View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577_high_5 (Length: 335)
Name: NF4577_high_5
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 13734039 - 13734353
Alignment:
| Q |
6 |
gtacattattcttcttttgtgctatattttggnnnnnnnnncttcctctaaacgatcacatgacctaatgatatgctcac--tctaatatcattccattg |
103 |
Q |
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| T |
13734039 |
gtacattcttcttcttttgtgctatattttggtttattttctttcctgtaaatgatcacatgacctaatgatatgctcacactctaatatcattccattg |
13734138 |
T |
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| Q |
104 |
ccacttaaccaacctagcatgtatattcatcggattgatgtttggaacgatagttagtttgataatatcacgatagaaaatgattttgtcgaaggtccaa |
203 |
Q |
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| T |
13734139 |
ccacttaaccaacctagcatgtatattcatcggattcatgtttggaacgatagttagtttgataatatcacgatagaaaatgattttgtcgaaggtccaa |
13734238 |
T |
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| Q |
204 |
aatgtagcttttgttaaaattacgatgtcacgacatgattctatcaaactcaccatcaatccaaacatgcattgagtcggtttcaacaatttcatttcaa |
303 |
Q |
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| T |
13734239 |
aatgtagcttttgttaaaattacgatgtcacgacatgattctatcaaactcaccatcaatccaaacatgcattgagacggtttcaacaatttcatttcaa |
13734338 |
T |
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| Q |
304 |
gttttgaatactttt |
318 |
Q |
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| T |
13734339 |
gttttgaatactttt |
13734353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 36705593 - 36705638
Alignment:
| Q |
239 |
tgattctatcaaactcaccatcaatccaaacatgcattgagtcggt |
284 |
Q |
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| T |
36705593 |
tgattctaccaaactcaccgtcaatccaaacacgcactgagtcggt |
36705638 |
T |
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