View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577_low_12 (Length: 235)
Name: NF4577_low_12
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577_low_12 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0864 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 5332448 - 5332227
Alignment:
| Q |
14 |
aaaagaactccgagtcatcctcatccatgcctaatcttacctcgggaacaatatctccttcgctgcaacaaagtattacatgaatttagtttcaagtcgc |
113 |
Q |
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| T |
5332448 |
aaaagaactccgagtcatcctcatccatgcctaatcttacctcgggaacaatatctccttcgctgcaacaaagtattacatgaatttagtttcaagtcgc |
5332349 |
T |
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| Q |
114 |
acatttactttagatttatatgcattgtccttattagctgagccaagctcacgaggacgcatttttgtttataatgtagagcttgcatgactacatagaa |
213 |
Q |
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| T |
5332348 |
acatttactttaaatttatatgcattgtccttattagttgagctaagctcacgaggacgcatttttgtttataatgtagagcttacatgactacatagaa |
5332249 |
T |
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| Q |
214 |
ttgaattgaaggactaaatttt |
235 |
Q |
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| T |
5332248 |
ttgaattgagggactaaatttt |
5332227 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 22589617 - 22589567
Alignment:
| Q |
14 |
aaaagaactccgagtcatcctcatccatgcctaatcttacctcgggaacaa |
64 |
Q |
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| T |
22589617 |
aaaagaactccgagtcttcctcatccatgcctaatcttacctggggaacaa |
22589567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 1861837 - 1861877
Alignment:
| Q |
132 |
tatgcattgtccttattagctgagccaagctcacgaggacg |
172 |
Q |
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| T |
1861837 |
tatgcattgtccatatcagctgagctaagctcacgaggacg |
1861877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 3994 - 4045
Alignment:
| Q |
14 |
aaaagaactccgagtcatcctcatccatgcctaatcttacctcgggaacaat |
65 |
Q |
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| T |
3994 |
aaaagaactccgagtcttcctcatccatgcctaatcttaccaggggaacaat |
4045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 27449473 - 27449513
Alignment:
| Q |
132 |
tatgcattgtccttattagctgagccaagctcacgaggacg |
172 |
Q |
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| T |
27449473 |
tatgcattgtccatattaactgagctaagctcacgaggacg |
27449513 |
T |
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