View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577_low_1 (Length: 419)
Name: NF4577_low_1
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 47909470 - 47909087
Alignment:
| Q |
18 |
aattgtaattttaatttctcttaatatgtttgtttgatttaggataataaccaaaactggtggcttaaaattaagaataatatagcagtaggttattggc |
117 |
Q |
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| T |
47909470 |
aattgtaattttaatttctcttaatatgtttgtttgatttaggataataaccaaaactggtggcttaaaattaagaataatataccagtaggttattggc |
47909371 |
T |
|
| Q |
118 |
cagctgagttatttggtaatttgaaacacagtgcaacgacggttcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacagg |
217 |
Q |
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| T |
47909370 |
cagctgagttatttggtaatttgaaacacagtgcaacgacggttcaatggggtggacaagtatttagttatgcggttaaaacaaaacctcctcacacagg |
47909271 |
T |
|
| Q |
218 |
aacacaaatggggagtggagaagaagcatataataaatataagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtac |
317 |
Q |
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| T |
47909270 |
aacacaaatggggagtggagaagaagcatataataaatataagcacgcatgctatatgggcgcagtgagaattaaagattactcacaagctcttaagtac |
47909171 |
T |
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| Q |
318 |
ccacaattcgtaaccacacatgctggagagcctgagtgttacagtgccctaaatattgctccatatggaaaagaccctgtgttc |
401 |
Q |
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| T |
47909170 |
ccacaattcgtaaccacacatgctggagagcctgagtgttacagtgccctaaatattgctccatatggaaaagaccctgtgttc |
47909087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 47928397 - 47928019
Alignment:
| Q |
19 |
attgtaattttaatttctcttaatatgtttgtttgatttaggataataaccaaaactggtggcttaaaattaagaataatatagcagtaggttattggcc |
118 |
Q |
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| T |
47928397 |
attgttattttaatttctcttaatatgttggcttgatttaggataatgcccaaaactggtggtttaaagtgaagaataacatccctgtaggttattggcc |
47928298 |
T |
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| Q |
119 |
agctgagttatttggtaatttgaaacacagtgcaacgacggttcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacagga |
218 |
Q |
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||| |||||||| |||||||| | |||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
47928297 |
agcagagttattaggtaatttaagacacagtgcaacattgattcaatggggtggacaagtgtttagttatgaggtcaaaacaaaacctcctcacacagga |
47928198 |
T |
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| Q |
219 |
acacaaatggggagtggagaagaagcatataataaatataagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacc |
318 |
Q |
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| T |
47928197 |
acacagatgggtagtggagatgcagcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatc |
47928098 |
T |
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| Q |
319 |
cacaattcgtaaccacacatgctggagagcctgagtgttacagtgccctaaatattgctccatatggaaaagaccctgt |
397 |
Q |
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| T |
47928097 |
catcatttgtaagtacacatgctgcagaaccatattgttacagtgccctcaatgacgctccatatggaaaagatcctgt |
47928019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 397
Target Start/End: Complemental strand, 47918493 - 47918257
Alignment:
| Q |
158 |
ggttcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatat |
257 |
Q |
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| T |
47918493 |
ggttcaatggggtggacaagtgtttagttatgaggtcaaaaaaa---ctcctcacactggaacacaaatgggtagtggagaagaagcatataataaattt |
47918397 |
T |
|
| Q |
258 |
aagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgtt |
357 |
Q |
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| T |
47918396 |
ggggttgcatgttacatgggtggtgtgagaatcaaagataattcgcaagcacttaagtacccatcatttgtaagtacacatgctatagaaccatattgtt |
47918297 |
T |
|
| Q |
358 |
acagtgccctaaatattgctccatatggaaaagaccctgt |
397 |
Q |
| |
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| T |
47918296 |
acagtgccttcaatgatgctccatatggaaaagatcctgt |
47918257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 47935745 - 47935605
Alignment:
| Q |
105 |
gtaggttattggccagctgagttatttggtaatttgaaacacagtgcaacgacggttcaatggggtggacaagtgtttagttatgcggttaaaacaaaac |
204 |
Q |
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| T |
47935745 |
gtaggttattggccagcggaattattgggtaatttaagacacagtgcaacattggttcaatggggaggacaagtgtttagttatcaggtcaaaactaccc |
47935646 |
T |
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| Q |
205 |
ctcctcacacaggaacacaaatggggagtggagaagaagca |
245 |
Q |
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| T |
47935645 |
ctcctcacacaggaacacagatgggtagtggagaagaagca |
47935605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 245
Target Start/End: Complemental strand, 47946920 - 47946747
Alignment:
| Q |
72 |
aactggtggcttaaaattaagaataatatagcagtaggttattggccagctgagttatttggtaatttgaaacacagtgcaacgacggttcaatggggtg |
171 |
Q |
| |
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||||||||||||| ||| ||| |||| || ||||||||||||||||| | | || | ||||| || |||| |||||||| |||||||||||||| |
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| T |
47946920 |
aactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtg |
47946821 |
T |
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| Q |
172 |
gacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagca |
245 |
Q |
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| T |
47946820 |
gacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaacacaaatgggtagtggagaagcagca |
47946747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 47946711 - 47946595
Alignment:
| Q |
281 |
tgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgccctaaatattgctcca |
380 |
Q |
| |
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|||||||||||| ||||| ||| || |||| ||||| |||||||| |||| ||| |||| | ||| ||| | |||||||||||||| || || || | |
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| T |
47946711 |
tgtgagaattaaggattattcagaaactctcaagtatccacaatttgtaagtacatatgcagcagaaccttactgttacagtgccctcaacgatgttcaa |
47946612 |
T |
|
| Q |
381 |
tatggaaaagaccctgt |
397 |
Q |
| |
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||||||||||| ||||| |
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| T |
47946611 |
tatggaaaagatcctgt |
47946595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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