View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4577_low_11 (Length: 241)
Name: NF4577_low_11
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577_low_11 |
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| [»] scaffold0702 (2 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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| [»] scaffold0637 (1 HSPs) |
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Alignment Details
Target: scaffold0702 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5545 - 5324
Alignment:
| Q |
1 |
tgaaggacattgaagctaagttgggattttattcaacacctgatgaatttgctgatgatatgagacttgttttctctcatggattattatacccttggaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
5545 |
tgaaggacattgaagctaagttgggattttattcaacacctgatgaatttgctgatgatgtgagacttgttttctctcatggattattatacacttggaa |
5446 |
T |
|
| Q |
101 |
ggatgatgttcacaaagctgccaagaggctaagtgacacttttgagaacagatggaaatccttgaaggaagaatggacactagaggaaagaagagtgaaa |
200 |
Q |
| |
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|||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
5445 |
ggatgatgttcacaaagcggcgaagaggctaagcgacacttttgagaacagatggaaatctttgaaggaagaatggacacttgaggaaagaagagtgaaa |
5346 |
T |
|
| Q |
201 |
aagattaataagaggaagaggg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
5345 |
aagattaataagaggaagaggg |
5324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2231 - 2010
Alignment:
| Q |
1 |
tgaaggacattgaagctaagttgggattttattcaacacctgatgaatttgctgatgatatgagacttgttttctctcatggattattatacccttggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2231 |
tgaaggacattgaagctaagttgggattttattcaacacctgatgaatttgctgatgatgtgagacttgttttctctcatggattattatacacttggaa |
2132 |
T |
|
| Q |
101 |
ggatgatgttcacaaagctgccaagaggctaagtgacacttttgagaacagatggaaatccttgaaggaagaatggacactagaggaaagaagagtgaaa |
200 |
Q |
| |
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|||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||||||||||||| |
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|
| T |
2131 |
ggatgatgttcacaaaactgcaaagaggctacacgacacttttgagaacagatgggaatctttgaagaaggaatggacacttgaggaaagaagagtgaaa |
2032 |
T |
|
| Q |
201 |
aagattaataagaggaagaggg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
2031 |
aagattaataagaggaagaggg |
2010 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2551 - 2771
Alignment:
| Q |
1 |
tgaaggacattgaagctaagttgggattttattcaacacctgatgaatttgctgatgatatgagacttgttttctctcatggattattatacccttggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2551 |
tgaaggacattgaagctaagttgggattttattcaacacctgatgaatttgctgatgatgtgagacttgttttctctcatggattattatacacttggaa |
2650 |
T |
|
| Q |
101 |
ggatgatgttcacaaagctgccaagaggctaagtgacacttttgagaacagatggaaatccttgaaggaagaatggacactagaggaaagaagagtgaaa |
200 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || |
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|
| T |
2651 |
ggatgatgttcacaaagcggcgaagaggctaagcgacacttttgagaacagatggaaatctttgaaggaagaatggacacttgaggaaagaagagtg-aa |
2749 |
T |
|
| Q |
201 |
aagattaataagaggaagaggg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
2750 |
aagattaataagaggaagaggg |
2771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35172238 - 35172017
Alignment:
| Q |
1 |
tgaaggacattgaagctaagttgggattttattcaacacctgatgaatttgctgatgatatgagacttgttttctctcatggattattatacccttggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
35172238 |
tgaaggacattgaagctaagttgggattttattcaacacctgatgaatttgctgatgatgtgagacttgttttctctcatggattattatacacttggaa |
35172139 |
T |
|
| Q |
101 |
ggatgatgttcacaaagctgccaagaggctaagtgacacttttgagaacagatggaaatccttgaaggaagaatggacactagaggaaagaagagtgaaa |
200 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||||||||||| |
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|
| T |
35172138 |
ggatgatgttcacaaaactgcaaagaggctacacgacactttcgagaacagatgggaatctttgaagaaggaatggacacttgaggaaagaagagtgaaa |
35172039 |
T |
|
| Q |
201 |
aagattaataagaggaagaggg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
35172038 |
aagattaataagaggaagaggg |
35172017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 20692917 - 20692724
Alignment:
| Q |
26 |
attttattcaacacctgatgaatttgctgatgatatgagacttgttttctctcatggattattatacccttggaaggatgatgttcacaaagctgccaag |
125 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| |||||||| |||| |||| |||||||| | || ||| | ||||| |||||||||| ||| | | |
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|
| T |
20692917 |
attttattcaaaaccggatgagtttgctgaggatatgaggtttgtgttctatcatggatggctttatcctcaaagggatgttgttcacaaaattgctatg |
20692818 |
T |
|
| Q |
126 |
aggctaagtgacacttttgagaacagatggaaatccttgaaggaagaatggacactagaggaaagaagagtgaaaaagattaataagaggaaga |
219 |
Q |
| |
|
||||| ||||| | ||||||||||| ||||| || ||||| || |||||| |||| ||||| |||||| | || |||||| |||||||||||| |
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|
| T |
20692817 |
aggcttagtgatatttttgagaacaagtggaagtctttgaaagaggaatgggcacttgaggatagaagactcaacaagattcataagaggaaga |
20692724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 20698395 - 20698202
Alignment:
| Q |
26 |
attttattcaacacctgatgaatttgctgatgatatgagacttgttttctctcatggattattatacccttggaaggatgatgttcacaaagctgccaag |
125 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| |||||||| |||| |||| |||||||| | || ||| | ||||| |||||||||| ||| | | |
|
|
| T |
20698395 |
attttattcaaaaccggatgagtttgctgaggatatgaggtttgtgttctatcatggatggctttatcctcaaagggatgttgttcacaaaattgctatg |
20698296 |
T |
|
| Q |
126 |
aggctaagtgacacttttgagaacagatggaaatccttgaaggaagaatggacactagaggaaagaagagtgaaaaagattaataagaggaaga |
219 |
Q |
| |
|
||||| ||||| | ||||||||||| ||||| || ||||| || |||||| |||| ||||| |||||| | || |||||| |||||||||||| |
|
|
| T |
20698295 |
aggcttagtgatatttttgagaacaagtggaagtctttgaaagaggaatgggcacttgaggatagaagactcaacaagattcataagaggaaga |
20698202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 51186059 - 51186145
Alignment:
| Q |
30 |
tattcaacacctgatgaatttgctgatgatatgagacttgttttctctcatggattattatacccttggaaggatgatgttcacaaa |
116 |
Q |
| |
|
|||||||| || ||||| |||||||| |||||||| |||| || ||||||||||| | ||||||||||||||||| ||||||||| |
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|
| T |
51186059 |
tattcaactccagatgagtttgctgaggatatgaggtttgtattatctcatggattgctttacccttggaaggatgaggttcacaaa |
51186145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0637 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0637
Description:
Target: scaffold0637; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 5448 - 5255
Alignment:
| Q |
26 |
attttattcaacacctgatgaatttgctgatgatatgagacttgttttctctcatggattattatacccttggaaggatgatgttcacaaagctgccaag |
125 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| |||||||| |||| |||| |||||||| | || ||| | ||| | |||||||||| ||| | | |
|
|
| T |
5448 |
attttattcaataccggatgagtttgctgaggatatgaggtttgtgttctatcatggatggctttatcctcaaagggacgttgttcacaaaattgctatg |
5349 |
T |
|
| Q |
126 |
aggctaagtgacacttttgagaacagatggaaatccttgaaggaagaatggacactagaggaaagaagagtgaaaaagattaataagaggaaga |
219 |
Q |
| |
|
||||| ||||| | ||||||||||| |||| || ||||| || |||||| |||| ||||| |||||| | || |||||| |||||||||||| |
|
|
| T |
5348 |
aggcttagtgatatttttgagaacaagtggatgtctttgaaagaggaatgggcacttgaggatagaagactcaacaagattcataagaggaaga |
5255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 14007413 - 14007605
Alignment:
| Q |
27 |
ttttattcaacacctgatgaatttgctgatgatatgagacttgttttctctcatggattattatacccttggaaggatgatgttcacaaagctgccaaga |
126 |
Q |
| |
|
||||||||| |||| || || |||||||| |||||||| |||| |||| |||||||| | || ||| | ||||| |||||||||| ||| | || |
|
|
| T |
14007413 |
ttttattcatcaccggacgagtttgctgaggatatgaggtttgtgttctatcatggatggctttatcctcaaagggatgttgttcacaaaattgctatga |
14007512 |
T |
|
| Q |
127 |
ggctaagtgacacttttgagaacagatggaaatccttgaaggaagaatggacactagaggaaagaagagtgaaaaagattaataagaggaaga |
219 |
Q |
| |
|
| || ||||| | ||||||||||| ||||| || ||||| || |||||| |||| ||||| |||||| | || |||||| |||||||||||| |
|
|
| T |
14007513 |
gacttagtgatatttttgagaacaagtggaagtctttgaaagaggaatgggcacttgaggatagaagactcaacaagattcataagaggaaga |
14007605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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