View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4577_low_14 (Length: 225)

Name: NF4577_low_14
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4577_low_14
NF4577_low_14
[»] chr6 (2 HSPs)
chr6 (1-225)||(24076017-24076228)
chr6 (26-56)||(5942532-5942562)
[»] scaffold0111 (1 HSPs)
scaffold0111 (69-102)||(37407-37440)
[»] chr4 (1 HSPs)
chr4 (63-115)||(2653735-2653787)
[»] chr1 (2 HSPs)
chr1 (69-116)||(47203772-47203820)
chr1 (69-114)||(27321299-27321344)
[»] chr7 (2 HSPs)
chr7 (73-116)||(30826511-30826554)
chr7 (72-115)||(35722547-35722590)
[»] chr2 (1 HSPs)
chr2 (68-111)||(44187773-44187816)
[»] chr3 (1 HSPs)
chr3 (20-54)||(55070189-55070223)
[»] chr8 (1 HSPs)
chr8 (73-110)||(30405194-30405231)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24076017 - 24076228
Alignment:
Q  1 tcatcaaacctctttaccaaactctgttgatagagacattgcataatatatacagaagtttgaacatcccacttattcaccttaaatgtgaatttttagc 100  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||||||||  |   ||| ||||||||||||||||| ||||||||||||||||||||    
T  24076017 tcatcaaacctctctaccaagctctgttgatagggacattgcataatatataggg---tttaaacatcccacttattcatcttaaatgtgaatttttagc 24076113  T
Q  101 tactaaactacttgatnnnnnnnnnnnnnnnnnntcaaacattttgtgccaaaataatccaatggttaggtaatgtaattttctagttctccttttagtt 200  Q
    ||||||||||||||||                  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24076114 tactaaactacttgataaaaaaaa----------tcaaaccttttgtgccaaaataatccaatggttaggtaatgtaattttctagttctcctttttgtt 24076203  T
Q  201 tacattgctcgatttcttcttttat 225  Q
    |||||||||||||||||||||||||    
T  24076204 tacattgctcgatttcttcttttat 24076228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 5942562 - 5942532
Alignment:
Q  26 gttgatagagacattgcataatatatacaga 56  Q
    |||||||||||||||||||||||||||||||    
T  5942562 gttgatagagacattgcataatatatacaga 5942532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 37407 - 37440
Alignment:
Q  69 ccacttattcaccttaaatgtgaatttttagcta 102  Q
    ||||||||||||||||||||||||||||||||||    
T  37407 ccacttattcaccttaaatgtgaatttttagcta 37440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 2653787 - 2653735
Alignment:
Q  63 aacatcccacttattcaccttaaatgtgaatttttagctactaaactacttga 115  Q
    ||||||||||||||||||||||||  ||||||| || |||||| |||||||||    
T  2653787 aacatcccacttattcaccttaaagatgaatttctaactactacactacttga 2653735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 47203820 - 47203772
Alignment:
Q  69 ccacttattcacctt-aaatgtgaatttttagctactaaactacttgat 116  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  47203820 ccacttattcacctttaaatgtgaatttttaaccactaaactacttgat 47203772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 27321299 - 27321344
Alignment:
Q  69 ccacttattcaccttaaatgtgaatttttagctactaaactacttg 114  Q
    |||||||||||  ||||| ||||||||||||| |||||||||||||    
T  27321299 ccacttattcattttaaaggtgaatttttagccactaaactacttg 27321344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 30826554 - 30826511
Alignment:
Q  73 ttattcaccttaaatgtgaatttttagctactaaactacttgat 116  Q
    |||||||| |||||  ||||||||||||||||||||||||||||    
T  30826554 ttattcactttaaagatgaatttttagctactaaactacttgat 30826511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 35722590 - 35722547
Alignment:
Q  72 cttattcaccttaaatgtgaatttttagctactaaactacttga 115  Q
    |||||||||| |||| ||||||||||||| ||||||||||||||    
T  35722590 cttattcaccctaaaggtgaatttttagccactaaactacttga 35722547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 44187773 - 44187816
Alignment:
Q  68 cccacttattcaccttaaatgtgaatttttagctactaaactac 111  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||    
T  44187773 cccacttattcactttaaaagtgaatttttagccactaaactac 44187816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 55070223 - 55070189
Alignment:
Q  20 aactctgttgatagagacattgcataatatataca 54  Q
    ||||||||||||||| |||||||||||||||||||    
T  55070223 aactctgttgatagatacattgcataatatataca 55070189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 30405194 - 30405231
Alignment:
Q  73 ttattcaccttaaatgtgaatttttagctactaaacta 110  Q
    |||||||||||||||||||||||||||| | |||||||    
T  30405194 ttattcaccttaaatgtgaatttttagccattaaacta 30405231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University