View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4577_high_9 (Length: 243)

Name: NF4577_high_9
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4577_high_9
NF4577_high_9
[»] chr2 (2 HSPs)
chr2 (1-235)||(17680876-17681118)
chr2 (46-128)||(5202288-5202370)
[»] chr6 (2 HSPs)
chr6 (1-235)||(10190997-10191238)
chr6 (91-156)||(9449661-9449726)
[»] chr8 (9 HSPs)
chr8 (90-156)||(10279580-10279646)
chr8 (90-136)||(35225944-35225990)
chr8 (119-156)||(16310844-16310881)
chr8 (119-156)||(37248803-37248840)
chr8 (90-153)||(15342354-15342417)
chr8 (90-153)||(15431419-15431482)
chr8 (90-153)||(15522723-15522786)
chr8 (90-136)||(12157210-12157256)
chr8 (90-136)||(19262657-19262703)
[»] chr5 (3 HSPs)
chr5 (119-156)||(4063977-4064014)
chr5 (46-130)||(3009405-3009489)
chr5 (90-162)||(19319657-19319729)
[»] chr4 (1 HSPs)
chr4 (119-156)||(55051869-55051906)
[»] chr3 (3 HSPs)
chr3 (90-136)||(51088-51134)
chr3 (92-162)||(40416252-40416321)
chr3 (95-131)||(10020102-10020138)
[»] chr1 (3 HSPs)
chr1 (69-134)||(3836047-3836112)
chr1 (119-156)||(34161971-34162008)
chr1 (119-156)||(17001252-17001289)
[»] scaffold0107 (1 HSPs)
scaffold0107 (73-126)||(43666-43719)
[»] chr7 (1 HSPs)
chr7 (90-171)||(36837376-36837457)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 17680876 - 17681118
Alignment:
Q  1 tcacacaaaatctcaaagctacatgtatatgagtcatctcacttatatatattgttcaaaatatattttttcttccaatatgtgaaccattaactcacac 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||  |||||||||||||||    
T  17680876 tcacacaaaatctcaaagctatatgtatatgagtcatctcacttata--tattgttcaaaatatattctttcttccaatatgtagaccattaactcacac 17680973  T
Q  101 ttgatacattaacatcttttaatcaagtgtgtgactatttgtgtctgtaattatgtaacataatcatataagttcaacaagagttacaacatt------- 193  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  17680974 ttgatacattaacatcttttaatcaagtgtacgactatttgtgtctgtaattatgtaacataatcatataagttcaacaagagttacaacattttcaaaa 17681073  T
Q  194 ---tggattgatagtaatttctcggagctaggtttatggtccttt 235  Q
       |||||||||||||||||||| |||||||||||||||||||||    
T  17681074 aggtggattgatagtaatttctcagagctaggtttatggtccttt 17681118  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 5202370 - 5202288
Alignment:
Q  46 tatatattgttcaaaatatattttttcttccaatatgtgaaccattaactcacacttgatacattaacatcttttaatcaagt 128  Q
    ||||||||| ||||| | || | |||||||||||||||  | | ||||||||||||| |||||||||| | ||||||||||||    
T  5202370 tatatattgatcaaattctactctttcttccaatatgtagaacgttaactcacacttcatacattaacgtattttaatcaagt 5202288  T

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Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10191238 - 10190997
Alignment:
Q  1 tcacacaaaatctcaaagctacatgtatatgagtcatctcacttatatatattgttcaaaatatattttttcttccaatatgtgaaccattaactcacac 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    ||||||||||||||||||| |||||||||||||||  |||||||||||||||    
T  10191238 tcacacaaaatctcaaagctatatgtatatgagtcatctcacttg---atattgttcaaaatatattctttcttccaatatgtagaccattaactcacac 10191142  T
Q  101 ttgatacattaacatcttttaatcaagtgtgtgactatttgtgtctgtaattatgtaacataatcatataagttcaacaagagttacaacatt------- 193  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  10191141 ttgatacattaacatcttttaatcaagtgtgcgactatttgtgtctgtaattatgtaacataatcatataagttcaacaagagttacaacattttcaaaa 10191042  T
Q  194 ---tggattgatagtaatttctcggagctaggtttatggtccttt 235  Q
       |||||||  ||||||||||| |||||||||||||||||||||    
T  10191041 aggtggattgtaagtaatttctcagagctaggtttatggtccttt 10190997  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 9449661 - 9449726
Alignment:
Q  91 taactcacacttgatacattaacatcttttaatcaagtgtgtgactatttgtgtctgtaattatgt 156  Q
    |||||||||||||| || ||||||||| |||||||||||||  ||||||||||| |||||||||||    
T  9449661 taactcacacttgacacgttaacatctcttaatcaagtgtgcaactatttgtgtttgtaattatgt 9449726  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 10279646 - 10279580
Alignment:
Q  90 ttaactcacacttgatacattaacatcttttaatcaagtgtgtgactatttgtgtctgtaattatgt 156  Q
    ||||||||||||||| |||||||||||| ||||||||||||| ||||||    ||||||||||||||    
T  10279646 ttaactcacacttgacacattaacatctattaatcaagtgtgcgactatccacgtctgtaattatgt 10279580  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 35225944 - 35225990
Alignment:
Q  90 ttaactcacacttgatacattaacatcttttaatcaagtgtgtgact 136  Q
    |||||||| |||||| |||||||||||||||| ||||||||||||||    
T  35225944 ttaactcatacttgacacattaacatcttttattcaagtgtgtgact 35225990  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 16310844 - 16310881
Alignment:
Q  119 ttaatcaagtgtgtgactatttgtgtctgtaattatgt 156  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  16310844 ttaatcaagtgtgcgactatttgtgtctgtaattatgt 16310881  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 37248803 - 37248840
Alignment:
Q  119 ttaatcaagtgtgtgactatttgtgtctgtaattatgt 156  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  37248803 ttaatcaagtgtgcgactatttgtgtctgtaattatgt 37248840  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 15342354 - 15342417
Alignment:
Q  90 ttaactcacacttgatacattaacatcttttaatcaagtgtgtgactatttgtgtctgtaatta 153  Q
    ||||||||||||| ||||||||| |||| |||||||||||||  ||| |||| ||| |||||||    
T  15342354 ttaactcacacttaatacattaatatctcttaatcaagtgtgaaactctttgcgtccgtaatta 15342417  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 15431419 - 15431482
Alignment:
Q  90 ttaactcacacttgatacattaacatcttttaatcaagtgtgtgactatttgtgtctgtaatta 153  Q
    ||||||||||||| ||||||||| |||| |||||||||||||  ||| |||| ||| |||||||    
T  15431419 ttaactcacacttaatacattaatatctcttaatcaagtgtgaaactctttgcgtccgtaatta 15431482  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 15522723 - 15522786
Alignment:
Q  90 ttaactcacacttgatacattaacatcttttaatcaagtgtgtgactatttgtgtctgtaatta 153  Q
    ||||||||||||| ||||||||| |||| |||||||||||||  ||| |||| ||| |||||||    
T  15522723 ttaactcacacttaatacattaatatctcttaatcaagtgtgaaactctttgcgtccgtaatta 15522786  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 12157256 - 12157210
Alignment:
Q  90 ttaactcacacttgatacattaacatcttttaatcaagtgtgtgact 136  Q
    |||||||||| |||| ||||||| ||||||||||||||||| |||||    
T  12157256 ttaactcacaattgacacattaatatcttttaatcaagtgtatgact 12157210  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 19262657 - 19262703
Alignment:
Q  90 ttaactcacacttgatacattaacatcttttaatcaagtgtgtgact 136  Q
    |||| |||||||||| | |||||||||||||||||||||||| ||||    
T  19262657 ttaagtcacacttgacagattaacatcttttaatcaagtgtgcgact 19262703  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 4064014 - 4063977
Alignment:
Q  119 ttaatcaagtgtgtgactatttgtgtctgtaattatgt 156  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4064014 ttaatcaagtgtgtgactatttgtgtctgtaattatgt 4063977  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 3009405 - 3009489
Alignment:
Q  46 tatatattgttcaaaatatattttttcttccaatatgtgaaccattaactcacacttgatacattaacatcttttaatcaagtgt 130  Q
    ||||| ||| ||||||| || |||||| ||||||||||  | | ||||||||||||||| ||||||  || ||||||||||||||    
T  3009405 tatatgttgatcaaaatctactttttcatccaatatgtagaacgttaactcacacttgacacattattatattttaatcaagtgt 3009489  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 19319657 - 19319729
Alignment:
Q  90 ttaactcacacttgatacattaacatcttttaatcaagtgtgtgactatttgtgtctgtaattatgtaacata 162  Q
    |||||||||||| ||||||| || |||| |||||||||||||  ||| | || ||||||||||| || |||||    
T  19319657 ttaactcacactagatacataaaaatctcttaatcaagtgtgcaactctgtgcgtctgtaattaagtgacata 19319729  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 55051906 - 55051869
Alignment:
Q  119 ttaatcaagtgtgtgactatttgtgtctgtaattatgt 156  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55051906 ttaatcaagtgtgtgactatttgtgtctgtaattatgt 55051869  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 51134 - 51088
Alignment:
Q  90 ttaactcacacttgatacattaacatcttttaatcaagtgtgtgact 136  Q
    |||| |||||||||| | |||||||||||||||||||||||||||||    
T  51134 ttaagtcacacttgacagattaacatcttttaatcaagtgtgtgact 51088  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 40416321 - 40416252
Alignment:
Q  92 aactcacacttgatacattaacatcttttaatcaagtgtgtgactatttgtgtctgtaattatgtaacata 162  Q
    |||||| |||| | |||||||||||| ||||||||||||||||||| |||| ||| ||||||||| |||||    
T  40416321 aactcatacttaacacattaacatctcttaatcaagtgtgtgacta-ttgtctctataattatgtgacata 40416252  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 10020138 - 10020102
Alignment:
Q  95 tcacacttgatacattaacatcttttaatcaagtgtg 131  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  10020138 tcacacttgatacgttaacatctattaatcaagtgtg 10020102  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 3836047 - 3836112
Alignment:
Q  69 tttcttccaatatgtgaaccattaactcacacttgatacattaacatcttttaatcaagtgtgtga 134  Q
    |||||| ||||||||  | | ||||||||||||| |||||||||| | ||||||||||||||||||    
T  3836047 tttctttcaatatgttgaacgttaactcacacttcatacattaacgtattttaatcaagtgtgtga 3836112  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 34162008 - 34161971
Alignment:
Q  119 ttaatcaagtgtgtgactatttgtgtctgtaattatgt 156  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  34162008 ttaatcaagtgtgcgactatttgtgtctgtaattatgt 34161971  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 17001252 - 17001289
Alignment:
Q  119 ttaatcaagtgtgtgactatttgtgtctgtaattatgt 156  Q
    |||||||||||||  |||||||||||||||||||||||    
T  17001252 ttaatcaagtgtgcaactatttgtgtctgtaattatgt 17001289  T

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Target: scaffold0107 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 43719 - 43666
Alignment:
Q  73 ttccaatatgtgaaccattaactcacacttgatacattaacatcttttaatcaa 126  Q
    |||||||||||  | | ||||||||||||||| |||||||||| ||||||||||    
T  43719 ttccaatatgtagaacgttaactcacacttgacacattaacatattttaatcaa 43666  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 36837376 - 36837457
Alignment:
Q  90 ttaactcacacttgatacattaacatcttttaatcaagtgtgtgactatttgtgtctgtaattatgtaacataatcatataa 171  Q
    |||||| |||||| | |||||||||||| |||||||||||| ||| | | |  |||||||||||||| ||||| || |||||    
T  36837376 ttaactaacacttaacacattaacatctcttaatcaagtgtttgattctctacgtctgtaattatgtgacatagtcgtataa 36837457  T

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