |
508 |
taaaattcatctctggtgctagtgttgatggttttgatgagggagcttccttcatttgttattgtatttgctaaagattttctttagctttctagtattt |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27441964 |
taaaattcatctctggtgctagtgttgatggttttgatgagggagcttccttcatttgttattgtatttgctaaagattttctttagctttctagtattt |
27441865 |
T |
|
| Q |
608 |
cttatatggaaatacataaaagctttattgttggtatttcttataagaattctattggacttctggac-----------tctactaaggaagagttgagt |
696 |
Q |
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| T |
27441864 |
cttatatggaaatacataaaagctttattgttggtatttcttataagaattctattggacttctggactcctacatccatccactaaggaagagttgagt |
27441765 |
T |
|
| Q |
697 |
tgaaaatcttcattgtagatttattctcttgatctttcttcagtgatttctattgactattgagtatgacccatatgtaaatgaatgactcatctgtact |
796 |
Q |
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| T |
27441764 |
tgaaaatcttcattgtagatttattctcttgatctttcttcagtgatttctattgactattgagtatgactcatatgtaaatgaatgactcatctgtact |
27441665 |
T |
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| Q |
797 |
gcagggaatggtgtttttgtattatggtttatgttaggagcattatc----attgtgagttatagaa-gtggcatatggttat |
874 |
Q |
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| T |
27441664 |
gcagggaatgatgcttttgtattatggtttatgttaggagcattatcattaattgtgagttatagaaggtggcatgtggttat |
27441582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 9e-57; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 87 - 351
Target Start/End: Original strand, 11838064 - 11838328
Alignment:
| Q |
87 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
186 |
Q |
| |
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||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||| || || || |||| || || |
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| T |
11838064 |
tcatttgaaaaggtcattgatccagcaatggacatcgacgaggaaggcttggagagtttcaggactattgcaggattggctagccactgttgtgcaaggg |
11838163 |
T |
|
| Q |
187 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
286 |
Q |
| |
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|||||||| ||| || |||||| || ||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| || |||| |
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| T |
11838164 |
agcctaatcagcgtcctgacatgggacacgtagtgaatgtgctagcaccccttgtcgagatttggaagccggctgaacctgatgttgatgatatatatgg |
11838263 |
T |
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| Q |
287 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
351 |
Q |
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| T |
11838264 |
gattgacttggatatgagtttgcctcaagcactgattaagtggcagaatcatgaaggaatgagca |
11838328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 93 - 351
Target Start/End: Complemental strand, 11855769 - 11855511
Alignment:
| Q |
93 |
gaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagccta |
192 |
Q |
| |
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||||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||| || ||||||| |
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| T |
11855769 |
gaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcctc |
11855670 |
T |
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| Q |
193 |
ataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatgga |
292 |
Q |
| |
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| T |
11855669 |
atcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattga |
11855570 |
T |
|
| Q |
293 |
cttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
351 |
Q |
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|||| |||| |||| ||| ||| | |||||||| | |||| |||||||||||||||| |
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| T |
11855569 |
cttgtatatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagca |
11855511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 87 - 351
Target Start/End: Original strand, 11850747 - 11851011
Alignment:
| Q |
87 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
186 |
Q |
| |
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||||| ||||| |||||||||||||||||| | || |||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| |||| || || |
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| T |
11850747 |
tcattcgaaaaggtcattgatccagcaatggacatagacgaggaaggcctggagagtttcaggactatggcaggattggcaagccaatgttgtgcaaggg |
11850846 |
T |
|
| Q |
187 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
286 |
Q |
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| T |
11850847 |
agcctcatcagcgtcctgacatgggacatgtagtgaatgtgctagcacctcttgtcgagatttggaagccggctgaacctgaagctgatgacatgtatgg |
11850946 |
T |
|
| Q |
287 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
351 |
Q |
| |
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|| |||||| ||| ||||| ||| ||| | | ||||||||| ||| |||||||||| ||||| |
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| T |
11850947 |
gattgacttggatataagttttcctcaaggacttagtaagtggccgaatcttgaaggaacgagca |
11851011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 524 - 666
Target Start/End: Complemental strand, 18704478 - 18704337
Alignment:
| Q |
524 |
tgctagtgttgatggttttgatgagggagcttccttcatttgttattgtatttgctaaagattttctttagctttctagtatttcttatatggaaataca |
623 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||| |||||||||||| |||| |||| |||||||| |||| ||| ||||||||||||| |||||| |
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| T |
18704478 |
tgctagtgttgatggttttgttaagggagcttccttcttttgttattgtaattgcagaagaatttctttacctttttagcatttcttatatgg-aataca |
18704380 |
T |
|
| Q |
624 |
taaaagctttattgttggtatttcttataagaattctattgga |
666 |
Q |
| |
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| | ||||| | ||||| |||| |||||||||||||||||||| |
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| T |
18704379 |
tcacagcttcaatgttgatattccttataagaattctattgga |
18704337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 524 - 680
Target Start/End: Complemental strand, 35268891 - 35268736
Alignment:
| Q |
524 |
tgctagtgttgatggttttgatgagggagcttccttcatttgttattgtatttgctaaagattttctttagctttctagtatttcttatatggaaataca |
623 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||| ||||||||| || | || |||| |||||||| |||| ||||||||||||||||| |||||| |
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| T |
35268891 |
tgctggtgttgatggttttgttgagggagcttccttcttttgttattataatcgcagaagaatttctttacctttttagtatttcttatatgg-aataca |
35268793 |
T |
|
| Q |
624 |
taaaagctttattgttggtatttcttataagaattctattggacttctggactctac |
680 |
Q |
| |
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| | ||||| | ||||| |||| |||||||||||||||||||| || |||| ||||| |
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| T |
35268792 |
tcacagcttcaatgttgatattccttataagaattctattggatttgtggagtctac |
35268736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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