View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577_low_3 (Length: 381)
Name: NF4577_low_3
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 55 - 224
Target Start/End: Original strand, 27444191 - 27444360
Alignment:
| Q |
55 |
atacgttgctttcactgaagttgttggtagctcccctcaaaacttgaattgaaacggccatattaggagcagcttcgacattattttgaatactactcga |
154 |
Q |
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| T |
27444191 |
atacgttgctttcactgaagttgttagtagctcgcctcaaaacttgaattgaaacggccatattagtagcagcttcgacattattttgaatactactcga |
27444290 |
T |
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| Q |
155 |
tggaacactttcatctctataatgacaaggatatgaaactatttcattgagacagtgaacatccgcttga |
224 |
Q |
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| T |
27444291 |
tggaacattttcatctctataatgacaaggatgtgaaactatttcattgagactgtgaacatccgcttga |
27444360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 315
Target Start/End: Original strand, 27444395 - 27444486
Alignment:
| Q |
224 |
aaacccatgcaactaccattaagcaagcgaccccaaaaacaataccagaaattatgccaaaaaatcttgcaaccggaaatttgttcttctga |
315 |
Q |
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| T |
27444395 |
aaacccatgcaactaccattaagcaggcgaccccaaaaacaataccagaaattatgccaaaaaatcttgcaaccggaaatttgttcttctga |
27444486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27442481 - 27442538
Alignment:
| Q |
1 |
catagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
58 |
Q |
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| T |
27442481 |
catagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
27442538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11850636 - 11850579
Alignment:
| Q |
1 |
catagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
58 |
Q |
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| T |
11850636 |
catagctgtatacgtctacctttgtggtgactcgaccggtgactgtgacatatcatac |
11850579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11837953 - 11837897
Alignment:
| Q |
1 |
catagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcata |
57 |
Q |
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| T |
11837953 |
catagctgtatacgtctacctttgtggtgactcggccagtgactgtgacatatcata |
11837897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11855886 - 11855943
Alignment:
| Q |
1 |
catagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
58 |
Q |
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| T |
11855886 |
catagctgtacacgtctaactttgtggtgactcggccggtgactgtgacatatcatac |
11855943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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